Non-decorticated sunflower meal (SFM) is a potential protein source for dairy cows with high-fibre content but high ruminal degradability. The effect of replacement of soybean meal (SBM) and wheat middlings (WM) with SFM on the intake, digestibility, microbial protein synthesis, nitrogen utilization and milk production of dairy cows was evaluated. Twelve Holstein cows were blocked by days in milk and distributed in three 4 × 4 Latin squares. Diets were formulated to be isonitrogenous and contained 550 g maize silage/kg dry matter (DM). Treatment diets were no SFM (CON) or 70, 140 and 210 g/kg DM of SFM replacing fixed mixture of SBM and WM (536 and 464 g/kg of the mixture, respectively). The inclusion of SFM in diet did not affect DM intake, but intake of rumen degradable protein increased linearly. Inclusion of SFM reduced or tended to reduce total-tract digestibility of non-fibre carbohydrate, total digestible nutrients and excretion of purine derivatives. Milk production, milk protein content and efficiency of nitrogen use for lactation were reduced with increasing levels of SFM in the diet. The use of non-decorticated SFM as a replacement for SBM–WM mixture in diet reduces performance and efficiency of nutrient use in lactating dairy cows. The outcome of the current study is attributed to reduced fibre digestibility in SFM hulls. Therefore, future studies should evaluate the use of decorticated SFM.

Phenological and aerobiological research into major crops is of great value in adapting traditional processes to the new conditions prompted by global climate change. Data on flowering phenology and airborne pollen have also proved useful for harvest forecasting purposes. The current paper reports on an agrometeorological study carried out in the Montilla-Moriles Protected Designation of Origin area (Córdoba, southern Spain) in 2015 and 2016. The study focused on four grape cultivars produced at seven local vineyards (Pedro Ximénez, the most widely grown in the area; Verdejo; Muscat blanc à petits grains; and Chardonnay, which has been recently introduced). Phenological observations were performed on a weekly basis using the Biologische Bundesanstalt, Bundessortenamt und Chemische Industrie scale adapted for grapevine. Airborne pollen concentrations were monitored using one Hirst-type volumetric sampler and seven passive samplers. Airborne pollen was mainly detected in vineyards during inflorescence emergence and flowering. Year-on-year differences in climatic conditions led to differences in airborne pollen levels. The main variables affecting pollen concentrations were dew point and temperature. The life-cycles recorded here were shorter than in temperate climates but longer than in tropical climates. In terms of flowering period, the cultivars studied here were classed as ‘early cultivars’. Data obtained using local passive samplers located directly in the vineyard confirmed that the airborne pollen concentrations recorded by the volumetric sampler were representative of the study area.

The use of fast and non-destructive techniques for identifying sugarcane varieties enables the development of automatic sorting systems, contributing towards improving pre-processing steps in the alcohol and sugar industries. In this context, principal component analysis (PCA), factorial discriminant analysis (FDA), stepwise forward discriminant analysis (SFDA) and partial least-squares discriminant analysis (PLS-DA) were used to classify four Brazilian sugarcane varieties based on visible/near infrared (Vis/NIR) spectral reflectance measurements (450–1000 nm range) of stalks. All wavelengths contributed towards discriminating the sugarcane varieties, but the 600–750 nm range was most relevant. When evaluating PCA results considering the four sugarcane varieties, two of them overlapped and it was only possible to use classifiers of three varieties. Factorial discriminant analysis, PLS-DA and SFDA reached correct classifications of 0.81, 0.82 and 0.74, respectively, when considering the external validation data and the four sugarcane varieties evaluated. Results showed that Vis/NIR spectroscopy combined with discriminating methods is a promising tool for non-destructive and fast sugarcane variety classification, which can be used in the agro-food industry or directly in the field.

Rice has the lowest grain protein content (GPC) among cereals. Efforts have been made to improve GPC through the modified bulk-pedigree method of selection. A total of 1780 F8 recombinant lines were derived in the year 2013 from five different cross combinations involving two high-GPC landraces, namely ARC10075 and ARC10063, three high-yielding parents, namely Swarna, Naveen and IR64, and one parent, namely Sharbati, known for superior grain quality with high micronutrient content. Near-infrared spectroscopy was used to facilitate high-throughput selection for GPC. Significant selection differential, response to selection and non-significant differences between the predicted and observed response to selection for GPC and protein yield indicated the effectiveness of this selection process. This resulted in lines with high GPC, protein yield and desirable levels of amylose content. Further, based on high mean and stability for GPC and protein yield over the environments in the wet seasons of 2013, 2014 and the dry season of 2014, 12 elite lines were identified. Higher accumulation of glutelin fraction and non-significant change in prolamin/glutelin ratio in the grain suggested safe guarding of the nutritional value of rice grain protein of most of these identified lines. Since rice is the staple food of millions, the output of breeding for high GPC could have a significant role in alleviating protein malnutrition, especially in the developing world.

Understanding the rumen microbial ecosystem requires the identification of factors that influence the community structure, such as nutrition, physiological condition of the host and host–microbiome interactions. The objective of the current study was to describe the rumen microbial communities before, during and after a complete rumen content transfer. The rumen contents of one donor cow were removed completely and used as inoculum for the emptied rumen of the donor itself and three acceptor cows under identical physiological and nutritional conditions. Temporal changes in microbiome composition and rumen function were analysed for each of four cows over a period of 6 weeks. Shortly after transfer, the cows showed different responses to perturbation of their rumen content. Feed intake depression in the first 2 weeks after transfer resulted in short-term changes in milk production, methane emission, fatty acid composition and rumen bacterial community composition. These effects were more pronounced in two cows, whose microbiome composition showed reduced diversity. The fermentation metrics and microbiome diversity of the other two cows were not affected. Their rumen bacterial community initially resembled the composition of the donor but evolved to a new community profile that resembled neither the donor nor their original composition. Descriptive data presented in the current paper show that the rumen bacterial community composition can quickly recover from a reduction in microbiome diversity after a severe perturbation. In contrast to the bacteria, methanogenic communities were more stable over time and unaffected by stress or host effects.

Intake, digestibility, nitrogen (N) balance, microbial protein synthesis, weight gain, yields of the main commercial cuts and carcass morphometric measurements were evaluated in lambs fed diets containing different levels of chitosan. Sixty Santa Inês crossbred sheep with an average body weight (BW) of 24 ± 2.2 kg were assigned to three treatments (diets containing 0, 136 or 272 mg chitosan/kg BW) in a completely randomized design. There was no effect of chitosan on dry matter (DM) intake. Ingested and retained N showed a quadratic response, with the highest values estimated at the chitosan levels of 142 and 152 mg/kg BW, respectively. Similar to N balance, microbial protein synthesis showed the same quadratic response, in which the level of 136 mg/kg BW resulted in higher synthesis when compared with the other levels. No effect of chitosan was detected on average daily gain, final weight, or carcass variables (hot carcass weight, cold carcass weight, yield of commercial cuts and morphometric measurements of the carcass). Conformation, visceral fat content and fatness of carcasses were also not altered by the use of chitosan. Chitosan improves the digestibility of DM, crude protein and neutral detergent fibre, and increases N balance and microbial protein synthesis but does not change the production performance of feedlot lambs.

Drought represents one of the major constraints on agricultural productivity and food security and in future is destined to spread widely as a consequence of climate change. Research efforts are focused on developing strategies to make crops more resilient and to mitigate the effects of stress on crop production. In this context, the use of root-associated microbial communities and chemical priming strategies able to improve plant tolerance to abiotic stresses, including drought, have attracted increasing attention in recent years. The current review offers an overview of recent research aimed at verifying the role of arbuscular mycorrhizal fungi and chemical agents to improve plant tolerance to drought and to highlight the mechanisms involved in this improvement. Attention will be devoted mainly to current knowledge on the mechanisms involved in water transport.

A total of 1180 1-day-old Japanese quail (Coturnix japonica) chicks were used to investigate the effect of feathering rates on growth and slaughter traits. Feathering rates were classified based on the results of stepwise regression using numbers and lengths of both primaries and secondaries and tail length at 7 and 10 days of age as predictors. At 7 and 10 days old, number of primary feathers had phenotypically positive low correlations (rps) with body weight (BW), whereas number of secondaries had positive medium rps with BW at different ages. Lengths of primary, secondary and tail feathers had highly positive rps with BW traits at different ages. Results of stepwise multiple regressions indicated that BW at 14, 21 and 28 days of age can be predicted using lengths of secondary and tail feathers at 10 days old, number of secondaries at 7 days old and length of secondaries at 7 days old, respectively. Body weight at 35 days of age can be predicted using number of primaries, lengths of secondaries and tail at 10 days of age and number of secondaries at 7 days of age. Higher BWs were obtained in the fast-feathering class from 21 up to 35 days of age than in other groups, whereas the slow-feathering class had the lowest BW. Significant class differences were found for carcass weight, feather weight and dressing% favouring the fast- over the slow-feathering class. Therefore, early feathering rates improved BW at later ages and slaughter traits in Japanese quail.

Measurement of water consumption and urinary nitrogen (UN) excretion of individual grazing ruminants is difficult, time-consuming and expensive. Therefore, prediction and modelling are critical for research to improve N and water use efficiency. The objective of the current work was to use a mechanistic model of a grazing ruminant, MINDY, to represent drinking and urination diurnal patterns, and the resulting pattern of UN excretion. This work is primarily an integration of existing knowledge of basic urination physiology and water dynamics in ruminants. MINDY reproduces observed patterns of urination achieving the correct temporal occurrence, relative volumes and nitrogen (N) concentration of individual urination events for a grazing dairy cow, comparable with those reported in the literature. The model simulates daily water imbibed and UN realistically, as well as ingestion rates for herbages with different protein content and contrasting grazing managements. Results of a cross-validation indicate that the root mean square prediction error and mean absolute error as % of the observed mean, respectively, were 26 and 23% for daily water imbibed, 26 and 27% for urination volume, and 25 and 19% for the frequency of urination. Although further parameterization and validation are needed, for a new development in an exploratory model like MINDY, these numbers are encouraging and reflect that the concepts encoded capture many of the underlying biological mechanisms that drive the diurnal pattern and daily UN excretion, as well as thirst, acceptable.

A 4-year (2010–2013) plot study was undertaken to evaluate the effect of nitrogen (N) fertilizer rate (0, 60, 120, 196 and 240 kg N/ha/year) on seasonal responses and species persistency in frequently and tightly grazed (⩽4 cm) grass-only (GO) and grass white clover swards (GWc). Increasing N application rate increased herbage removed and pre-grazing sward height. Cows frequently grazed the GWc tighter than the GO. Increasing N rate reduced clover content, especially during the warmest months of the year, but less so up to 120 kg N/ha/year. The GWc had greater amounts of herbage removed than GO in the May–September period but the effect was less as N rate increased. Cumulative herbage removed from GWc was greater than GO swards receiving the same N rate and herbage quality was better in GWc than GO. Such effects were reduced as swards aged and with increasing N rate. It was concluded that under frequent and tight grazing management: (1) clover inclusion increased annual herbage removed; (2) herbage removed from GWc swards receiving no N was the same as the GO sward receiving 240 kg N/ha, and greater for the 240 GWc swards than the 240 GO swards; (3) clover inclusion benefits were mainly from summer onwards; (4) the management strategy applied in the current experiment may be capable of alleviating the detrimental effect of N fertilizer on clover, to a point between 60 and 120 kg N/ha.

To investigate the effects of soybean isoflavone (SI) on immunity in infectious bursal disease virus (IBDV)-infected broilers, chicks were fed the same basal diet supplemented with 0 (non-infected control), 0 (infected control), 10, 20 or 40 mg/kg SI for 44 days. At 21 days old, chickens were inoculated with bursal infectious dose causing 50% morbidity of the IBDV BC 6/85 strain by the eye-drop and nasal route (except for non-infected controls). Results showed that, over 1–23 days post-infection (dpi), there was a significant interaction between SI supplementation level and time: high-level SI supplementation increased peripheral T lymphocyte proliferation, percentages of CD3+, CD4+ and CD8+ T lymphocytes, CD4+ to CD8+ ratio, serum concentrations of IgA, IgM and IgG, and IBDV antibody titres. Except for serum IgA and IgM, these variables increased over time with far higher values at 23 dpi than earlier. Compared with non-infected controls, IBDV inoculation decreased peripheral T lymphocyte proliferation at 3 dpi, percentages of CD3+, CD4+ and CD8+ T lymphocytes, and serum IgG, IgM concentration at 23 dpi, and increased IBDV antibody titres at 7, 15 and 23 dpi. Supplemental SI quadratically increased peripheral T lymphocyte proliferation, CD4+ to CD8+ ratio and serum IgA concentration at 3 dpi, percentages of CD3+, CD4+ and CD8+ T lymphocytes at 3 and 23 dpi, and serum IgM concentration and IBDV antibody titres at 23 dpi. These results indicate that dietary SI improved cellular and humoral immunity of IBDV-infected birds and may enhance resistance of Yellow-feathered broilers to infectious diseases.

Differences in forage nutritive value between morning and afternoon are related to patterns of dehydration and carbohydrate accumulation throughout the day. In this way, management strategies that maximize grazing time during the afternoon could increase forage nutritive value and consequently nutrient intake. The aim of the current experiment was to evaluate the effect of the time of day (06.00 h [designated AM] or 15.00 h [PM]) that cattle are moved to a new paddock on forage nutritive value, grazing behaviour and animal performance of beef cattle on rotationally stocked Marandu palisadegrass (Brachiaria brizantha cv. Marandu Syn. Urochloa brizantha cv. Marandu) pastures. A spring and summer study was conducted in Pirassununga, SP, Brazil from October 2012 to March 2013 (182 days). Treatments were distributed in a randomized complete block design with three replications. Herbage mass, morphological composition, herbage allowance and stocking rates were similar between treatments during spring and summer. Moving animals to a new paddock, regardless of the time of day – 06.00 h (AM) or 15.00 h (PM) – stimulated grazing, modifying the distribution of meals throughout the day. However, compensatory mechanisms among grazing time, bite rate and forage nutritive value throughout the day operated in order to generate similar performance between animals offered a new paddock in the morning or in the afternoon.

A collection of 45 isolates was created based on bacteria isolated from maize, broad bean, wheat, rye and wild plants such as horsetail and burdock. The aim of the current study was to isolate the bacteria, and then identify and assess the degree of genomic diversity. The molecular identification of microsymbionts isolated from the endosphere (root and stem) of plants grown in agricultural soils was performed using 16S rRNA gene sequencing. To evaluate the genomic diversity between strains that occurred in multiple host plants, 18 bacterial isolates representing four species were subjected to denaturing gradient gel electrophoresis. The 16S rDNA analysis assigned all bacterial isolates to ten genera, from which Rhizobium was represented by 19 isolates, Delftia by 11, Agrobacterium by five, Stenotrophomonas by three, Brevundimonas by two and Novosphingobium, Variovorax, Collimonas, Achromobacter and Comamonas by only one isolate. Furthermore, the genomic diversity of the 11 isolates of Delftia sp. was assessed using the BOX – polymerase chain reaction (BOX-PCR) and enterobacterial repetitive intergenic consensus – PCR (ERIC-PCR) methods. Typing patterns and analysis using BOX-PCR and ERIC-PCR data demonstrated similarities among the tested isolates. In general, the results obtained with BOX-PCR and ERIC-PCR were in good agreement. However, a greater degree of differentiation patterns of the genomic DNA was obtained in the ERIC-PCR method.

Plant height and lodging resistance can affect rice yield significantly, but these traits have always conflicted in crop cultivation and breeding. The current study aimed to establish a rapid and accurate plant type evaluation mechanism to provide a basis for breeding tall but lodging-resistant super rice varieties. A comprehensive approach integrating plant anatomy and histochemistry was used to investigate variations in flexural strength (a material property, defined as the stress in a material just before it yields in a flexure test) of the rice stem and the lodging index of 15 rice accessions at different growth stages to understand trends in these parameters and the potential factors influencing them. Rice stem anatomical structure was observed and the lignin content the cell wall was determined at different developmental stages. Three rice lodging evaluation models were established using correlation analysis, multivariate regression and artificial radial basis function (RBF) neural network analysis, and the results were compared to identify the most suitable model for predicting optimal rice plant types. Among the three evaluation methods, the mean residual and relative prediction errors were lowest using the RBF network, indicating that it was highly accurate and robust and could be used to establish a mathematical model of the morphological characteristics and lodging resistance of rice to identify optimal varieties.

The objective of the current experiment was to determine the effects of high-concentration phytase (5000 FTU/kg) feeding to diverse lines of chickens fed phosphorus (P) adequate maize–soybean meal diets (4.5 g/kg non-phytate P) on the performance and intestinal immune function. Performance was measured for outbred broiler (Ross 308) and inbred Fayoumi lines over 0–21 days, and duodenum and ileum were harvested for the determination of mucin-2, interleukin (IL)-1β and IgA mRNA by quantitative reverse transcription polymerase chain reaction. Over the 0–7-day period, there was a significant line × diet interaction, as high phytase supplementation increased broiler average daily gain (ADG), but had no effect on Fayoumi ADG. Treatment of diets with phytase increased expression of the mucin-2 gene in the duodenum mucosa. There were significant interactions between line and age, and line, diet and age on duodenal expression of the IL-1β gene as phytase supplementation of the broiler line reduced IL-1β in comparison to control fed broilers without change in the Fayoumi line. Overall, the addition of a high concentration of phytase to broilers fed adequate concentrations of non-phytate P resulted in improved growth performance early with a reduction in this effect over time. Mucosal mucin-2 expression was increased with high-concentration phytase feeding across both lines, but IL-1β mRNA expression was reduced in the duodenum of broilers fed high concentrations of phytase, suggesting that the increased performance noted might be related to decreased inflammation.

The current study was conducted to evaluate the component composition, anti-nutritional factors, in vitro gas production (GP) and methane (CH4) production profiles of fruit by-products (pineapple pulp, mango seed kernels, banana and papaya peel, Moringa stenopetala and Moringa oleifera seeds) and leaves of root crops (sweet potato [Ipomoea batatas], cassava [Manihot esculenta], yam [Dioscorea abyssinica], enset [Ensete ventricosum] and samma [Urtica simensis]). Root crop leaves had high crude protein (CP) ranging from 211 to 318 g/kg dry matter (DM) in yam and samma, respectively. M. stenopetala seeds contained the highest CP (450 g/kg DM). Samma leaves were rich in calcium (58.6 g/kg DM) and iron (1186 mg/kg DM). Leaves of root crops had similar concentrations of essential amino acids with appreciable values. Total phenols were highest in mango seed kernels (158 g/kg DM). The asymptotic GP at 96 h incubation of pineapple pulp, papaya and banana peel was 397, 358 and 279 ml/g DM, respectively, and differed significantly from each other. Sweet potato and yam leaves produced 238 and 225 ml/g DM GP, respectively, being significantly higher than those of other root crops. CH4 production was significantly lowest in Moringa seeds, mango seed kernels and sweet potato leaves. In conclusion, fruit by-products have the potential as energy sources and root crop leaves as protein supplements for ruminant and non-ruminant animals. Moringa seeds, mango seed kernels and sweet potato leaves were identified as potential candidates in mitigating CH4 emissions in tropical livestock with animal-based experiments recommended to validate the in vitro findings.

In the current regional-scale study, the model DSSAT CROPGRO was applied in order to simulate the cultivation of industrial tomato and to estimate the green water (GW), blue water (BW), blue water requirement (BWR) and water footprint (WFP) through a dual-step approach (with and without full irrigation). Simulation covered a period of 30 years for three climate scenarios including a reference period and two future scenarios based on forecast global average temperature increases of 2 and 5 °C. The spatial patterns of indicators relating to the whole territory of Puglia region (Southern Italy), characterized by the high evaporative demand of the atmosphere, are discussed and analysed. Considering the climatic pattern, the analysis was developed for three areas (Northern, Central and Southern). Future scenarios affected all indicators significantly, particularly the Northern area, characterized by higher temperature and rainfall anomalies. Under the A5 scenario, compared with the baseline, this area was forecast to have a large increase of BW (+30%) and reduction in yield (−20%). As a consequence, the BWR and WFP were predicted to increase dramatically, up to 40 and >65%, respectively. On the other hand, Central and Southern areas, with lower anomalies of temperature and rainfall, were forecast to be less vulnerable to climate change. The distributed analysis performed could be important for water policy, allowing most efficient allocation of scarce water resources and concentrating them where the WFP is lowest, or in other words, water use efficiency is highest.

The objective of the current experiment was to determine the effects of increasing levels of palm kernel cake in a finishing diet on feed intake, digestibility, performance, ingestive behaviour and carcass traits in zebu bulls. Thirty-two Nellore bulls (420 ± 25.0 kg initial body weight [BW] and 24-months-old), were assigned randomly to individual pens with four treatments (0, 70, 140 and 210 g/kg of palm kernel cake by total dry matter [DM]) and eight replicates per treatment. The inclusion of palm kernel cake linearly decreased DM, crude protein and non-fibrous carbohydrate intake and increased ether extraction intake and digestibility. There was a linear decrease in final BW and hot carcass weight (HCW) associated with palm kernel cake inclusion in the bull diet. However, the gain : feed ratio was similar among the diets. Eating and rumination rates (g DM or neutral detergent fibre/h) were reduced, whereas the total chewing time and idling (min/day) were not affected by palm kernel cake inclusion. There were no effects of palm kernel cake inclusion on most quantitative carcass characteristics and qualitative carcass attributes (subcutaneous fat thickness, longissimus muscle area, colour, texture and marbling). The inclusion of palm kernel cake (up to 210 g/kg total DM) in beef cattle finishing diets decreased eating and rumination rates, thereby decreasing average daily gain and, consequently, final BW and HCW. However, qualitative carcass attributes were not affected by the use of palm kernel cake.