Understanding the mechanisms underlying net ecosystem CO2 exchange (NEE) in mountain grasslands is important to quantify their relevance in the global carbon budget. However, complex interactions between environmental variables and vegetation on NEE remain unclear; and there is a lack of empirical data, especially from the high elevations and the Mediterranean region. A chamber-based survey of CO2 exchange measurements was carried out in two climatically contrasted grasslands (montane v. subalpine) of the Pyrenees; assessing the relative contribution of phenology and environmental variables on CO2 exchange at the seasonal scale, and the influence of plant functional type dominance (grasses, forbs and legumes) on the NEE light response. Results show that phenology plays a crucial role as a CO2 exchange driver, suggesting a differential behaviour of the vegetation community depending on the environment. The subalpine grassland had a more delayed phenology compared to the montane, being more temperature than water constrained. However, temperature increased net CO2 uptake at a higher rate in the subalpine than in the montane grassland. During the peak biomass, productivity (+74%) and net CO2 uptake (NEE +48%) were higher in the subalpine grassland than in the montane grassland. The delayed phenology at the subalpine grassland reduced vegetation's sensitivity to summer dryness, and CO2 exchange fluxes were less constrained by low soil water content. The NEE light response suggested that legume dominated plots had higher net CO2 uptake per unit of biomass than grasses. Detailed information on phenology and vegetation composition is essential to understand elevation and climatic differences in CO2 exchange.

Biodegradation of chlorpyrifos under the influence of fertilizer application and climate factors such as elevated CO2, temperature and moisture was studied. Soybean was grown in control, inorganic, organic and integrated (both inorganic and organic) fertilized fields. Rhizospheric soils collected during the vegetative growth phase were amended with chlorpyrifos (10 μg/g soil) and incubated under different climate factors. The climate factors were CO2 concentration (400, 800 ppm), temperature (25, 45°C) and moisture-holding capacity (60, 100%). Chlorpyrifos degradation rate varied from 0.28 to 0.65 μg/g soil/d. The abundance of 16S rRNA gene copies of eubacteria varied from 13 × 106 to 7 × 105/g soil. Actinomycetes-specific 16S rRNA gene copies were in the range of 62.5 × 105 to 18.5 × 103/g soil. Microbial abundance was high in organic amended soil and low in control soil irrespective of climate factors. Elevated CO2 and high temperature inhibited (P < 0.05) chlorpyrifos degradation rate and the abundance of 16S rRNA genes of eubacteria and actinomycetes. Chlorpyrifos degradation followed as: organic > integrated > inorganic > control. The degradation rate was positively correlated (P < 0.01) with the soil organic C, available N, water-stable aggregates and mean weight diameter of the soil aggregates of soil. Principal component analysis denoted temperature and fertilizer as the major components of variation. The study highlights that elevated CO2 and temperature affect chlorpyrifos biodegradation; however, the effect can be alleviated by the amendment of organic fertilizer.

The current research investigated the present and future projected distribution of rice (Oryza sativa L.) based on climatic suitability under three representative concentration pathways (RCPs) of the Intergovernmental Panel on Climate Change using maximum entropy (MaxEnt) modelling. The MaxEnt models predict that rice distribution in Bhutan will undergo major changes in terms of spatial range shift of varying magnitudes by 2060. Under the anthropogenic radiative forcing of RCP2.6, RCP4.5 and RCP8.5, ecological space of rice is predicted to change between 1 and 43%. Major changes are likely to take place in major rice-growing ecological zones of the country. This is likely to have a negative impact on the livelihood and food security of the people as crop production might start declining due to unfavourable climatic factors. Therefore, the findings of this study could prove beneficial for forecasting focus sites requiring interventions, including future climate research, planning, policy formulation and conservation of natural resources.

Methane (CH4) consumption in agricultural soil is imperative for the mitigation of climate change. However, the effect of tillage and cropping systems on CH4 consumption is less studied. Experiments were carried out in Madhya Pradesh, India with soybean-wheat (SW), maize-wheat (MW) and maize-gram (MG) cropping systems under conventional tillage (CT) and no-tillage (NT). Soybean/maize was cultivated during the kharif season (July–October) and wheat/chickpea in the rabi season (October–March) for 9 years consecutively. Soil samples were collected during vegetative growth stages of soybean and maize from different cropping systems. Methane consumption, the abundance of methanotrophs as particulate methane monooxygenase (pmoA) gene copies, soil and crop parameters were estimated. Methane consumption rate was higher in NT and upper soil layer (0–5 cm) than CT and 5–15 cm depth. Methane consumption rate k ranged from 0.35 to 0.56 μg CH4 consumed/g soil/d in the order of MW>SW>MG in 0–5 cm. The abundance of pmoA gene copies ranged from 43 × 104/g soil to 13 × 104/g soil and was highest in MW-NT and lowest in MG-CT. Available nitrogen, phosphorus and potassium were higher in 0–5 cm than in 5–15 cm depth. Soil and plant parameters and abundance of pmoA genes correlated significantly and positively with CH4 consumption rate. No-tillage stimulated CH4 consumption compared to CT irrespective of cropping system and CH4 consumption potential was highest in MW and lowest in MG. However, the magnitude of the positive effect of NT towards CH4 consumption was higher in SW and MG than MW.

Low temperature is one of the critical factors for determining agricultural production. Therefore, the main objective was to develop the durum wheat lines, which are tolerant to cold particularly in Central Anatolia. The recombinant inbred lines (RILs) (141) derived from F6 progeny of durum wheat, developed from Kunduru-1149 (female parent) and Cham-1 (male parent) cross, were characterized in terms of their cold tolerance both in the field and under controlled (in growth chamber) conditions. A 0–9 scale was used for the visual evaluation of cold damage under field conditions, and a quantitative measure of photochemical efficiency (Fv/Fm = variable fluorescence/maximum fluorescence) method was used for the evaluation of cold damage under controlled conditions. Seventeen RILs displayed the scores within the range of 1–2.5 in 0–9 scale evaluation, while 41 RILs showed the scores equal to or higher than 0.70 approaching to optimal (~0.83) in Fv/Fm evaluation. Some quality parameters tested and some gliadin fragments and random amplified polymorphic DNA loci showed meaningful correlations with the data of 0–9 scale and Fv/Fm ratios from lower to the medium level. The RILs considered as cold resistant; might have the potential to be used as parental lines to develop cold-resistant durum wheat varieties in the future durum wheat-breeding programmes.

Tropical soils tend to harden during drying due to the generally low content of free-iron and organic carbon, combined with high fine sand and silt proportions. It was hypothesized that the change in soil physical condition induced by the addition of a leguminous mulch in cohesive tropical soil enriched with calcium may mitigate soil hardening through wetting and drying cycles by rain or irrigation, thereby improving the soil rootability. A leguminous mulch was added in different concentrations to a structurally fragile tropical soil enriched with calcium, which then had different irrigation intervals. The treatments were with or without mulch (10 t/ha), with or without added nitrogen (100 kg/ha at 2 intervals) and two irrigation intervals. In 2015 the irrigation intervals were either 4 or 8 days, and in 2016 they were either 6 or 9 days. Two years were used in the attempt to achieve greater differences, as for tested variables, between treatments. Maize planted in these soil treatments was measured for physiological performance, water use efficiency and yield. Mulch used on structurally fragile tropical soil enriched with calcium was found to delay increased penetration resistance from hardening by wet/dry cycles. In this context, an improved soil rootability led to an enlargement of the leaf area index, greater nitrogen uptake and increased CO2 assimilation. This had important physiological consequences due to the positive effect on increased dry matter production and maize yield. In addition, these results suggested that mulch, used with urea, can delay the water supply for 3 or 4 days due to improvements in soil rootability caused by calcium and organic matter interactions. This may be crucial to a region where small intervals without rain are increasingly common due to global climate change. Therefore, due to a greater water use efficiency, this strategy may be a profitable way to increase crop productivity in tropical conditions rather than increasing water and nutrient application alone.

The development of resilient cropping systems with high yield stability is becoming increasingly important due to future climatic and agronomic challenges. Consequently, it is essential to compare the effects of different agronomic management practices, such as cropping sequences and nutrient supply, on the stability of crop yields. Long-term experiments are a valuable resource for investigating these effects, as they provide enough time to accurately estimate stability parameters. The objective of the current study was to compare the effects of different cropping sequencing (#1: continuous v. rotational), fertilization (#2: mineral v. organic) and straw management techniques (in the case of continuous wheat; #3: removal v. incorporation) on the yield stability of winter wheat; yield risk (the probability of yield falling below a threshold yield level) and inter-annual yield variability were used as stability indicators of the effects. Long-term yield data from the Broadbalk Wheat Experiment (Rothamsted, UK) were analysed using a mixed model. Overall, the results showed that rotational cropping combined with sufficient mineral N fertilizer, with or without organic manure, ensured stable wheat yields while reducing yield risk. In contrast, higher yield risks and inter-annual yield variabilities were found in continuous wheat sections with less mineral N fertilizer or with organic manure only.

Plant cyclophilin (CYP) is related to chloroplast photoprotection, redox and other growth and developmental regulatory processes and responds to stress and improves tolerance to saline–alkali stress. Besides, it exerts peptidyl-prolyl cis/trans isomerase activity to participate in protein synthesis and folding. In this study, Northern blot was used to analyse the CsCYP1A gene (a CYP gene isolated from a Chlorella species) (accession number: KY207381) of tolerant Chlorella vulgaris in soda saline–alkali soil. The result showed that the expression of the CsCYP1A gene was induced by NaHCO3, NaCl and sorbitol. Additionally, Agrobacterium tumefaciens was used to infect the callus of rice (Oryza sativa var. Longjing11) for genetic transformation. Molecular detection confirmed that transgenic seedlings overexpressing CsCYP1A were obtained by hygromycin selection. Treatment with NaCl and NaHCO3 at the five-leaf stage was performed in the seedlings, and the results showed that there were significant differences between the CsCYP1A overexpressed rice lines and non-transgenic (NT) Longjing11 in terms of plant height, fresh weight, chlorophyll content, malondialdehyde content and ascorbate peroxidase activity. The CsCYP1A overexpression rice lines had higher tolerance to NaCl and NaHCO3 than NT. The current findings indicate that CsCYP1A can enhance the tolerance of rice to saline–alkali stress possibly through its involvement in reactive oxygen scavenging pathways.

In the present study, a new method for a decision-support system for fungicide administration against the pathogen Botrytis cinerea in vineyards was developed based on Integrated Pest Management principles which identified an infection risk before the appearance of disease symptoms. The proposed method is based on the combination of (i) the phenological observations of the main susceptible stages to infection, (ii) the airborne spores monitoring, (iii) the forecasting of the suitable meteorological conditions for B. cinerea spore germination during the subsequent 4–6 days after the spore detection. Aerobiological, phenological and meteorological analyses were carried out using data from 2008 to 2015 in a vineyard of Northwestern Spain. Aerobiological spore data were obtained using a Lanzoni VPPS-2000 pollen-spore trap. Phenological observations were conducted on 22 plants of Treixadura cultivar following the BBCH (Biologische Bundesanstalt für Land und Forstwirtschaft, Bundessortenamt und CHemische Industrie) scale. The Magarey generic fungal model was applied for the identification of the main meteorological suitable periods for infection within the susceptible phenological stages of flowering and ripening of berries. Our results showed that climatic conditions favoured fungal development during flowering, although a higher incidence of B. cinerea infection risk-periods occurred during the prior-to-harvest stage of ripening of berries, the most susceptible phenological stage to B. cinerea infection obtained by the proposed methodology. This approach enables more precise targeting in pesticide spraying and reduction in pesticide application from 4–5 to 2–3 times per year at our commercial study. It also illustrates the real-world benefits of integrated disease risk modelling.

Seed priming is a pre-sown treatment and it is often used to improve the performance of plants in any environment, especially germination. In the current study, various concentrations of nitric oxide (NO) were used to evaluate its role for the induction of physiological variations within seven different wheat (Triticum aestivum L.) genotypes. Two experiments were conducted during 2013 and 2014 and the data were statistically analysed for significance. All these genotypes after treatment with sodium nitroprusside (SNP) as NO donor at 10−4 and 10−5 M concentrations were sown following randomized complete block design with triplicates in the fields of District Muzaffarabad, Pakistan. The concentration of NO at 10−4 M showed promising results and most of the studied characters were found improved compared to control. Wheat varieties primed with 10−4 M SNP showed highest germination speed and germination percentage. NARC-2011 and Uqab-2002 showed much improvement in physiological attributes at both concentrations of NO priming. However, Uqab-2002 and Punjab-2011 showed a significant increase in chlorophyll contents and leaf moisture content with 10−4 and 10−5 M SNP priming compared to control. Highest relative water content was observed within unprimed Lasani, whereas the relative injury was found to be decreased at 10−4 M SNP primed Faisalabad-2008. Wheat varieties Punjab-2011 and Faisalabad-2008 showed the highest increase in grain yield and biological yield by 10−4 M SNP. Hence, it is concluded that sowing of crops after priming at 10−4 M NO concentration can improve the germination, biochemistry and physiology that ultimately lead to an increase in crop yield.

Lactic acid bacteria (LAB) are usually employed as alfalfa silage inoculants to obtain high-quality feed for animal husbandry. However, the effects of these inoculants are still unclear and need to be studied extensively. Therefore, the objective of this meta-analysis was to quantitatively summarize published research studies that assess the effects of homofermentative (HoLAB) and heterofermentative lactic acid bacteria (HeLAB) on fermentation parameters, nutritive value, microbiological composition and aerobic stability of alfalfa silage. PubMed, ScienceDirect and Scopus have been screened for articles published from 1980 to 2018. The criteria for inclusion were: randomized and controlled trials using alfalfa silage and published in peer-reviewed journals. It was found that inoculation with LAB decreased silage pH, neutral detergent fibre, acid detergent fibre and ammoniacal nitrogen, while it increased dry matter and crude protein compared to control in the pooled raw mean difference random-effect model. Additionally, LAB inoculation decreased acetate, propionate, ethanol and butyrate concentrations, whereas it increased lactate. In addition, inoculants reduced the counts of yeasts and moulds. Lastly, LAB inoculation improved aerobic stability. To the best of our knowledge, this is the first meta-analysis that aims at comparing the application of HoLAB and HeLAB for alfalfa silage. In the pool estimate, positive effects attributable to the application of microbial silage inoculants were found in most of the evaluated parameters; supporting the importance of applying both types of inoculants to improve forage preservation for the livestock industry.

Changes in soil bulk density (BD), soil organic carbon (SOC) content, SOC stocks and soil labile organic C fractions (mineralizable C (Cmin), microbial biomass C (MBC), dissolved organic C (DOC), particulate organic C (POC), light fraction organic C (LFOC) and permanganate oxidizable C (KMnO4-C)) were explored over 3 years in a double-cropping rice system of southern China. Five organic and inorganic nitrogen (N) inputs were used: (1) 100% from chemical fertilizer (M0), (2) 30% from organic manure, 70% from chemical fertilizer (M30), (3) 50% from organic manure, 50% from chemical fertilizer (M50), (4) 100% from organic manure (M100) and (5) without N fertilizer input, as control (CK). All organic manure treatments decreased BD significantly in the 0–20 cm soil layer compared with CK. The SOC content and stocks with organic manure were significantly higher than in M0 or CK; also, the cumulative amount of SOC stocks in M30 and M50 increased at the plough layer, compared with CK. The non-labile C content increased significantly and the percentage of labile C were significantly higher with organic manure application than in M0 or CK. The soil carbon management index (CMI) also increased significantly under the application of organic manure. Therefore, application of organic manure can increase the pool of stable C in surface layers, and increase content and percentage of labile C. Based on soil carbon storage and CMI, the combined application of 30 or 50% N of organic manure with chemical fertilizer improves carbon cycling services and soil quality in southern China paddy soil.

In this study, sows were fed 200 (LD), 800 (ND) and 3200 (HD) IU of vitamin D3/kg basal diet during pregnancy (from 41 d to birth), respectively. All their offspring pigs were fed the same vitamin D3 replete die. At 150 days of age, a total of 18 offspring pigs (six offspring pigs per maternal diet group, sex balance) were weighed and slaughtered to investigate effects of maternal vitamin D3 during pregnancy on fatty acids synthase (FASN) and hormone-sensitive lipase (LIPE) expression in offspring pigs. The results showed that LD offspring pigs had higher FASN mRNA expression and the ratio of FASN/LIPE mRNA expression in subcutaneous adipose tissue, as well as higher LIPE mRNA expression of longissimus dorsal muscle, whereas, had lower the ratio of FASN/LIPE mRNA expression in longissimus dorsal muscle compared with ND or HD offspring pigs, respectively. Meanwhile, LD offspring pigs had higher carcass fat, average backfat thickness (ABFT), serum insulin and leptin levels, lower intramuscular fat (IMF), serum free fatty acid and triglycerol levels compared with ND or HD offspring pigs. In addition, the ratio of FASN/LIPE mRNA expression was negatively correlated with IMF content, and positively correlated to carcass fat content and ABFT in offspring pigs. Meanwhile, FASN mRNA expression was positively correlated with carcass fat content, while negatively correlated with ABFT in offspring pigs. These results suggested that maternal vitamin D3 affected fat accumulation and meat quality by regulating FASN and LIPE mRNA expression in offspring pigs.

This study, conducted at the São Paulo State University feedlot, Dracena campus, Brazil, was designed as a completely randomized block with 2 × 2 factorial arrangement of treatments to evaluate the effects of adding functional oils (FO) or sodium monensin (MON) on feedlot performance, carcass traits, feeding behaviour and rumen morphometrics of Nellore cattle. Ninety-six 20-mo-old Nellore bulls (365.52 ± 39.19 kg) were randomly allocated to 24 pens (n = 4/pen), which were assigned to the treatments: (1) Control (no feed additives); (2) FO (500 ppm); (3) MON (27 ppm); and (4) MON + FO (27 + 500 ppm, respectively). Each treatment was replicated 6 times, and cattle were fed for 105 days. From 0 to 28 days on feed, cattle fed FO had lower dry matter intake (DMI) variation, sorted for medium particles and presented smaller papillae width. The feeding of FO did not negatively impact feedlot performance overall. When MON was added to the diet, cattle had lower DMI overall and 12th rib fat daily gain, and improved gain to feed ratio. The addition of MON to diets improved feedlot performance but reduced the rate of carcass fat deposition. The few effects observed when FO was added to diets were not sufficient to impact feedlot performance.

Recently, Echinacea purpurea and its extracts have gained much interest due to their improvement on meat quality, but little information is available on the application of the purified Echinacea purpurea polysaccharide (4-O-methyl-glucuronoarabinoxylan, 4OMG). Thus, this trial aimed at assessing the effects of dietary supplementation of 4OMG on growth performance, thigh meat quality and small intestine development of broilers. A total of 240 1-day-old female broiler chicks were randomly distributed to four groups with three replicates of 20 within each group. Each group received either 0, 15, 20 or 25 g 4OMG/kg DM of diet. During the entire experiment, broilers had ad libitum access to water and feed, and the feed intake was recorded daily. All broilers were weighed before and end of the experiment. For each group, three pens with a total of 20 broilers were randomly selected to slaughter after 30 days. Increasing dietary supplementation of 4OMG linearly increased final live weight and daily body weight gain (P = 0.013) of broilers, Gain-to-Feed ratio (P < 0.001), muscle pH (P = 0.024) and redness (P = 0.001), but decreased drip loss (P = 0.033), shear force value (P = 0.004) and hardness (P = 0.022) of the thigh meat. Broilers fed diet with higher 4OMG had greater weight index, villus height and ratio of villus height to crypt depth in both duodenum and jejunum. These results indicated that increasing dietary supplementation of 4OMG was beneficial for growth performance, meat quality and development of the small intestine of broilers.

An experiment was conducted to evaluate: (1) the effects of ensiling maize or sorghum grains after reconstitution on readily soluble fraction (a), potentially degradable fraction in the rumen (b) and rate constant for degradation of b (c) of dry matter (DM), organic matter (OM) and starch (STA); and (2) an appropriate incubation time for in situ or in vitro procedures to estimate in vivo digestibility. Four rumen-cannulated Nellore bulls (body weight = 262 ± 19.6 kg) distributed in a 4 × 4 Latin square were used. Diets were based on dry ground maize (DGM); or dry ground sorghum (DGS); or reconstituted ground maize silage; or reconstituted ground sorghum silage. In vitro and in situ incubations of the individual grains and diets were simultaneously performed with in vivo digestibility. In general, reconstituted grains and diets based on reconstituted grains presented greater (P < 0.05) fraction a and lower (P < 0.05) fraction b of DM, OM and STA compared to dry grains and diets based on dry grain. However, the magnitude of response of the reconstitution and ensiling process on DM and OM degradability parameter was greater for maize than that for sorghum. Moreover, no differences (P > 0.05) were observed between DGM- and DGS-based diets for c estimates. The results suggest that the reconstitution process promotes grains protein matrix breakdown increasing STA availability. The incubation times required for in vivo digestibility estimations of DM, OM and STA are 24 h for in situ and 36 h for in vitro procedures.