Schaffner's model of theory reduction has played an important role in philosophy of science and philosophy of biology. Here, the model is found to be problematic because of an internal tension. Indeed, standard antireductionist external criticisms concerning reduction functions and laws in biology do not provide a full picture of the limits of Schaffner's model. However, despite the internal tension, his model usefully highlights the importance of regulative ideals associated with the search for derivational, and embedding, deductive relations among mathematical structures in theoretical biology. A reconstructed Schaffnerian model could therefore shed light on mathematical theory development in the biological sciences and on the epistemology of mathematical practices more generally.

We argue that ‘locality’, perhaps the most mundane term in ecology, holds a basic ambiguity: two concepts of space—nomothetic and idiographic—which are both necessary for a rigorous resurvey to “the same” locality in the field, are committed to different practices with no common measurement. A case study unfolds the failure of the standard assumption that an exogenous grid of longitude and latitude, as fine-grained as one wishes, suffices for revisiting a species locality. We briefly suggest a scale-dependent “resolution” for this replication problem, since it has no general, rational solution.

Could some evidence confirm a conjunction of two hypotheses more than it confirms either of the hypotheses separately? We show that it might, moreover under conditions that are the same for ten different measures of confirmation. Further, we demonstrate that it is even possible for the conjunction of two disconfirmed hypotheses to be confirmed by the same evidence.

Constructive empiricists claim to offer a reconstruction of the aim and practice of science without adopting all the metaphysical commitments of scientific realism. Deflationists about truth boast of the ability to offer a full account of the nature of truth without adopting the metaphysical commitments accompanying substantive accounts. Though the two views would form an attractive package, I argue that the pairing is not possible: constructive empiricism requires a substantive account of truth. I articulate what sort of account of truth and empirical adequacy the constructive empiricist must offer and then show why deflationists cannot uphold such an account.

Although prediction has been largely absent from discussions of explanation for the past 40 years, theories of explanation can gain much from a reintroduction. I review the history that divorced prediction from explanation, examine the proliferation of models of explanation that followed, and argue that accounts of explanation have been impoverished by the neglect of prediction. Instead of a revival of the symmetry thesis, I suggest that explanation should be understood as a cognitive tool that assists us in generating new predictions. This view of explanation and prediction clarifies what makes an explanation scientific and why inference to the best explanation makes sense in science.

How can we make informed decisions about whom to trust given expert disagreement? Can experts on both sides be reasonable in holding conflicting views? Epistemologists have engaged the issue of reasonable expert disagreement generally; here I consider a particular expert dispute in physics, given conflicting accounts from Harry Collins and Allan Franklin, over Joseph Weber's alleged detection of gravitational waves. Finding common ground between Collins and Franklin, I offer a characterization of the gravity wave dispute as both social and evidential. While experimental evidence alone may not have forced resolution of the dispute, there were also credibility-based reasons warranting epistemic trust and distrust. Thus we see how social factors can have evidential significance and how expert disagreement can be reasonable.

There does not seem to be a consistent way to ground the concept of “force” in Cartesian first principles. In this article, I first review the literature on the subject. Then, I offer an alternative interpretation of force—one that seems to be coherent and consistent with Descartes’ project. Not only does the new position avoid the problems of previous interpretations, but it does so in such a way as to support and justify those previous interpretations.

Kuhn made two attempts at providing an evolutionary analogy for scientific change. The first attempt, in The Structure of Scientific Revolutions, is very brief and unstructured; in this article I discuss some of its weaknesses. Alexander Bird takes this attempt more seriously and provides a criticism based on oversimplified evolutionary assumptions. These assumptions prove to be inadequate for the second, more articulate, evolutionary analogy suggested by Kuhn in “The Road since Structure.” I argue, however, that this second Kuhnian attempt is undermined by his inadequate view of biological progress and by his misunderstanding of the concept of ecological niche.

An important class of teleological theories cannot explain the representational content of visual states because they fail to address the relationship between the world, projected retinal stimuli, and perception. A different approach for achieving a naturalized theory of visual content is offered that rejects the traditional internalism/externalism debate in favor of what is termed “empirical externalism.” This position maintains that, while teleological considerations can underwrite a broad understanding of representation, the content of visual representation can only be determined empirically according to accumulated past experience. A corollary is that a longstanding problem concerning the indeterminacy of visual content is dissolved.

This article argues that at least very many judgments of homology rest on prior attributions of selected-effect (SE) function, and that many of the “parts” of biological systems that are rightly classified as homologous are constituted by (are so classified in virtue of) their consequence etiologies. We claim that SE functions are often used in the prior identification of the parts deemed to be homologous and are often used to differentiate more restricted homologous kinds within less restricted ones. In doing so, we discuss recent criticism of this view that has been offered (especially that offered by Paul Griffiths).

I argue that, contrary to the recent claims of physicists and philosophers of physics, general relativity requires no interpretation in any substantive sense of the term. I canvass the common reasons given in favor of the alleged need for an interpretation, including the difficulty in coming to grips with the physical significance of diffeomorphism invariance and of singular structure, and the problems faced in the search for a theory of quantum gravity. I find that none of them shows any defect in our comprehension of general relativity as a physical theory. I conclude by comparing general relativity with quantum mechanics, a theory that manifestly does stand in need of an interpretation in an important sense. Although many aspects of the conceptual structure of general relativity remain poorly understood, it suffers no incoherence in its formulation as a physical theory that only an ‘interpretation’ could resolve.

This article analyzes the epistemic value of understanding and offers an account of the role of understanding in science. First, I discuss the objectivist view of the relation between explanation and understanding, defended by Carl Hempel and J. D. Trout. I challenge this view by arguing that pragmatic aspects of explanation are crucial for achieving the epistemic aims of science. Subsequently, I present an analysis of these pragmatic aspects in terms of ‘intelligibility’ and a contextual account of scientific understanding based on this notion.

This article explores the relation between the concept of symmetry and its formalisms. The standard view among philosophers and physicists is that symmetry is completely formalized by mathematical groups. For some mathematicians however, the groupoid is a competing and more general formalism. An analysis of symmetry that justifies this extension has not been adequately spelled out. After a brief explication of how groups, equivalence, and symmetries classes are related, we show that, while it's true in some instances that groups are too restrictive, there are other instances for which the standard extension to groupoids is too unrestrictive. The connection between groups and equivalence classes, when generalized to groupoids, suggests a middle ground between the two.

A hitherto neglected form of explanation is explored, especially its role in population genetics. “Statistically abstractive explanation” (SA explanation) mandates the suppression of factors probabilistically relevant to an explanandum when these factors are extraneous to the theoretical project being pursued. When these factors are suppressed, the explanandum is rendered uncertain. But this uncertainty traces to the theoretically constrained character of SA explanation, not to any real indeterminacy. Random genetic drift is an artifact of such uncertainty, and it is therefore wrong to reify it as a cause of evolution or as a process in its own right.

According to standard (quantum) statistical mechanics, the phenomenon of a phase transition, as described in classical thermodynamics, cannot be derived unless one assumes that the system under study is infinite. This is naturally puzzling since real systems are composed of a finite number of particles; consequently, a well-known reaction to this problem was to urge that the thermodynamic definition of phase transitions (in terms of singularities) should not be “taken seriously.” This article takes singularities seriously and analyzes their role by using the well-known distinction between data and phenomena, in an attempt to better understand the origin of the puzzle.

The study of evolutionary developmental biology (“evo-devo”) has recently experienced a dramatic surge in popularity among researchers and theorists concerned with evolution. However, some biologists and philosophers remain skeptical of the claims of evo-devo. This paper discusses and responds to the recent high profile criticisms of evo-devo presented by biologists Hopi E. Hoekstra and Jerry A. Coyne. I argue that their objections are unconvincing. Indeed, empirical research supports the main tenets of evo-devo, including the claim that morphological evolution is the result of cis-regulatory change and the distinction that evo-devo draws between morphological and physiological traits.

We maximally extend the quantum-mechanical results of Muller and Saunders (2008) establishing the ‘weak discernibility’ of an arbitrary number of similar fermions in finite-dimensional Hilbert spaces. This confutes the currently dominant view that (A) the quantum-mechanical description of similar particles conflicts with Leibniz's Principle of the Identity of Indiscernibles (PII); and that (B) the only way to save PII is by adopting some heavy metaphysical notion such as Scotusian haecceitas or Adamsian primitive thisness. We take sides with Muller and Saunders (2008) against this currently dominant view, which has been expounded and defended by many.

Philosophers of science readily acknowledge that nonepistemic values influence the discovery and pursuit of scientific theories, but many tend to regard these influences as epistemically uninteresting. The present paper challenges this position by identifying three avenues through which nonepistemic values associated with discovery and pursuit in contemporary pollution research influence theory appraisal: (1) by guiding the choice of questions and research projects, (2) by altering experimental design, and (3) by affecting the creation and further investigation of theories or hypotheses. This analysis indicates that the effects of these values are sufficiently complex and epistemically significant to merit further attention.

Gott (1993) has used the ‘Copernican principle’ to derive a probability distribution for the total longevity of any phenomenon, based solely on the phenomenon's past longevity. Leslie (1996) and others have used an apparently similar probabilistic argument, the ‘Doomsday Argument’, to claim that conventional predictions of longevity must be adjusted, based on Bayes's Theorem, in favor of shorter longevities. Here I show that Gott's arguments are flawed and contradictory, but that one of his conclusions is plausible and mathematically equivalent to Laplace's famous—and notorious—‘rule of succession’. On the other hand, the Doomsday Argument, though it appears consistent with some common-sense grains of truth, is fallacious; the argument's key error is to conflate future longevity and total longevity. Applying the work of Hill (1968) and Coolen (1998, 2006) in the field of nonparametric predictive inference, I propose an alternative argument for quantifying how past longevity of a phenomenon does provide evidence for future longevity. In so doing, I identify an objective standard by which to choose among counting time intervals, counting population, or counting any other measure of past longevity in predicting future longevity.