Time of seedling emergence is an important step in the life cycle of annual plants because it may determine subsequent performance and success. Timing of emergence is especially critical to plant performance in habitats like arable fields which are subject to frequent disturbances. Within-season variation in timing of germination in the range of only a few days is typical for many arable weeds. However, since it is unclear whether such small deviations in germination date translate into fitness differences in the course of the life cycle, the aim of this paper was to quantify the effects of short germination delays on plant performance. We conducted two generalized randomized block experiments in an unheated greenhouse to study the impact of delayed germination (1, 2, 3 and 7 d) with and without competition, respectively, on the fitness of the arable weed species Agrostemma githago (L.). We expected that delayed germination significantly reduces fitness in terms of several life-history traits, and that the decrease of fitness is higher in the presence of competition. Under realistic conditions with competition through barley, Agrostemma plants with delayed germination of 7 d produced 54% fewer shoots, 57% less biomass, 52% fewer flowers, 36% lighter seeds and were 23% shorter as compared to control plants without delayed germination. Without additional stress through competition with barley this pattern was less pronounced. Thus, in the situation of interspecific competition, early emerging seedlings have biologically significant fitness advantages over later emerging seedlings of the same species.

Water availability regulates timing of germination, especially in those environments where it is a limiting factor. However, the water requirements for germination of most wild Mediterranean species are unknown. In this work we analysed the germination response to water stress of eight Cistaceae species with hard-coated seeds, which are typical for the Mediterranean shrublands. Seeds were exposed to a heat shock in order to overcome physical dormancy and then incubated under five water potentials (0, −0.2, −0.4, −0.6 and −0.8 MPa). Ungerminated seeds following these treatments were transferred to water in order to evaluate the recovery of germination. Additionally, at the end of the experiment, viability of still ungerminated seeds was examined. We analysed final germination percentage, time to reach 50% of the final germination (t 50), recovery of germination and seed viability in relation to water stress treatments. Furthermore, hydrotime analysis was performed; sensitivity to water stress, as characterized by Ψb(50), was checked in relation to seed size of species. Overall, water stress delayed and decreased germination but species showed different germination sensitivities, which were not related to seed size. Recovery of germination was high after disappearance of water stress but seed viability decreased in some species. Consequently, post-fire germination of Cistaceae must be strongly regulated by water availability and their seeds can recover germination capacity when sufficient water is available after long periods of incomplete hydration. However, some seeds die during the wait.

Seeds of some eastern Australian Grevillea species show the characteristics of non-deep physiological dormancy, which is broken by exposure to heat shock and/or smoke. The current study tested whether the restrictive effect of the seed coat on germination was localized to specific regions, whether the fire cues affected the growth potential of the embryo, the mechanical strength of the seed coat itself, and the anatomy of fracturing of the seed coat. Removal of the micropylar seed coat allowed germination, while retaining it in place restricted germination. The growth potential of the embryo was increased by exposure to heat shock or to smoke, and increased the most if exposed to both cues. Estimation of the minimum force required by embryos to germinate from intact seeds suggested that this force was reduced for seeds treated with fire cues. The fire cues did not affect the resistance of the seed coat to compressive force when tested after 24 h of imbibition. Fracturing of the seed coat occurred between cell walls, except for the palisade layer, where fracturing occurred across palisade and sclerenchyma cells. While the micropylar end of the seed coat imposes dormancy, most likely by mechanical constraint, heat shock and smoke overcome dormancy by increasing the embryo's growth potential and possibly weakening the seed coat, either directly or via the embryo.

Seed dormancy is the temporary inability of an imbibed seed to germinate under otherwise favourable conditions. It is an important trait for seed persistence in many higher plants. Dormant dehulled red rice caryopses can have a strong dormancy: the studied population shows an almost complete dormancy; that is, these caryopses do not germinate (usually germination is <1–2%) when incubated in water for the time usually adopted for germination tests (i.e. 2 weeks). However, after several months of incubation in water, dormant red rice caryopses start germinating in an anomalous manner. Most notably, the piercing of the caryopsis coat is very slow, sometimes arrested, until the coat completely breaks down and embryo growth is resumed. There is, therefore, a time lag between the initial rupture of the caryopsis coat and the start of seedling growth. It is argued that embryo growth can be triggered by the failure of the caryopsis coat even if seed dormancy has not been previously relieved, and thus germination is started and dormancy is forcefully interrupted. Accordingly, the time course of the anomalous germination shows a Gompertz distribution of times to failure. It is concluded that: (1) if the seed rests with the coat ruptured without further growth, it is still dormant; if so, therefore, (2) the breaking of the coat is not necessarily a marker of germination in this context.

Fruits of Melastomataceae constitute a key resource for Neotropical frugivores. However, the mechanisms determining gut-passage effects on seed germination are poorly known. Here, we determine how bird gut-passage affects seed germination in three species of Miconieae by running germination experiments, examining changes in seed coat structure and determining germination inhibition by fruit extracts. Mature fruits of Clidemia urceolata, Leandra aurea and Miconia rubiginosa were sampled in south-eastern Brazil and seeds were submitted to treatments evaluating gut-passage effects and different concentrations of fruit extracts. Light and scanning electron microscopy were used to compare seed coat structure and thickness of control and gut-passed seeds. We found minor effects of gut passage on seed germination. However, changes in seed coat structure of gut-passed seeds of L. aurea may have been related to a decrease in germination. Our data also support the idea that germination inhibitors in fruit pulp may contribute to the inhibition effect. Our study corroborates the idea that changes in the seed coat following gut passage modulate the complex fruit–frugivore interactions, especially between plants and generalist dispersers, and that seed cleaning is a key factor determining seedling establishment in Neotropical Melastomataceae.

Does seed dormancy allow disturbance-oriented forest herbs such as Ageratina altissima to persist in heterogeneous natural communities? To document seed longevity and dormancy state, Ageratina seeds were buried in nylon mesh bags in second-growth forest stands in south-eastern Ohio, USA. Bags were recovered at 2-month intervals, and seeds were tested for viability and germinability in the lab. Live seed numbers declined rapidly, with seed banks exhausted in an estimated 33–37 months. Seeds showed a strong dormancy polymorphism, with 71–84% of live seeds germinable between March and July, the season of natural seedling emergence. At other dates, most seeds appeared to be in a state of induced dormancy, allowing little (0–21%) germination. The slope aspect of the burial site, an important factor controlling above-ground vegetation, had no effect on seed longevity or dormancy condition. Dormancy in Ageratina appears to be adapted to allow opportunistic germination in late spring–early summer, but to prevent germination in less benign periods. Seed longevity is shorter than the natural frequency of gaps in mesophytic forest. We conclude that a long-term dispersal/dormancy trade-off is probably an oversimplification of the spatial ecology of this species. The primary function of dormancy appears to be short-term tracking of seasonal variation.

A climate warming of 2–5°C by the end of the century will impact the likelihood of seed germination of sugar maple (Acer saccharum), a dominant tree species which possesses a restricted temperature range to ensure successful reproduction. We hypothesize that seed origin affects germination due to the species' local adaptation to temperature. We tested this by experimentally investigating the effect of incubation temperature and temperature shifting on sugar maple seed germination from seven different seed sources representing the current species range. Survival analysis showed that seeds from the northern range had the highest germination percentage, while the southern range had the lowest. The mean germination percentage under constant temperatures was best when temperatures were ≤5°C, whereas germination percentages plummeted at temperatures ≥11°C (5.8%). Cool shifting increased germination by 19.1% over constant temperature treatments and by 29.3% over warm shifting treatments. Both shifting treatments caused earlier germination relative to the constant temperature treatments. A climate warming of up to +5°C is shown to severely reduce germination of seeds from the southern range. However, under a more pronounced warming of 7°C, seed germination at the northern range become more affected and now comparable to those found from the southern range. This study states that the high seed germination percentage found in sugar maple at the northern range makes it fairly resilient to the warmest projected temperature increase for the next century. These findings provide forest managers with the necessary information to make accurate projections when considering strategies for future regeneration while also considering climate warming.

Little information is available on seed dormancy of members of the Zingiberales and especially the Zingiberaceae. Our aim was to investigate the dormancy breaking and germination requirements of Alpinia galanga in vitro with a minimum number of seeds, using the move-along experiment. The mass of imbibed seeds increased by 17.5% in 1 d, showing that seeds were water permeable. The best germination in the move-along experiment (86.7%) was obtained when seeds were exposed to the sequence of temperature regimes that began with winter (20/10°C), and seeds began to germinate after 6 weeks at this temperature regime. Seeds dry stored for 4 months and then incubated at the sequence of temperature regimes that began with summer (30/20°C) started germinating in the sixth week at this temperature regime and had germinated to 93.3% after 18 weeks. Seeds kept dry for 4 months and then treated with 50 mg l−1 gibberellic acid (GA3) began to germinate at 30/20°C after 2 weeks. Control seeds incubated continuously at 20/10, 25/15 or 30/20°C germinated to 80.6, 77.8 and 60.0%, respectively. When incubated at 15, 20, 25 or 30°C, the ideal temperature for embryo growth was 20°C. Since GA3 and dry storage can break non-deep physiological dormancy and embryos grew during warm stratification, seeds of A. galanga have non-deep simple morphophysiological dormancy (MPD). This is the first report of non-deep simple MPD in the Zingiberaceae.

To increase our knowledge of the diversity of seed dormancy and germination in Rubiaceae, we investigated seed desiccation sensitivity and germination of three Psychotria species. Seeds of P. gardneri, P. nigra and P. zeylanica germinated to high percentages at <15% seed moisture content. Intact seeds of P. zeylanica and P. nigra imbibed water and thus do not have physical dormancy. More than 50% of the seeds of P. zeylanica, P. nigra and P. gardneri took 33, 53 and 110 d, respectively, at 25°C for the radicle to emerge, and embryo growth occurred before and after radicle emergence. Thus, seeds have morphophysiological dormancy. Shoot emergence of P. nigra and P. zeylanica seeds was delayed 50 and 80 d after radical emergence, respectively; thus, seeds have epicotyl morphophysiological dormancy (eMPD). This is the first report of eMPD in Rubiaceae. Since warm stratification promoted both radicle and shoot emergence in seeds of P. zeylanica and P. nigra, the level of eMPD is non-deep simple. Hence, dormancy of the studied Psychotria spp. can be described as C1bBb (radicle)–C1bBb (epicotyl), i.e. the embryo is underdeveloped and grows prior to radicle emergence and epicotyl emergence under warm temperatures (Bb), and both the radicle and epicotyl have non-deep simple physiological dormancy broken by warm temperatures (C1b). In two Psychotria species studied in detail, radicle emergence occurs at the beginning of the rainy season and plumule emergence at the peak rainy season when conditions are most favourable for rapid seedling development.

Group-testing regression methods are effective for estimating and classifying binary responses and can substantially reduce the number of required diagnostic tests. However, there is no appropriate methodology when the sampling process is complex and informative. In these cases, researchers often ignore stratification and weights that can severely bias the estimates of the population parameters. In this paper, we develop group-testing regression models for analysing two-stage surveys with unequal selection probabilities and informative sampling. Weights are incorporated into the likelihood function using the pseudo-likelihood approach. A simulation study demonstrates that the proposed model reduces the bias in estimation considerably compared to other methods that ignore the weights. Finally, we apply the model for estimating the presence of transgenic corn in Mexico and we give the SAS code used for the analysis.