Herbal medicine is used worldwide either as a sole treatment method or as part of a comprehensive treatment plan alongside orthodox methods of diagnosis and treatment. A survey reported that, in the USA, nearly one-sixth of women took at least one herbal product in 2000. Despite their widespread use, numerous reports show that the herbal products available to consumers are of variable quality. This disparity in quality of herbal preparations can be attributed to the fact that their production is complicated. To produce high-quality herbal products, attention must be paid to, among others, phytochemical variations due to plant breed, organ specificity, stages of growth, cultivation parameters, contamination by microbial and chemical agents, substitution, adulteration with synthetic drugs, heavy metal contamination, storage and extraction. This review focuses on organ specificity, seasonal variations, the effect of drying and storage, and the extraction of phytochemical constituents. Special emphasis is placed on the four most frequently used herbal products in the USA: echinacea, Ginkgo biloba, ginseng and St John's Wort.

Bryophytes (including mosses, liverworts and hornworts) are a heterogeneous group of terrestrial plants, which comprise over 24,000 species worldwide. Given the various biological activities reported from bryophytes, they have a huge commercial potential. Due to their minute size and rather small biomass in various ecosystems, bryophytes are a seldom part of ethnomedicine and rarely subject to medicinal and chemical analyses. Still, hundreds of novel natural products have been isolated from bryophytes. Bryophytes have been shown to contain numerous potentially useful natural products, including polysaccharides, lipids, rare amino acids, terpenoids, phenylpropanoids, quinones and many other specialized metabolites. Additionally, different bryophyte extracts and isolated compounds have shown antimicrobial, antiviral, cytotoxic, nematocidal, insecticidal, effects on smooth and non-striated muscles, weight loss, plant growth regulators and allelopathic activities. Bryophytes also cause allergies and contact dermatitis. All these effects highlight bryophytes as potential source for herbal remedies and production of chemicals to be used in various products.

Chickpea is the third most important grain legume grown in the arid and semi-arid regions of the world. In spite of vast germplasm accessions available in different genebanks, there has been very limited use of these accessions in genetic enhancement of chickpea. However, in recent years, specialized germplasm subsets such as global composite collection, core collection, mini core collection and reference set have been developed. In parallel, significant genomic resources such as molecular markers including simple sequence repeats (SSRs), single nucleotide polymorphisms (SNPs), diversity arrays technology (DArT) and transcript sequences, e.g. expressed sequence tags, short transcript reads, have been developed. By using SSR, SNP and DArT markers, integrated genetic maps have been developed. It is anticipated that the use of genomic resources and specialized germplasm subsets such as mini core collection and reference set will facilitate identification of trait-specific germplasm, trait mapping and allele mining for resistance to biotic and abiotic stresses and for agronomic traits. Advent of the next generation sequencing technologies coupled with advances in bioinformatics offers the possibility of undertaking large-scale sequencing of germplasm accessions so that modern breeding approaches such as genomic selection and breeding by design can be realized in near future for chickpea improvement.

The effectiveness of association mapping (AM) based on linkage disequilibrium (LD) is currently being tested in a number of crops. An important prerequisite for the application of AM is the availability of collections of accessions with a suitable level of genetic variation for target traits and with limited spurious LD due to the presence of population structure. Herein, the results of a genome-wide molecular characterization of a collection of elite durum wheat accessions well-adapted to Mediterranean environments are presented. Ninety-seven highly polymorphic simple sequence repeats and 166 amplified fragment length polymorphism markers were used to characterize 189 durum accessions, mainly cultivars and advanced breeding lines. Genome-wide significant and sizeable LD indices at a centimorgan scale were observed, while LD mainly decayed within 10 cM. On the other hand, effects due to spurious LD were notably lower than those previously observed in a durum wheat collection sampling durum gene pools of more diverse origin. These results, coupled with the high level of genetic variability detected for a number of important morpho-physiological traits and their high heritability, indicate the suitability of this collection for AM studies targeting agronomically important traits.

Although oilseed rape has become one of the most important oil crops in Europe, little is known regarding the viability of its seed under conditions of long-term storage. We report here an examination of oilseed rape seed longevity performed on a set of 42 accessions housed at the German ex situ genebank at IPK, Gatersleben. A comparison of germination between the accessions stored for 26 years showed that viability was in part genetically determined, since it ranged between 42 and 98%. An attempt was made to define the genetic basis of viability by subjecting a mapping population of doubled haploids to three artificial ageing treatments. Quantitative trait loci (QTL) were detected on six chromosomes: N6, N7, N8, N15, N16 and N18. The chromosomal locations of these QTL were compared with their syntenic regions in Arabidopsis thaliana in order to explore what genes might underlie genetic variation for longevity.

We present here the first large-scale genetic characterization of grape cultivars from Transcaucasia and Anatolia. These regions where wild grapes still grow in nature have been cultivating wine and table grapes for thousands of years and are considered the cradles of viticulture. Using 12 nuclear microsatellite markers, we genotyped 116 accessions of traditional grape cultivars from Armenia, Georgia and Turkey and we detected 17 identical genotypes and six homonymy cases, mainly within each national germplasm. Neighbour-joining analysis of genetic distance showed that each germplasm could have multiple origins and although they are now separated, they might have some common ancestors. In addition, four varieties from Western Europe included as outgroups turned out to be more related to Georgian cultivars than other germplasms, suggesting a possible ancient origin in Georgia. This work represents a first step towards germplasm management of this rich ampelographic heritage.

Plantago ovata is the cultivated and economically important species in the monotypic genus Plantago. P. ovata is a short-stemmed annual herb, 10–45 cm tall. The species is generally an in-breeder. The seed husk of this plant is commonly called Psyllium or Isabgol (in Hindi), which is a very effective laxative. Other usages of Isabgol are in ice cream making, cosmetics, printing and finishing. The intake of husk also reduces blood cholesterol levels. Isabgol is commercially very important as its export earns India foreign exchange worth INR 2.5 billion (US$1=44 INR). The plant is cultivated on a large scale in western India. In Gujarat, it is cultivated in about 144,000 ha of land, yielding 720 kg/ha. P. ovata has a narrow genetic base, and the lack of variability is on account of low chromosome number, small chromosome size, presence of high heterochromatin in the chromosomes, low chiasmata frequency and low recombination index. The genome size of the species is ∼500 Mb. Different breeding methods, namely selection, hybridization, induced mutations, polyploidy and tissue culture, have been used for genetic improvement of this plant. Except selections, which have led to isolation of a few varieties, the results of other methods have not been encouraging. P. ovata has about 200 wild allies, some of which are medicinally important. These wild species constitute a rich resource of important genes, which if transferred to cultivated species could revolutionize the production of Isabgol. The present paper highlights various aspects of genetic diversity, cultivation and utilization of this important medicinal plant, and suggests the prospects of genetic manipulation.

In this paper, we discuss stress-adapted wild Vigna plants and several important Vigna crops. Seeds, young shoots and/or tubers of many wild Vigna species are edible and are eaten by people in some locations where they grow. We propose the concept of ‘neo-domestication’ of stress-adapted wild edible Vigna species. As the causative change of the mutation resulting in a domestication gene is usually ‘loss-of-function’ type, ‘neo-domestication’ could be achieved by conventional mutation breeding together with screening by TILLING. The ‘neo-crops’ could play an important role in areas unsuitable for growing other crops to increase world food production. We also propose that wild Vigna species can be ‘new model plant species’ for the genetic study of natural adaptation to stresses (e.g. salt, acid, alkali, drought, flood, pests and diseases). To facilitate this, the Vigna Genome Project has been initiated. In addition, sustainable cropping systems may be enhanced by analysis of the nitrogen-fixing systems of stress-adapted Vigna species. Stress-adapted symbiotic bacteria produce nodules on stress-adapted Vigna species. Therefore, analyses of the genetic diversity of symbiotic bacteria and the process of symbiosis under stress environments should be conducted.

Cowpea is a drought-tolerant food legume grown in the savannah regions of the tropics and subtropics. The International Institute for Tropical Agriculture (IITA) holds the world collection of 15,003 cultivated cowpea from 89 countries in its genebank. In excess of 12,000 accessions were characterized for 28 agrobotanical descriptors. The entire collection was first stratified by country of origin and biological status. Land race accessions (10,227) with information on origin and characterization data were grouped using clustering procedures. The clustering analysis was based on Euclidean distances between and among accessions. Accessions within each country were then grouped hierarchically, according to their similarity. The number of clusters selected for countries varied from 2 to 20, depending on the size of collection for that country. A percentage number of accessions (5–25%) was chosen from each country, based on the size of the collection and its proximity to the centre of diversity. The number of accessions from each cluster in a country was then chosen randomly, based on the predetermined percentage. In countries where the numbers of accessions were few ( < 10), the percentage chosen from those countries would be higher and may go up to 100% to ensure that at least one accession was chosen from every country. Accessions with no characterization information were treated as a group, and accessions were chosen randomly, based on their geographical distribution. In the process of selection, 200 accessions that are known to be resistant to pests and diseases and not originally chosen through the selection processes were, nevertheless, kept as part of the core collection. Following these procedures, a total of 1701 accessions of landraces were chosen from the entire collection. Using the same procedures, a subset of 225 accessions was chosen from 1422 advanced cultivars and breeding or research lines. A third subset of 130 accessions was chosen from 838 accessions that either lack information on origin or biological status, and six accessions of wild and weedy forms from the available 64 wild and weed accessions were added. Thus a core collection of 2062 accessions of cowpea was constituted. The diversity in the core collection was similar to that of the entire collection and correlated traits that may be linked were also preserved in the core collection. This core collection of cowpea provides an opportunity for further exploitation of the cowpea germplasm for improvement of this crop.

Flavonoid content was quantified by high performance liquid chromatography (HPLC) and seed-coat colour was recorded from different legume seeds. Soybean seeds generally contained significantly higher amounts of daidzein (315–354 μg/g), genistein (438–458 μg/g), kaempferol (38–68 μg/g) and total measured flavonoids (892–917 μg/g), while cowpea and peanut seeds contained a significantly higher amount of quercetin (214–280 μg/g and 133–289 μg/g, respectively) than the other legumes tested. Significant variation for flavonoid content existed among and within legume species. Daidzein was significantly correlated with genistein and kaempferol (r = 0.92, P < 0.0001; r = 0.68, P < 0.0001), respectively. Genistein was also significantly correlated with kaempferol (r = 0.84, P < 0.0001). Due to differences in genetic background, no consistent relationship was observed between seed-coat colour and flavonoid content. Variation observed in flavonoid content and seed-coat colour would be useful for legume breeding programmes and consumer use.

Brassica species have an economic and medicinal importance. Estimation of the amount and distribution of genetic diversity within Brassica species is essential for establishing efficient management, conservation and breeding practices. This review discusses the taxonomy, gene pool, and Brassica-derived phytochemicals and their nutraceutical importance. It also surveys the recently advanced studies of the genetic diversity and phylogenetic studies of Brassica species at the level of morphological, cytological, biochemical and molecular markers that have proven to be useful for evaluating the genetic variation, taxonomic relationships and species identity, and could be useful for improving Brassica crops through future promising breeding programmes.

Chickpea is one of the most important grain legume crops in the world. Large collections of genetic resources are maintained in the International Crops Research Institute for the Semi-Arid Tropics (ICRISAT) and International Center for Agricultural Research in the Dry Areas (ICARDA) genebanks. Association mapping using neutral markers has been suggested as a means to identify useful alleles in the vast reservoirs of genetic diversity existing in the germplasm collections that could be associated with the phenotypes among the population individuals. ICRISAT in collaboration with ICARDA developed a global composite collection of 3000 accessions that will be profiled using 50 polymorphic simple sequence repeat (SSR) markers. The data generated through this collaborative effort will be used to define the genetic structure of the global composite collection and to select a reference sample of 300 accessions representing the maximum diversity for the isolation of allelic variants of candidate gene associated with beneficial traits. It is then expected that molecular biologists and plant breeders will have opportunities to use diverse lines in functional and comparative genomics, in mapping and cloning gene(s), and in applied plant breeding to diversify the genetic base of the breeding populations which should lead to the development of broad-based elite breeding lines/cultivars with superior yield and enhanced adaptation to diverse environments.

Selective use of crude plant extracts has been the oldest ritual in ancient Indian Medicinal System ‘Ayurveda’, as well as in Traditional Chinese Medicine system for thousands of years. This has been well documented that herbal medicines of Chinese, Indian, Korean and Native American people had included bryophytes, lichens, lycophytes and ferns. Since antiquity, most of the ferns and fern allies have given many health benefits to ancient civilizations who had used them for food, tea and drugs. Modern approaches have combined multidisciplinary technologies and have specific chemical compounds extracted and identified for producing very particulate medicines from plant parts. Plants, which yield appreciable quality and quantity of polysaccharides, steroids, terpenoids, flavonoids, alkaloids and antibiotics are suitable for dragging out drugs for many ailments/diseases, including cancer treatments. Modern explorations on the functional activities of pteridophytes for human health by discovering specific compounds and their usage in medicines have widened the scope of pteridophytes by shaping these plants as a great boon for pharmaceutical companies and related industries. Even ‘fern weeds’, which invade our freshwater bodies and reduce the freshwater wealth of a lake, e.g. Azolla, Salvinia, Marsilea, Ceratopteris, etc. can be utilized to produce life saving drugs because they are reservoirs of very many organic compounds that are useful as medicines. Some of the fern genera have a few unique secondary metabolites, which have not been discovered in higher plants. Polyphenols are useful phytochemicals, which provide health benefits such as antioxidants. From experiments on screening of total polyphenol contents of 37 ferns and fern allies, Polystichum lepidocaulon and Polystichum polyblepharum were reported to have more than 13% of total polyphenols from dried materials of both fronds and rhizomes. In addition, fronds of Davallia mariesii and rhizomes of Cyrtomium fortune, Dicranopteris pedata, Athyrium niponicum and Dryopteris nipponensis showed more than 10% of total polyphenols from dried materials. High bioactivities of traditional medicinal ferns have been studied internationally to underscore their roles in medicine. These attempts have confirmed various bioactivities, such as antioxidant, antimicrobial, antiviral, anti-inflammatory, antitumor and anti-HIV, etc. The occurrence of antibiotic activity in the extracts of more than 200 species of pteridophytes has been shown to be of prime significance within the period of 1975–2015. The active substances in many cases were found to be antibacterial to penicillin-resistant Staphylococcus aureus, Mycobacterium phlei, Salmonella typhi, Vibrio cholera, and Pseudomonas aeruginosa. Dryopteris cochleata was active against both bacteria and fungi. Five other species of Dryopteris showed remarkable antibacterial activity. The ferns of ‘Adiantum group’ have been found to be particularly active against Gram-positive bacteria. The polypodiaceous ferns constitute a rich group of which Microsorum alternifolium, Leptochillus decurrens, Polypodium irioides, Pyrrosia mannii and Phymatodes ebenipes deserve special mention. Several thelypteroid, davallioid and athyrioid ferns, in addition to antibiotic activity have also been found to show most useful bioactivity for our life – the antioxidant activity. The latter superb biochemical quality of ferns alone makes most ferns of great advantage to human health. Lycophytes particularly Lycopodium clavatum and Equisetum hyemale and ferns (Dryopteris and Adiantums) have had constituted the backbone of Homeopathic medicines and now many more genera have been added to the network of modern medicinal approaches in the drug industry. These pteridophytes are indispensably integral parts of forests world over. A few of the aquatic ferns (Azolla, Salvinia) serve as excellent bio-fertilizers and bioremediation agents. Medicinal plants are under cultivation and cultured world over. Botanically, say a thousand years ago, these were wild and many of them were weeds. As pteridophytes have survived since Paleozoic, they have undergone series of disruptive adaptive changes of environment than any other vascular plants. These plants most likely, could withstand the tests of geological time on account of their being guarded with genetic capability of possessing many useful oils, phytochemicals (secondary metabolites) such as flavonoids, steroids, alkaloids, phenols, triterpenoid compounds, varieties of amino acids and fatty acids, which in turn offer inherent tolerance and defense system . Additionally, from evolutionary point of view majority of ferns have constituted carpet flora and have worked as ‘cradles’ in natural forests so as to nurture small animals particularly reptiles and mammals. Ferns are denominators of prevalent rich biodiversity in almost every part of the earth. Comparison of evolutionary adaptations and natural innovations illuminate the genetic basis for the development of organisms. It is emphasized that there should be good field stations just in the peripheral region of reserved forests with large green houses to function as ‘Fernariums/ Mossariums/ and/or Lichenariums’ to conserve and maintain rare, endangered and medicinally superlative species found in those areas/forests. Gene networks (DNA stretches) that retain similar wiring diagrams (some or many similar DNA sequences) among related, distantly related or even totally diverse organisms point to the ways in which regulatory regions of the genome have evolved. Indisputably, comparative genomics can help us in deciphering evolvability of gene network and conservation modes during vast geological journey in evolution. We need exhaustive genomics and multidimensional molecular genetic studies on pteridophytes so as to discover unique DNA sequences, which could turn the gates of modern medicine.

Lens culinaris Medik. ssp. culinaris is the only cultivated species in the genus Lens. Intensive selection pressure to develop new cultivars, a narrow genetic base, co-evolution of pathogens to partially resistant cultivars and other factors have accelerated susceptibility to different fungal diseases in this species. Few sources for resistance to stemphylium blight (SB) caused by Stemphylium botryosum Wallr. exist among commercial lentil cultivars. A total of 70 accessions were selected from seven species of the genus Lens to screen for SB resistance. The L. culinaris accessions were screened in four different environments, and the accessions of Lens ervoides, L. culinaris ssp. orientalis, Lens tomentosus,Lens nigricans, Lens odemensis and Lens lamottei in growth chamber or greenhouse experiments to identify resistance sources for potential use in lentil breeding. A highly aggressive isolate of SB was used as an inoculum to screen them under controlled conditions. Lentil cultivars ‘Eston’ (resistant) and ‘CDC Glamis’ (susceptible) were used as checks with consistent results in all experiments. Most of the L. culinaris accessions were susceptible to SB, whereas more than 70% of the wild lentil accessions had disease severity scores equal to or significantly lower than that of the SB-resistant check ‘Eston’. Some wild species accessions previously identified with resistance to anthracnose (Colletotrichum truncatum) and ascochyta blight (Ascochyta lentis) were also highly resistant to SB. The highest frequency of resistance to SB was found in L. lamottei followed by L. ervoides of the secondary gene pool. These sources can potentially be used to develop new commercial cultivars with multiple or single disease resistance.

Molecular characterization of ex situ plant germplasm, although more attainable than before, has rarely been applied to a whole germplasm collection of 2000 accessions or larger. The benefits of screening large numbers of accessions have not been well recognized for germplasm management and utilization. Challenges also exist in identifying duplicated and genetically related accessions and in validating developed core subsets. Here we show how a new approach using an average marker-based dissimilarity of an accession in a collection can be applied to identify both redundancy and distinctness in a plant germplasm collection. Application of this dissimilarity measure to 2727 flax accessions genotyped by 149 randomly amplified polymorphic DNA (RAPD) markers revealed that up to 22% of accessions could be deemed to be redundant. Up to 500 of the most distinct flax accessions were identified and these can be directly screened for traits of interest to broaden the genetic base in a flax improvement programme. These results demonstrate that molecular screening of a large number of accessions with an informative diversity analysis can facilitate the management and utilization of ex situ plant germplasm.

The potential for the phylogeographical analysis of cereal landraces to determine the initial patterns of agricultural spread through Europe is discussed in relation to two of the first cereals to be domesticated, emmer wheat (Triticum turgidum subsp. dicoccum) and barley (Hordeum vulgare). Extant landraces available from germplasm collections have a patchy distribution, largely being confined to regions of rugged upland topography, and the phylogeographical patterns observed may be due to ‘overstamping’ by more recent crop movements. Phylogeographical studies of non-viable historical landrace material held in herbarium and old seed collections and found in historical buildings have the potential to fill in the gaps in time and space. We explore the importance of precise geographical provenance and the limitations of this in extant and historical material. Additionally, we consider the effect of various chemicals and the preservation of DNA in the historical material.

Pearl millet (Pennisetum glaucum (L.) R. Br.) is an important staple cereal cultivated in the arid and semi-arid tropics of Asia and Africa, regions severely affected by malnutrition. Knowledge about the extent of genetic variability and patterns of agro-morphological variation in local germplasm from a target region is an important prerequisite for efficient crop improvement. To assess the potential of Sudanese pearl millet landraces as sources of desirable traits for pearl millet improvement including biofortification, a total of 225 accessions were evaluated in Sudan at three locations for agro-morphological traits and at one location for grain mineral nutrient contents (Fe, Zn, Ca, P, K, Mg, Mn, S, Na, Cu and β-carotene). Genetic variation was highly significant, but relatively limited for some agro-morphological traits (62–78 d to flowering, 119–188 cm plant height and 16–34 cm panicle length), pointing to the potential usefulness of a targeted diversification for these traits. Self-pollinated grain micronutrient contents showed a wide variation: 19.7–86.4 mg/kg for Fe and 13.5–82.4 mg/kg for Zn. Significant and positive correlations among most of the nutritional traits were observed; therefore, enhancement of the concentrations of some nutrients will lead to the improvement of other related nutrients. No significant associations were observed between the nutritional and agro-morphological traits, indicating good prospects for simultaneous improvement of both trait categories. No clear patterns of geographic differentiation for specific traits were detected for the Sudanese pearl millet. Nutrient-rich accessions were identified and those with acceptable agro-morphological traits are encouraging materials for future pearl millet biofortification programmes in Sudan.

Advances in sequencing technologies have made it possible to analyse large amounts of germplasm against low production costs, which has opened the door to screen genebank collections more efficiently for DNA sequence variation. The present study explores how these developments may affect the operations of genebanks and, consequently, how genebank agendas may change. It is argued that the new developments are more likely to have an impact on the user-oriented activities than the housekeeping operations of genebanks. To better facilitate the user community, genebanks may have to strengthen their core business, in particular, by improving quality management procedures and by providing access to a wider diversity of a crop's gene pool. In addition, genebanks may have to provide novel services, such as the introduction of specific user-oriented collection types, including research populations and genetically purified lines, and the development of novel information services, including plant genetic resources portals that should guide users to the information and materials of specific interest. To improve their user-oriented services, genebanks need to increase their communication and collaboration with the user community and to develop strategic alliances with this sector.

Cryopreservation using an aluminium cryo-plate was successfully applied to in vitro-grown strawberry (Fragaria × ananassa Duch.) shoot tips. The shoots were cold-hardened at 5°C for 3 weeks with an 8-h photoperiod. The shoot tips (1.5–2.0 mm × 0.5–1.0 mm) were dissected from the shoot and pre-cultured at 5°C for 2 d on Murashige and Skoog medium containing 2 M glycerol and 0.3 M sucrose. The pre-cultured shoot tips were placed on the aluminium cryo-plate containing ten wells embedded in alginate gel. Osmoprotection was performed by immersing the cryo-plates in a loading solution (2 M glycerol and 0.8 M sucrose) for 30 min at 25°C. Dehydration was performed by immersing the cryo-plates in plant vitrification solution 2 for 50 min at 25°C. Then, the cryo-plate with shoot tips was transferred into an uncapped cryotube that was held on a cryo-cane and directly immersed into liquid nitrogen (LN). After storage in LN, shoot tips attached to the cryo-plate were directly immersed into 2 ml of a 1 M sucrose solution for regeneration. Using this procedure, the average regrowth level of vitrified shoot tips of 15 strawberry cultivars reached 81%. This new method has many advantages and will facilitate the cryostorage of strawberry germplasm.

Drought is one of the major factors limiting wheat yield in many developing countries worldwide. Parameters of chlorophyll a fluorescence kinetics under drought stress conditions have been used to characterize dehydration tolerance in wheat. In the present study, a set of 94 doubled haploid lines obtained from Chinese Spring × SQ1 (CSDH), mapped with 450 markers, was evaluated for yield (grain dry weight/main stem ear), number of grains/main stem ear (NG) and chlorophyll a fluorescence parameters (FC) under moderate and severe drought stress, and compared with results for well-watered plants. quantitative trait loci (QTLs) were identified using Windows QTLCartographer version 2.5 software and the results were analysed using single-marker analysis (SMA) and composite interval mapping (CIM). Analysis using SMA and CIM showed mostly similar QTLs for all traits, though more QTLs were identified by SMA than by CIM. The genetic control of yield, NG and FC varied considerably between drought-stressed and non-stressed plants. Although no major QTL co-locations were found for yield and FC using CIM, the co-location of QTLs for NG, yield and Fv/Fm in drought-stressed plants was observed on chromosome 5A using SMA.