Hostname: page-component-cd9895bd7-dzt6s Total loading time: 0 Render date: 2024-12-26T21:14:39.616Z Has data issue: false hasContentIssue false
  • English
  • Français

Development of a composite collection for mining germplasm possessing allelic variation for beneficial traits in chickpea

Published online by Cambridge University Press:  12 February 2007

H.D. Upadhyaya ,
B.J. Furman ,
S.L. Dwivedi ,
S.M. Udupa ,
C.L.L. Gowda ,
M. Baum ,
J.H. Crouch ,
H.K. Buhariwalla  and
S. Singh
H.D. Upadhyaya*
Affiliation:
International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru, 502 324, Andhra Pradesh, India
B.J. Furman
Affiliation:
International Center for Agricultural Research in the Dry Areas (ICARDA), P.O. Box 5466, Aleppo, Syrian Arab Republic
S.L. Dwivedi
Affiliation:
International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru, 502 324, Andhra Pradesh, India
S.M. Udupa
Affiliation:
International Center for Agricultural Research in the Dry Areas (ICARDA), P.O. Box 5466, Aleppo, Syrian Arab Republic
C.L.L. Gowda
Affiliation:
International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru, 502 324, Andhra Pradesh, India
M. Baum
Affiliation:
International Center for Agricultural Research in the Dry Areas (ICARDA), P.O. Box 5466, Aleppo, Syrian Arab Republic
J.H. Crouch*
Affiliation:
International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru, 502 324, Andhra Pradesh, India
H.K. Buhariwalla*
Affiliation:
International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru, 502 324, Andhra Pradesh, India
S. Singh
Affiliation:
International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru, 502 324, Andhra Pradesh, India
*
*Corresponding author. E-mail: [email protected]
†Present address: International Centre for Maize and Wheat Improvement (CIMMYT), Apdo. Postal 6-641, 06 600 Mexico, D.F.,Mexico.
†Present address: International Centre for Maize and Wheat Improvement (CIMMYT), Apdo. Postal 6-641, 06 600 Mexico, D.F.,Mexico.
Get access Rights & Permissions [Opens in a new window]

Abstract

Chickpea is one of the most important grain legume crops in the world. Large collections of genetic resources are maintained in the International Crops Research Institute for the Semi-Arid Tropics (ICRISAT) and International Center for Agricultural Research in the Dry Areas (ICARDA) genebanks. Association mapping using neutral markers has been suggested as a means to identify useful alleles in the vast reservoirs of genetic diversity existing in the germplasm collections that could be associated with the phenotypes among the population individuals. ICRISAT in collaboration with ICARDA developed a global composite collection of 3000 accessions that will be profiled using 50 polymorphic simple sequence repeat (SSR) markers. The data generated through this collaborative effort will be used to define the genetic structure of the global composite collection and to select a reference sample of 300 accessions representing the maximum diversity for the isolation of allelic variants of candidate gene associated with beneficial traits. It is then expected that molecular biologists and plant breeders will have opportunities to use diverse lines in functional and comparative genomics, in mapping and cloning gene(s), and in applied plant breeding to diversify the genetic base of the breeding populations which should lead to the development of broad-based elite breeding lines/cultivars with superior yield and enhanced adaptation to diverse environments.

Keywords

chickpea composite collectiongene miningGeneration Challenge Programgermplasmmolecular markers
Type
Research Article
Information
Plant Genetic Resources , Volume 4 , Issue 1 , April 2006 , pp. 13 - 19
Copyright
Copyright © NIAB 2006

Access options

Get access to the full version of this content by using one of the access options below. (Log in options will check for institutional or personal access. Content may require purchase if you do not have access.)

References

Amirul Islam, FM, Beebe, S, Munoz, M, Tohme, J, Redden, RJ and Basford, KE (2004) Using molecular markers to assess the effect of introgression on quantitative attributes of common bean in the Andean gene pool. Theoretical and Applied Genetics 108: 243–252.CrossRefGoogle Scholar
Gebhardt, C, Ballvora, A, Walkemeier, B, Oberhagemann, P and Schuler, K (2004) Assessing genetic potential in germplasm collections of crop plants by marker-trait association: a case study for potatoes with quantitative variation of resistance to late blight and maturity type. Molecular Breeding 13: 93–102.CrossRefGoogle Scholar
Hüttel, B, Winter, P, Weising, K, Choumane, W, Weigand, F and Kahl, G (1999) Sequence-tagged microsatellite site markers for chickpea (Cicer arietinum L.). Genome 42: 210–217.CrossRefGoogle ScholarPubMed
Ivandic, V, Hackett, CA, Nevo, E, Keith, R, Thomas, WTB and Forster, BP (2002) Analysis of simple sequence repeats (SSRs) in wild barley from the Fertile Crescent: associations with ecology, geography, and flowering time. Plant Molecular Biology 48: 511–527.CrossRefGoogle ScholarPubMed
Ivandic, V, Thomas, WTB, Nevo, E, Zhang, Z and Forster, BP (2003) Association of simple sequence repeats with quantitative trait variation including biotic and abiotic stress tolerance in Hordeum spontaneum. Plant Breeding 122: 300–304.CrossRefGoogle Scholar
Kraakman, ATW, Niks, RE, van den Berg, PMMM, Stam, P, van Eeuwjik, FA (2004) Linkage disequilibrium mapping of yield and yield stability in modern spring barley cultivars. Genetics 168: 435–446.CrossRefGoogle ScholarPubMed
Kresovich, S, Luongo, AJ and Schloss, SJ (2002) Mining the gold: finding allelic variants for improved crop conservation and use. In: Engels, JMM, Rao, VR, Brown, AHD and Jackson, MT (eds) Managing Plant Genetic Diversity. Wallingford: CABI, pp. 379–386Google Scholar
Krishnamurthy, L, Kashiwagi, J, Upadhyaya, HD and Serraj, R (2003) Genetic diversity of drought-avoidance root traits in the mini-core germplasm collection of chickpea. International Chickpea and Pigeonpea Newsletter 10: 21–24.Google Scholar
Niroj, KS, Shokeen, B and Bhatia, S (2003) Isolation and characterization of sequence-tagged microsatellite sites markers in chickpea (Cicer arietinum L.). Molecular Ecology Notes 3: 428–430.Google Scholar
Russell, JR, Booth, A, Fuller, JD, Baum, M, Ceccarelli, S, Grando, S and Powell, W (2003) Patterns of polymorphism detected in the chloroplast and nuclear genomes of barley landraces sampled from Syria and Jordan. Theoretical and Applied Genetics 107: 413–421.CrossRefGoogle ScholarPubMed
Sabharwal, V, Negi, MS, Banga, SS and Lakshmikumaran, M (2004) Mapping of AFLP markers linked to seed coat color loci in Brassica juncea (L) Czern. Theoretical and Applied Genetics 109: 160–166.CrossRefGoogle ScholarPubMed
Serraj, R, Krishnamurthy, L and Upadhyaya, HD (2004) Screening chickpea mini core germplasm for tolerance to salinity. International Chickpea and Pigeonpea Newsletter 11: 29–32.Google Scholar
Shiv, Kumar, Gupta, S, Chandra, S and Singh, BB (2004) How wide is the genetic base of pulse crops? In: Ali, M, Singh, BB, Shiv, Kumar and Dhar, V (eds) Pulses in New Perspective. Proceedings of the National Symposium on Crop Diversification and Natural Resources Management, 20–22 December 2003. Kanpur: Indian Society of Pulses Research and Development, Indian Institute of Pulses Research, pp. 211–221.Google Scholar
Sun, GL, William, M, Liu, J, Kasha, KJ and Pauls, KP (2001) Microsatellites and RAPD polymorphisms in Ontario corn hybrids are related to the commercial sources and maturity ratings. Molecular Breeding 7: 13–24.CrossRefGoogle Scholar
Sun, G, Bong, M, Nass, H, Martin, R and Dong, Z (2003) RAPD polymorphism in spring wheat cultivars and lines with different level of Fusarium resistance. Theoretical and Applied Genetics 106: 1059–1067.CrossRefGoogle ScholarPubMed
Thornsberry, JM, Goodman, MM, Doebley, J, Kresovich, S, Nielsen, D, Buckler, ES IV (2001) Dwarf8 polymorphisms associate with variation in flowering time. Nature Genetics 28: 286–289.CrossRefGoogle ScholarPubMed
Turpeinen, T, Tenhola, T, Manninen, O, Nevo, E and Nissila, E (2001) Microsatellite diversity associated with ecological factors in Hordeum spontaneum populations in Israel. Molecular Ecology 10: 1577–1591.CrossRefGoogle ScholarPubMed
Upadhyaya, HD and Ortiz, R (2001) A minicore subset for capturing diversity and promoting utilization of chickpea genetic resources in crop improvement. Theoretical and Applied Genetics 102: 1292–1298.CrossRefGoogle Scholar
Upadhyaya, HD, Bramel, PJ and Singh, S (2001) Development of a chickpea core subset using geographic distribution and quantitative traits. Crop Science 41: 206–210.CrossRefGoogle Scholar
Winter, P, Pfaff, T, Udupa, SM, Hüttel, B, Sharma, PC, Sahi, S, Arreguin-Espinoza, R, Weigand, F, Muehlbauer, FJ and Kahl, G (1999) Characterization and mapping of sequence-tagged microsatellite sites in the chickpea (Cicer arietinum L.) genome. Molecular and General Genetics 262: 90–101.CrossRefGoogle ScholarPubMed