The impact of human activities on biogeochemical cycles in terrestrial environments is nowhere more apparent than in urban landscapes. Trace metals, collected on roadways and transported by storm water, may contaminate soils and sediments associated with storm water management systems. These systems will accumulate metals and associated sediments may reach toxic levels for terrestrial and aquatic organisms using the retention basins as habitat. The fate and bioavailability of these metals once deposited is poorly understood. Here we present results from a dose-response experiment that examines the application of synchrotron X-ray fluorescence methods (μ-SXRF) to test the hypothesis that earthworms will bio-accumulate Zn in a roadway-dust contaminated soil system providing a potential pathway for roadway contaminants into the terrestrial food web, and that the storage and distribution of Zn will change with the level of exposure reflecting the micronutrient status of Zn.

Lumbricus friendi was exposed to Zn-bearing roadway dust amended to a field soil at six target concentrations ranging from background levels (45 mg/kg Zn) to highly contaminated levels (460 mg/ kg Zn) designed to replicate the observed concentration range in storm-water retention basin soils. After a 30 day exposure, Zn storage in the intestine is positively correlated with dose and there is a change in the pattern of Zn storage within the intestine. This relationship is only clear when μ-SXRF Zn map data is coupled with a traditional toxicological approach, and suggests that the gut concentration in L. friendi is a better indicator of Zn bioaccumulation and storage than the total body burden.

Kalungaite, PdAsSe, is a new mineral discovered in the Buraco do Ouro gold mine, Cavalcante town, Goiás State, Brazil. It occurs in a quartz-muscovite mylonite, related to a peraluminous granite, in platy anhedral aggregates along foliation planes. Associated ore minerals are gold, chalcopyrite, bohdanowiczite, an unnamed Pb-Bi-Se-S mineral, clausthalite, guanajuatite, stibiopalladinite, sperrylite and padmaite. Gangue minerals are muscovite, quartz and rare tourmaline and magnetite. Kalungaite is lead-grey, has a metallic lustre, a black streak and is brittle with uneven fracture. No cleavage was observed. The mineral has a micro-indentation hardness of VHN25 = 438 (range of 429–455 kg/mm2 from five indentations). Under reflected light, kalungaite is cream, or creamy grey adjacent to gold grains, has no internal reflections and is isotropic. Reflectance values in air (and in oil) are: 47.5 (33.3) at 470 nm, 46.9 (32.6) at 546 nm, 46.8 (32.6) at 589 nm and 48.0 (34.0) at 650 nm. The average of eight electron-microprobe analyses gives: Pd 41.32, As 27.49, Bi 0.35, Sb 1.59, Se 27.67 and S 1.22, total 99.64 wt. %, corresponding to Pd1.006(As0.950Sb0.034Bi0.004)Σ0.988(Se0.908S0.099)Σ1.007Kalungaite is cubic, space group Pa, a = 6.089(4) Å, V = 225.78 Å3, Z = 4. Dcalc is 7.59 g/cm3. The strongest seven X-ray powder-diffraction lines [d in Å(I)(hkl )] are: 3.027(75)(002), 1.838(100)(113), 1.172(95)(115, 333), 1.077(80)(044, 144, 334), 0.988(70)(116, 235, 253), 0.929(90)(335) and 0.918(70)(226). Kalungaite is interpreted as having formed from hydrothermal fluids of granitic origin, during syn-emplacement shearing and alteration, producing an unusual gold-platinum-group element deposit.

A suite of orthopyroxenes from spinel Iherzolite xenoliths associated with basanites occurring in the Victorian (Australia) post-Pliocene ‘Newer Volcanics’ province was investigated by means of a crystal chemical methodology which provides accurate site occupancy and site configuration parameters.

The M1 configuration is essentially constrained by AlVI rather than Fe2+. In addition, Fe3+, Cr3+ and Ti4+ are confined to M1 (Molin, 1989) and AlIV to TB. M2 is controlled by FeM22+ ⇌ MgM2, constrained by (Fe2+ + Ca)M2 > 0.14 atoms per formula unit (p.f.u.). Cation substitution in TB and M2 constrains the sum of the volumes of the respective polyhedra VTB+VM2 to remain essentially constant. Therefore, M2 favours the retention of the large Fe2+ up to melting-point, causing non-ideality of this iron-depleted orthopyroxene. As a consequence, the investigated orthopyroxene can be considered an ultimate Fe2+ carrier during partial mantle melting.

Hitachiite, Pb5Bi2Te2S6, is a new mineral discovered in the Hitachi mine, located in the Ibaraki Prefecture of Japan. The mean of 21 electron microprobe analyses gave: Pb 52.01, Bi 23.06, Fe 0.69, Sb 0.17, Te 13.74, S 9.71, Se 0.54, total 100.04 wt.%. The empirical chemical formula based on 15 apfu is (Pb4.75Fe0.23)Σ4.98(Bi2.09Sb0.03)Σ2.12Te2.04(S5.73Se0.13)Σ5.86, ideally Pb5Bi2Te2S6. Synchrotron single-crystal X-ray diffraction experiments indicated that hitachiite has trigonal symmetry, space group P${\bar 3}$m1, with a = 4.2200(13) Å, c = 27.02(4) Å and Z = 1. The four strongest diffraction peaks shown in the powder X-ray pattern [d, Å (I)(hkl)] are: 3.541(35)(012), 3.391(59)(013), 3.039(100)(015) and 2.114(56)(110). The calculated density (Dcalc) for the empirical chemical formula is 7.54 g/cm3.

The crystal structure of hitachiite has been refined using synchrotron single-crystal X-ray diffraction data, to R = 7.38% and is based on ABC-type stacking of 15 layers (five Pb, two Bi, two Te, and six S layers) along the [001] direction, and with each layer ideally containing only one kind of atom. The stacking sequence is described as Te–Bi–S–Pb–S–Pb–S–Pb–S–Pb–S–Pb–S–Bi–Te. The discovery of hitachiite implies that the minerals of the Bi2Te2S–PbS join might form a homologous series of Bi2Te2S·nPbS.

A second occurrence of ferri-fluoro-leakeite has been identified in the Bratthagen nepheline syenite pegmatite (Vestfold County, Norway). With respect to the holotype found at the Verkhnee Espe deposit (Akjailyautas Mountains, Kazakhstan; Cámara et al., 2010), it is closer to the ideal composition because of its larger Li and Mg contents and the absence of an oxo-component; however, it has a significant Zn content (0.29 a.p.f.u.). The ideal formula of ferri-fluoro-leakeite is ANaBNa2 C(Mg2Fe2 3+Li)TSi8O22WF2 and the empirical formula derived from electron-microprobe analysis and single-crystal structure refinement for the sample used here is A(Na0.68K0.32)S=1.00BNa2.00 C(Mg1.69Mn0.25 2+Fe0.24 2+Zn0.29Al0.23Fe1.50 3+Ti0.02Li0.78)S=5.00TSi8O22W(F1.59(OH)0.41)S=2.00. Unitcell data are a = 9.788(2), b = 17.826(3), c = 5.282(1) Å, β = 104.195(5)°, V = 893.5 (3) Å3, Z = 2. Crystal-chemical analysis shows that Li is ordered at the M(3) site and Zn is ordered mainly at the M(2) site, confirming previous findings for Li-bearing amphiboles. The new data also make quantification of the oxo component in Na amphiboles possible.

Cu K-edge extended X-ray absorption fine structure (EXAFS) spectra have been obtained for two very dilute solutions of copper in hydrosulfide solutions using beamline ID26 at the ESRF. The concentrations of the solutions (4.4 ppm {69 µM} pH 9.5, 1.2 ppm {19 µM} pH 7.4) are such that the experiments illustrate that, with the advent of third generation synchrotron sources, natural systems can now be studied by EXAFS. Analysis of the data indicates an average environment for the copper of 2.3 S atoms at 2.22 Å in the pH 9.5 solution of 2.5 S atoms at 2.23 Å in the pH 7.4 solution. These results are in accord with the solubility study of Mountain and Seward (1999), who conclude that Cu(HS)2− and Cu2(HS)2S2− are the principal copper species in such solutions.

Carbon-14 has been identified as one of the more significant radionuclides in solid radioactive wastes in a repository, due to the potential radiological impact arising if 14C were to be released and enter the biosphere. However, the assessment of radiation doses is complicated by the major role of carbon in biological processes, and this has tended to lead to the adoption of a cautious assessment approach.

An international comparison of five models used to predict uptake of 14C to agricultural crops has been undertaken, within the BIOPROTA framework. Processes investigated include conversion of 14C-labelled CH4 into CO2 in soils, carbon accumulation in and release from soil carbon pools, gaseous emanation to, and dispersion from, the plant canopy atmosphere and, incorporation into plants by photosynthesis.

For a unit rate of entry of 14C to soil, modelled activity concentrations in cereal crops differ by three to five orders of magnitude. This reflects, in part, differing assumptions for mixing and dispersion of air above the soil surface and within the crop canopy layer. For a unit activity concentration of 14C in air, the modelled uptake to cereal crops converges significantly. Following an assumed irrigation of crops with groundwater containing unit activity of 14C, the predicted uptake to crops varied by two to four orders of magnitude, again largely dominated by assumptions regarding the canopy atmosphere. In all cases, there is some convergence in model predictions as field size increases.

A continuing programme of field research is being undertaken in parallel with the assessment work.

Metamorphosed troctolite cumulates occur interbedded with Mg-rich metagabbros in the Monviso ophiolitic massif; they have developed chloritoid, omphacite, talc and garnet during the eclogitic stage of the Eo-alpine metamorphism. The lack of penetrative deformation in the rocks has made it possible to recognize different microstructural sites of chloritoid growth, in which the chloritoid composition may vary widely and is controlled by the specific inherited chemical domain.

The chloritoid compositions are unusually rich in Cr and Mg with large variations in Fe2+/Mg and Cr/AlVI ratio. The Cr/Al ratio in chloritoid is linked to both the Cr value of the primary minerals (i.e. Cr-rich spinels, Cr-end-members in the clinopyroxenes) and a limited redistribution of Cr during metamorphism. The Fe2+/Mg ratio, while being partly affected by bulk composition of the host rocks, also varies between different microstructural sites; the highest ratio is recorded in coronas between clinopyroxene and plagioclase, lower values occurring in coronas between plagioclase and olivine.

The crystal structure of buttgenbachite from Likasi (Congo) was solved by a three- dimensional Patterson function, computed using intensity data collected photographically by the Weissenberg method, and refined by successive Fourier maps and least-squares refinement to an R index 0·055 for 328 independent observed reflections. The cell content resulting from the structural analysis is Cu36·6Cl6·7(NO3)2·6(OH)63·9.2·1 H2O. The space group is P63/mmc with a = 15·750 Å and c = 9·161Å. The buttgenbachite structure is not completely ordered. It consists of a rigid three-dimensional skeleton formed by Cu co-ordination polyhedra sharing edges and corners. The large channels in the framework show a zeolite-like nature; inside the channels the disorder is caused by the different orientations of nitrate groups and by the occurrence of the substitution . The crystal structure of buttgenbachite is closely related to that of connellite. The mechanism of forming an isomorphous series is discussed: the present study shows that the replacement is more complicated than was supposed in the literature.

The new mineral species carducciite, (AgSb)Pb6(As,Sb)8S20, has been discovered in the baryte-pyrite- (Pb-Ag-Zn) deposit of the Pollone mine, near Valdicastello Carducci, Apuan Alps, Tuscany, Italy. It occurs as black metallic prismatic crystals, up to 0.5 mm long, associated with pyrite and sterryite. Its Vickers hardness (VHN10) is 61 kg/mm2 (range: 52–66), corresponding to a Mohs hardness of ~2½–3. In reflected light, carducciite is dark grey in colour, moderately bireflectant; internal reflections are very weak and deep red in colour. Reflectance percentages for the four COM wavelengths [Rmin, Rmax (%) (λ)] are: 35.8, 40.8 (471.1 nm), 33.7, 39.0 (548.3 nm), 32.7, 37.6 (586.6 nm) and 30.4, 35.1 (652.3 nm). Electron microprobe analysis gives (wt.% – mean of six analyses): Ag 3.55(12), Tl 0.13(3), Pb 41.90(42), Sb 17.79(19), As 12.41(14), S 22.10(17), total 97.9(6). On the basis of ΣMe = 16 a.p.f.u., the chemical formula is Ag0.96Tl0.02Pb5.91As4.84Sb4.27S20.14. The main diffraction lines, corresponding to multiple hkl indices, are (relative visual intensity): 3.689 (s), 3.416 (s), 3.125 (s), 2.989 (s), 2.894 (s), 2.753 (vs), 2.250 (s). The crystal-structure study gives a monoclinic unit cell, space group P21/c, with a 8.4909(3), b 8.0227(3), c 25.3957(9) Å, β 100.382(2)°, V 1701.63(11) Å3, Z = 2. The crystal structure has been solved and refined to a final R1 = 0.063 on the basis of 4137 observed reflections. It can be described within the framework of the sartorite homologous series, as formed by chemically twinned layers of the dufrénoysite type. The simplified idealized structural formula, based on 20 sulfur atoms, can ideally be written as (AgSb)Pb6(As,Sb)Σ=8S20. Carducciite is an (Ag,Sb)-rich homeotype of dufrénoysite, stabilized by the complete coupled substitution 2 Pb2+ = Ag+ + Sb3+ on a specific site of the crystal structure. Together with barikaite, it belongs to the rathite sub-group of P21/c homeotypes of dufrénoysite, of which the crystal chemistry is discussed. The distribution of Ag, coupled with As or Sb on specific sites, appears to be the main criterion for the distinction between the three species of this sub-group.

Kitagohaite, ideally Pt7Cu, is a new mineral from the Lubero region of North Kivu, Democratic Republic of the Congo. The mineral occurs as alluvial grains that were recovered together with other Pt-rich intermetallic compounds and Au. Kitagohaite is opaque, greyish white and malleable and has a metallic lustre and a grey streak. In reflected light, kitagohaite is white and isotropic. The crystal structure of kitagohaite is cubic, space group Fmm, of the Ca7Ge type, with a = 7.7891(3) Å, V = 472.57(5) Å3 and Z = 4. The strongest diffraction lines [d in Å(I)(hkl)] are: 2.246 (100)(222), 1.948(8)(004), 1.377 (77)(044), 1.174(27)(622), 1.123 (31)(444) and 0.893 (13)(662). The Vickers hardness is 217 kg mm−2 (VHN100), which is equivalent to a Mohs hardness of 3½ and the calculated density is 19.958(2) g cm−3. Electron-microprobe analyses gave a mean value (n = 13) of 95.49 wt.% Pt and 4.78 wt.%Cu, which corresponds to Pt6.93Cu1.07 on the basis of eight atoms. The new mineral is named for the Kitagoha river, in the Lubero region.

Ejecta associated with the Xalapasco de la Joya maar 33 km northeast of San Luis Potosi, SLP, Mexico, contain a diverse assemblage of nodules of postulated lower-crust/upper-mantle origin. Spinel lherzolites constitute the most abundant group of nodules and display chemical evidence that crystallization or equilibration took place at temperatures and pressures consistent with upper mantle genesis. Estimated equilibration temperatures and pressures range from 825 to 1025 °C and 7 to 19 kb.

The form and thickness of the ferrihydrite coating on kaolinite basal surfaces was studied in mixes containing 1–10% ferrihydrite through a combination of TEM, shadowed replicas, selected area electron diffraction, and determinations of surface area and distribution of charge on the surfaces. At pH3 the ferrihydrite was found to attach initially as single particles to certain sites on the kaolinite. These particles grew laterally and vertically until with 4% ferrihydrite they were aggregates of from 8 to 25 layers of particles. With more ferrihydrite the aggregates coalesced. Despite the irregular cover on the kaolinite satisfactory electron diffraction patterns were obtained and as little as 2% ferrihydrite was detected in a mixture at pH3.

Manganiferous garnets occur in metamorphosed Mn silicate-oxide and silicate-carbonate-oxide rocks of the Sausar Group, India. The garnets of the carbonatic rock show maximum calderite content (∼50 mole%). Increased Ca content in the bulk has been observed to be sympathetically related to the concentration of calderite, rather than the expected andradite component of the garnets. This is the consequence of the preferential partitioning of Ca in coexisting pyroxmangite and/or carbonate. Petrochemical characteristics of the diverse assemblages in response to the physical conditions of metamorphism show that the calderite solubility in manganiferous garnet is not only a function of pressure. Such characteristics only indicate that the mobile components in the bulk influenced the mineralogy of the assemblages at the ambient physical conditions of metamorphism, and this in turn controlled the calderite solubility in garnet.

Pale-blue cordierite (complete analysis given; shows total iron oxides only 0·98 %) occurs in phlogopite schist near White Well (24° 28′ 30″ S. 116° 2′ E.) 20 miles north-west of Yinnietharra, Western Australia. Associated minerals are corundum, dravite, and sillimanite, accessory zircon and rutile. The cordierite is in translucent masses to 8 ×8×4 cm with vitreous lustre, D 2·57, α 1.536, β 1·540, γ 1·543, all colourless, 2Vα80° Unit cell a 17·055, b 9·724, c 9·350 Å. The host phlogopite (complete analysis given) is in brown flakes to 1 cm, D 2·88, α 1·558, β 1·585, γ 1·59, 2Vα 5–20° 1 M polymorph.

New guidelines for the nomenclature of polymorphs and polysomes have been approved by the the Commission on New Minerals, Nomenclature and Classification of the International Mineralogical Association (IMA–CNMNC). Several cases can be distinguished. (i) Polymorphs with different crystal systems are distinguished by the prefixes cubo- (cubic), hexa- (hexagonal), tetra- (tetragonal), trigo- (trigonal), ortho- (orthorhombic), clino- (monoclinic) and anortho- (triclinic). (ii) Polymorphs with different crystal systems but showing a pseudosymmetry should show the prefix ‘pseudo-’. (iii) Polymorphs with the same crystal system but different space groups are distinguished by the prefix ‘para-’. If three or more polymorphs show the same crystal system but different space groups, the space group notation may be added as a suffix, though such a nomenclature should be avoided if possible. (iv) Polymorphs with the same space group are distinguished by the prefix ‘para-’. (v) Minerals with polymorph suffixes but with different chemical compositions cannot be considered as true polymorphs, so we recommend using the prefix ‘meta-’, which indicates a close but significantly different chemical composition. (vi) Polysomatic symbols should be placed as a suffix, which indicates the number and types of modules that alternate in the structure, such as in the högbomite supergroup, or as prefixes as in the sartorite homologous series. These recommendations have to be applied for future new mineral proposals, when the authors decide to use structural prefixes or suffixes, however modifications of historical and well-established names have to pass through the CNMNC for approval. In order to be consistent with the new guidelines, 25 mineral names are now modified: domeykite-β becomes trigodomeykite; fergusonite-(Y)-β becomes clinofergusonite-(Y); fergusonite-(Ce)-β becomes clinofergusonite-(Ce); fergusonite-(Nd)-β becomes clinofergusonite-(Nd); ice-VII becomes cubo-ice; roselite-β becomes anorthoroselite; sulphur-β becomes clinosulphur; mertieite-II becomes mertieite; mertieite-I becomes pseudomertieite; uranophane-α becomes uranophane; uranophane-β becomes parauranophane; gersdorffite-P213 becomes gersdorffite; gersdorffite-Pa3 becomes paragersdorffite; gersdorffite-Pca21 becomes orthogersdorffite; betalomonosovite becomes paralomonosovite; lammerite-β becomes paralammerite; nováčekite-I becomes hydronováčekite; nováčekite-II becomes nováčekite; halloysite-7Å becomes halloysite; halloysite-10Å becomes hydrohalloysite; metauranocircite-I becomes metauranocircite; taimyrite-I becomes taimyrite; uranocircite-II becomes uranocircite; andorite IV becomes quatrandorite; and andorite VI becomes senandorite.

About twelve miles south-east of Burghersdorp in the Cape Province, South Africa, the unusual clay reported in this paper was first discovered on the farms 'Groenvlei' and 'Kuilfontein'. Later deposits were also uncovered on the farms 'Kapokkraal' and 'Kleinhoek'.

The clay-mineral appears to be of a very unusual type, namely, a regular mixed-layer clay-mineral (1:1 hydrous mica and montmorillonite). The mode of origin of the clay is also of interest in that it appears to be produced from a shale by hydrothermal alteration, due to intrusion of dolerite sheets.

The surface structure of blende crystals from Joplin, Jasper County, Missouri, U.S.A., has been explored by the application of phase-contrast microscopy and light-profile microscopy. Attention has been specially directed to the small-scale features with thicknesses (or depths) of molecular dimensions.

Some growth features of special interest were observed. A large number of beautifully developed growth spirals were observed on the tetrahedral face of a blende crystal. These are in accord with the dislocation theory of Burton, Cabrera, and Frank. The high visibility of these growth spirals is possibly due to the preferential deposition of some impurity, or etching, which also gives a mottled appearance to the entire surface. In addition, an extensive microscopic structure has been observed on some crystal faces. Triangular growth terraces and markings are seen, both orientated parallel to the edges of the crystal. Some triangles, inverted with respect to the latter, have been explained on similar lines to the well-known ‘growth trigons’ on the octahedral faces of diamond as arising from imperfect dislocations.

An attempt has been made to explain the growth features in the light of known theories of crystal growth.

Physico-Chemical data clearly show that the presence of tridymite in a rock indicates the prevalence not only of high temperatures, but also of relatively low pressures during the formation of that rock. Whereas many authors (e.g. Shand, 1927; Larsen, 1936) have used tridymite as an indicator of temperature, the importance of tridymite as an indicator of pressure has been largely overlooked.

Although the presence of tridymite is by itself sufficient to enable the pressure, and hence the depth, at which a rock formed to be estimated within certain limits, the presence of tridymite in association with some other pressure-or temperature-indicating mineral allows much closer limits to be set.