The mountain ecosystem of the Central Himalayan Region is known for its diversity of crops and their wild relatives. In spite of adverse climatic conditions, this region is endowed with a rich diversity of millets. Hence, the aim of the present study was to explore, collect, conserve and evaluate the diversity of barnyard millet (Echinochloa frumentacea) to find out the extent of diversity available in different traits and the traits responsible for abiotic stress tolerance, and to identify trait-specific accessions for crop improvement and also for the cultivation of millets in the region as well as in other similar agro-ecological regions. A total of 178 accessions were collected and evaluated for a range of morpho-physiological and biochemical traits. Significant variability was noted in days to 50% flowering, days to 80% maturity, 1000 seed weight and yield potential of the germplasm. These traits are considered to be crucial for tailoring new varieties for different agro-climatic conditions. Variations in biochemical traits such as lipid peroxidation (0·552–7·421 nmol malondialdehyde formed/mg protein/h), total glutathione (105·270–423·630 mmol/g fresh weight) and total ascorbate (4·980–9·880 mmol/g fresh weight) content indicate the potential of collected germplasm for abiotic stress tolerance. Principal component analysis also indicated that yield, superoxide dismutase activity, plant height, days to 50% flowering, catalase activity and glutathione content are suitable traits for screening large populations of millet and selection of suitable germplasm for crop improvement and cultivation. Trait-specific accessions identified in the present study could be useful in crop improvement programmes, climate-resilient agriculture and improving food security in areas with limited resources.

The hull or husk of rice, comprising the lemma and palea, provides a fitting enclosure for the caryopsis. The physiological significance of the hull in seed dormancy has been examined by comparing the effects of its removal on germination, seed vigour, assimilate mobilization and ethylene production in germinating seeds of six rice genotypes; two each belonging to dormant, semi-dormant and non-dormant groups. Hull removal promoted the above parameters in all three categories of seeds, but the effect was relatively higher in dormant seeds compared with less dormant categories. Ethylene production in non-dormant seeds was initiated after imbibition of water, normally before visible emergence of the radicle. It peaked when the radicle began to protrude and declined thereafter. In comparison, dormant seeds produced very low levels of ethylene during germination; however, hull removal resulted in a dramatic rise in its production. Overall, ethylene evolution at the radicle protrusion stage correlated negatively with germination time. It was concluded that ethylene production starts with breaking of the caryopsis coat and peaks when the radicle ruptures it completely, at the stage of radicle visible emergence. Removal of the hull facilitates germination and ethylene production can be a good indicator for the progress of germination.

Maize (Zea mays L.) is a major staple food and cash crop in sub-Saharan Africa (SSA). However, its production and productivity are severely constrained by drought. A total of 120 single-cross hybrids and an open-pollinated control variety were evaluated for 2 years at two locations under managed drought and rain-fed conditions in Nigeria. The objective of the present study was to assess their performance, classify them into distinct heterotic groups and identify promising hybrids for commercialization in the West and Central Africa sub-region. General combining ability and specific combining ability mean squares were highly significant for grain yield and other traits under the research environments. However, there was a preponderance of additive gene action over non-additive. Only six out of 39 inbreds were classified into distinct heterotic groups by the testers. The highest-yielding drought-tolerant hybrid, TZEEI 102 × TZEEI 95, out-yielded the open-pollinated control variety by 43·70%. The average yield reduction under drought was 54·90% of the yield under rain-fed conditions. The hybrids TZEEI 81 × TZEE1 79, TZEEI 100 × TZEEI 63 and TZEEI 64 × TZEEI 79 were the highest-yielding and most stable across environments. These outstanding drought-tolerant hybrids, which are also resistant to Striga, have the potential to contribute to food security and increased incomes in SSA and should be tested extensively on-farm and commercialized.

Late sowing causes substantial yield reduction in canola. This yield reduction is principally due to lower emergence and poor crop establishment because of prevailing low temperatures. A field experiment was conducted using five sowing dates over two growing seasons (2014/15 and 2015/16). The effect of two seed-priming strategies (hydropriming and osmopriming with zinc sulphate, ZnSO4) was measured in three canola cultivars (Okapi, Zarfam and Talayeh). Results showed that both seed-priming treatments were effective in improving emergence percentage (EP) of canola cultivars. The highest EP occurred in the earlier sowing in both years. On 5 September, EP for the hydropriming, osmopriming and no-primed treatments were 89, 93 and 73% in Okapi, 83, 89 and 69% in Zarfam, and 81, 89 and 72% in Talayeh, respectively (data averaged across both years). Delay in sowing date compared with 5 September caused a sharp reduction in EP in primed seed and control conditions. Maximum seedling emergence rate and coefficient of uniformity of emergence were seen in early sowing for Okapi cultivar with ZnSO4 osmopriming. Experimental evidence showed that in canola cultivars the activities of superoxide dismutase, peroxidase and catalase were higher in the leaves of plants from seed primed with ZnSO4 compared with seed from hydroprimed plants. Cultivar analysis of total antioxidant content activities indicated, the maximum increase was observed in the Okapi and Talayeh cultivars.

The number of replications and locations used in a cultivar evaluation scheme is an important factor affecting the trial heritability (H) and optimum resource allocation. The aim of the present study was to calculate the required number of replications and locations for realizing an optimum H of 0·75 and to identify the most effective test locations for cotton (Gossypium hirsutum L.) in Greece. The data for lint yield, plant height, verticillium wilt (Verticillium dahliae Kleb.) and fibre quality were derived from an 8-year experiment (2000–2007) conducted under irrigated, Mediterranean conditions at 14 locations along the Greek mega-environment. Analysis of variance was performed to calculate H as well as genotype plus genotype × environment (GGE) biplot analysis to determine the location's desirability. It was determined that the four replications currently used in the evaluation of lint yield were sufficient, whereas four locations were proposed as optimum in lieu of the current 8–14 locations used in the evaluation. Two locations excelled as the most effective for lint yield evaluation and one for selection of genotypes tolerant to verticillium wilt using as criteria: the high and consistent across years H (0·75), GGE biplot representativeness and discriminating ability. Moreover, one location was selected as a backup based on average trial failures. Plant height was sufficiently evaluated by four replications and two locations, while verticillium required four replications for realizing lower H (0·60) and three locations for even lower H (0·40). Regarding quality, an increase of replications from the two currently used to four was sufficient for evaluation of all the traits. The advantage of reducing the number of locations for evaluation of lint yield to just four casts no doubt on the evaluation precision of lint percentage, length, strength and elongation but does for micronaire, short fibre index and uniformity, which realized lower H (0·60 or 0·50).

The present study investigated the dry matter yield (DMY) and arbuscular mycorrhizal (AM) colonization (internal hyphae, arbuscules, and vesicles) of two genotypes of zoysia grass (Zoysia japonica strain Aso and cv. Asagake) at three rates (10, 20 and 40 g N/m2/year) of application of digested slurry (DS) or mineral fertilizer. Soil chemical properties (available phosphorus concentration, pH and electrical conductivity (EC)) were also measured as factors associated with AM colonization. The fertilizer type (DS v. mineral fertilizer) had an effect on DMY depending on the plant genotypes but had little or no effect on AM colonization, and soil chemical properties, indicating that DS can be used as a substitute for mineral fertilizer; however, it is necessary to apply it taking into account the ratio of inorganic nitrogen (N). However, heavy DS application decreased colonization by internal hyphae. Furthermore, even at the lowest rate, the continuous application of DS decreased colonization by arbuscules and vesicles in both genotypes, which were associated with decreasing soil pH and increasing EC. The results suggest that zoysia grass should be fertilized with DS at a rate of <10 g N/m2/year in order to achieve a continuous association with AM fungi, although this range of N application is sub-optimal for zoysia grass production.

Winter rapeseed was introduced into Greece a decade ago to provide oil for biodiesel. To identify agronomic traits affecting yield and quality, three hybrids and an inbred line were tested over two seasons (2005–2006 and 2006–2007) and four locations, in central and northern Greece, varying in pedo-climatic conditions. The large variations in seed yield, quality and agronomic traits were largely ascribed to location; in contrast, cultivar accounted for ⩽0·010 of the variation for many traits. Below 40°N, rapeseed is a risky crop; short season, high temperatures and low rainfall during reproductive growth diminished seed yield and oil content, increased oleic and erucic acid and minimized linolenic acid. A hybrid, Exact, with tall stature and large seeds was adaptive to such conditions. The most productive location had dense stands with tall plants bearing numerous pods on the main raceme. At the site with the coldest winter, plant density (PD) was lowest (ca. 30 plants/m2) but rapeseed compensated by producing large seeds, with high oil content and harvest index (HI). A biplot revealed that the hybrid Excalibur, outperforming the other cultivars for oil content in six out of eight trials, produced the highest and most stable oil yield. Combined data showed that seed yield and oil yield were positively correlated with PD, seed size and HI and negatively to the number of pods on branches and per plant. Large seeds had high seed oil content. Oleic acid was negatively correlated to linolenic acid concentration. High temperatures and low rainfall favoured oleic acid, which was positively associated with seed number per pod.

Knowledge of genetic diversity of confectionary sunflower can have a large impact on its use in breeding programmes. However, levels and distribution of genetic variation within the confectionary sunflower gene pool are still not adequately explored. The aim of the present paper was to describe the diversity of 68 confectionary sunflower genotypes: open-pollinated varieties, lines and hybrids. A total of 32 morphological traits were used for characterization. The Shannon & Weaver diversity index (H) was estimated as a measure of morphological diversity. The mean value of the Shannon index was 0·71, which indicates a high morphological diversity. The lowest diversity was found for leaf descriptors, moderately high to high for seed traits, while the highest values were found for disc flowers and ray florets. The highest individual descriptor diversity was found for: head attitude, the angle of leaf lateral nerves and ray floret disposition. The homogeneity analysis (HOMALS) multivariate reduction technique for nominal categorical data proved to be an efficient method for a comprehensive overview of genotype diversity and group homogeneity. Besides diversity, the number of categories and uniformity of genotype distribution determines discriminative power of descriptors. Traits that contributed the most to the distinction of genotypes were identified, enabling differentiation of genotypes with similar phenotypic attributes. The highest discriminative power was observed in traits such as anthocyanin colouration of stigma (DFIA), seed colour of stripes and seed main colour. The genotypes tested formed two distinctive major groups of varieties and hybrids with inbred lines widely dispersed along both axes. A separate grouping was obtained per the most discriminative traits based on HOMALS analysis, while the best separation was obtained using DFIA. Isolated genotypes that may not be representative by yield or seed-specific traits can be useful sources of traits for breeding. Morphological characterization can be used to improve description and classification of confectionary sunflower germplasm when evaluating diversity.

Greenbug infestations to sorghum can cause severe and above economic threshold damage in the Great Plains of the United States. The current study was conducted to identify quantitative trait loci (QTLs) and potential candidate genes residing within the QTL region responsible for greenbug resistance in an advanced mapping population. Inter-crossed populations are useful in detecting QTLs tightly linked to genetic markers with high resolution. In the current study, QTLs responsible for greenbug resistance in sorghum were mapped using an inter-cross population derived from two parents, BTx623 (greenbug-susceptible line) and PI 607900 (greenbug-resistant line). Molecular markers for 115 loci were used to construct a linkage map which eventually facilitated tagging portions of the sorghum genome regions responsible for greenbug resistance. The molecular genetic map covered all the chromosomes of sorghum with a total genome length of 963·0 cM. The advanced mapping population revealed and confirmed the location of greenbug resistance loci, which explained a high phenotypic variation from 72·9 to 80·9% of greenbug resistance. The loci for greenbug resistance were mapped to the region flanked by markers Starssbnm 93 and Starssbnm 102 on chromosome 9 with an increased allelic effect from the resistant parent. The locations of these loci were compared with a previous study on QTL analysis using an F2 mapping population. The results from the present study were in agreement with the findings in the F2 QTL analysis and identified QTLs had a better confidence interval. The markers/QTLs identified from the current study can be effectively utilized in marker-assisted selection and map-based cloning experiments.

Honeybee foraging can transfer exogenous genes from genetically modified (GM) oilseed rape (Brassica napus L.) to closely related plants, which not only induces potential ecological risks but also contaminates non-GM seeds or honey products with GM ingredients. These events may lead to international trade disputes. Chinese honeybees (Apis cerana cerana Fabricius) and a herbicide (glufosinate)-resistant GM strain of B. napus (Z7B10) were studied to examine the effects of honeybee short-range foraging on oilseed rape gene flow and honey ingredients. Results showed variable frequencies of gene flow between GM and non-GM oilseed rape cultivars, with the highest frequency under nylon net isolation with artificially stocked honeybees, the lowest frequency under nylon net isolation alone, and an intermediate frequency under natural pollination, suggesting the important role of honeybee foraging in gene flow frequency. Additionally, GM pollen grains were found in honey collected from honeybees foraging on both GM and non-GM oilseed rape cultivars. The phosphinothricin acetyltransferase protein was also detected in both unbroken pollen-containing and pollen-free honey by protein testing strips, suggesting that honeybee foraging on GM oilseed rape could lead to contamination with GM ingredients. Overall, the results provide a direct scientific basis for the ecological risk assessment and safety management of GM oilseed rape.

Conventionally perennial ryegrass evaluations are conducted under simulated grazing studies to identify varieties with the best phenotypic performance. However, cut-plot environments differ greatly to those experienced on commercial farms as varieties are not exposed to the same stress levels in test environments. It could be argued that plot-based testing regimes provide little direction to plant breeders in the development of advanced varieties. Varietal phenotypic performance needs to be quantified in ‘commercial’ situations. The objective of the current study was to evaluate the phenotypic performance of a range of perennial ryegrass varieties under commercial farm conditions. Monocultures of 11 Irish Recommended List perennial ryegrass varieties were sown on 66 commercial farms throughout Ireland where performance was evaluated over a 3-year period from 2013 to 2015, inclusive. A linear mixed model was used to quantify variety effects on grassland phenotypic performance characteristics. No significant variety effect was estimated for total, seasonal or silage herbage production. Despite the lack of variety effects, pairwise comparisons found significant performance differences between individual varieties. Grazed herbage yield is of primary importance and was shown to be correlated strongly with total production (0.71); Grazed herbage yield differed significantly by variety, with a range of 1927 kg dry matter (DM)/ha between the highest and lowest performing varieties. Sward quality (dry matter digestibility [DMD]) and density were influenced by variety with a range of 44 g/kg DM for DMD and 0.7 ground score units between the highest and lowest performing varieties. Results of the current study show that on-farm evaluation is effective in identifying the most suitable varieties for intensive grazing regimes, and the phenotypic variance identified among varieties performance for many traits should allow for improved genetic gain in areas such as DM production, persistence and grazing efficiency.

Conversion of pig slurry to pellets is a desirable fertilizer option for farmers who want to mitigate environmental pollution from slurry accumulation. The goals of the current investigation were to determine the fertilizer properties of pig slurry solid fraction (SF) pellets and to assess its potential to enhance soil properties in order to reduce ammonia (NH3) volatilization and greenhouse gas (GHG) emissions. Various parameters influence SF-based pellet fertilizer effectiveness: bulking agent use during composting, pellet diameter sizing and soil application type (superficially or incorporated into the soil). Two composts from the same pig slurry SF obtained from a screw press separator were prepared: pig SF compost without a bulking agent (SSFC) and pig SF compost with wood chips as the bulking agent (wood chip compost (WCC)). For each compost type, pellets of two different diameters (6 and 8 mm) were produced. A mesocosm experiment, conducted with maize plants, was used to test the fertilizer value of the considered pellets. In total, three compost fertilizers – SSFC, WCC and nitrogen: phosphorus: potassium mineral fertilizer 15 : 15 : 15, plus one unfertilized control treatment – were applied at the same N rate (equivalent to 200 kg/ha) using two different methods (surface and soil incorporation). After 65 days, above-ground biomass, roots and soil samples were collected and analysed. Subsequently, a second mesocosm study was undertaken to measure NH3 and GHG emissions released from pellet fertilization. Ammonia volatilization was determined immediately after pellet application, while carbon dioxide (CO2), methane (CH4) and nitrous oxide (N2O) emissions were monitored for 57 days. Study results indicated that both pellet types were effective slow-release fertilizers for maize. Additionally, three actions seemed to make the nutrients contained in pig SF compost pellets more available to plants: addition of a bulking agent before composting, use of small diameter pellets and soil incorporation of the fertilizer.

The objective of the present study was to determine the pasture intake of European wild boar and domestic pigs throughout their growth period (from 60 to 207 days of age). The proportion of time that each animal type spent grazing was also determined. Twelve 60-day-old pure-bred European wild boar (six castrated males and six females, average live-weight (±s.e.m.) 6·8 ± 0·37 kg) and 12 70-day-old domestic pigs (Large White × Landrace, six castrated males and six females, average live-weight [ ± s.e.m.] 24·1 ± 0·66 kg) were used in the study. Each day during the study, the animals grazed from 08·00 until 16·00 h, after which they had ad-libitum access to a supplemental diet for 1 h. Every 14 days throughout the study (a total of ten determinations), the pasture consumption was determined as the difference between the pasture dry matter (DM) availability pre- and post-grazing. The supplemental diet consumption was also determined. Three times during the study (age of animals 85, 140 and 198 days), the behaviour of each animal was observed over four consecutive days while grazing. When considered on a metabolic bodyweight basis, the pasture consumption of the European wild boar was greater than that in the domestic pigs. Approximately 0·20 of the total DM intake by the wild boar was pasture, whereas only 0·10 of the total DM intake by the domestic pigs was pasture. However, domestic pigs consumed a greater quantity of supplemental diet than the wild boar. The wild boar obtained 0·20 of their total daily dietary apparent energy intake from pasture, compared with 0·07 in the domestic pigs. Wild boar were more active during 8-h grazing periods spending 0·54 of their time grazing or moving around, compared with 0·32 of the time in domestic pigs.

The present study aimed to explore the molecular factors underlying differences in Calpain/Calpastatin proteolytic system in Nellore and Angus cattle. Longissimus muscle samples were collected in Nellore (n = 6; body weight (BW) = 373 ± 37·3 kg) and Angus (n = 6; BW = 383 ± 23·9 kg) cattle at slaughter for analysis of gene and protein expression, and Calpastatin enzyme activity. Additionally, the myofibrillar fragmentation index was used to quantify the extension of proteolysis in longissimus muscle samples. A greater myofibrillar fragmentation was observed in skeletal muscle of Angus compared with Nellore cattle. Conversely, no differences were found between breeds for mRNA expression of Calpain 1 (CAPN1) and Calpastatin (CAST). Similarly, no differences were observed for the abundance of Calpain and Calpastatin proteins between skeletal muscles of Nellore and Angus cattle. Despite the lack of differences in mRNA and protein abundance, a greater activity of Calpastatin was observed in skeletal muscle of Nellore compared with Angus cattle. These data indicate that the greater proteolysis in skeletal muscle of Angus compared with Nellore cattle is mainly driven by a greater Calpastatin activity rather than Calpain or Calpastatin mRNA and protein expression.

Sugarcane is an important forage resource in sub-tropical and tropical areas as it is used during the winter or dry season when the growth rate of pastures is significantly reduced. The current research study assessed the effect of four vertical sections of sugarcane in a pen trial and the level of sugarcane utilization in a grazing trial on the ingestive behaviour and forage intake of two age groups of steers (1 and 2 years old). The pen trial was comprised of two simultaneous 4 × 4 balanced Latin square designs (one for each age group of animals) of four periods, four animals and four feeding treatments, which consisted of four equal vertical sections of sugarcane. Dry matter (DM) and digestible DM (DDM) intake per kilogram of metabolic weight declined gradually from top to bottom of the sugarcane, with no significant differences between the age groups of steers. This difference in intake was associated with a decline in intake of neutral detergent fibre (NDF) as a proportion of the liveweight of the animal and an increase of total chewing time per kilogram of DM or NDF from top to bottom of the sugarcane. It was concluded that the toughness of plant material played a significant role regulating intake, which was higher for the top sections of sugarcane. In the grazing trial, steers of both age groups grazed down sugarcane in three plots over 9 days. Steers grazed up to four distinctive grazing strata. Digestible DM intake (DDM intake) was high at low levels of horizontal utilization of the top grazing stratum but DDM intake started to decline sharply when this stratum was removed in 0·92 of paddock area (i.e. equivalent to 0·08 of the pasture area remaining un-grazed). It was concluded that the proportion of un-grazed area of the pasture can be used as a grazing management strategy to control forage intake for sugarcane.