The explanatory significance of equilibrium depends on the underlying dynamics. A number of questions of stability and robustness are relevant. Here I investigate these questions with respect to some simple evolutionary models from my book, Evolution of the Social Contract. These models use the replicator dynamics. In each of these models I identify the equilibria and characterize their local dynamic stability properties. In two of the models, I show that one equilibrium is globally asymptotically stable. I then show that the foregoing results are robust over a large class of adaptive dynamics that might be considered as alternatives to the replicator dynamics. I investigate the structural stability properties of the three models. The question of the structural stability of a model of bargaining with correlated encounters raised by D'Arms, Batterman, and Górny (1998) is answered in the affirmative. The other two models are not structurally stable. Modification of a structurally unstable signaling system to allow for correlated encounters results in a structurally stable model.

Arguments about the evolutionary function of phenomenal consciousness are beset by the problem of epiphenomenalism. For if it is not clear whether phenomenal consciousness has a causal role, then it is difficult to begin an argument for the evolutionary role of phenomenal consciousness. We argue that complexity arguments offer a way around this problem. According to evolutionary biology, the structural complexity of a given organ can provide evidence that the organ is an adaptation, even if nothing is known about the causal role of the organ. Evidence from cognitive neuropsychology suggests that phenomenal consciousness is structurally complex in the relevant way, and this provides prima facie evidence that phenomenal consciousness is an adaptation. Furthermore, we argue that the complexity of phenomenal consciousness might also provide clues about the causal role of phenomenal consciousness.

Inevitably, much of this reply will concern points on which I disagree with one or other of the commentators. I should start, therefore, by saying that I am delighted to find that their thinking is in many ways similar to my own, and that a serious attempt is under way to clarify the concept of information in biology.

I compare recent work in the sociology of scientific knowledge with other types of sociological research. On this basis I urge a revival of the sociology of science, offer a tentative agenda, and attempt to show how the questions I raise might be addressed.

Kant's views on the epistemological status of physical science provide an important example of how a philosophical system can be applied to understand the foundation of scientific theories. Michael Friedman has made considerable progress towards elucidating Kant's philosophy of science; in particular, he has argued that Kant viewed Newton's law of universal gravitation as necessary for the possibility of experiencing what Kant called true motion, which is more than the mere relative motion of appearances but is different from Newton's concept of absolute motion. In this context, Friedman has provided an account of how Kant must have viewed Newton's supposed derivation of universal gravitation from Kepler's laws, based on, among other things, Kant's claim that Newton really needed to make extra assumptions in order to derive universal gravitation. In this paper, I argue that Friedman's account is incomplete for three reasons. First, Friedman has overlooked an important aspect of how Newton's third law is applied in the relevant sections of the Principia; as a result, Friedman's account partially misconstrues the relation between the planetary phenomena and the theory of universal gravitation. Second, his account fails to account for Kant's apparent belief that Kepler's laws are only empirically-based rules, even though they seem to be necessary for the derivation of universal gravitation and hence also necessary for Kant's own definition of true motion. Third, Friedman has overlooked some remarks by Kant that indicate that Kant thought the crucial properties of universal gravitation could be known without reference to the empirically determined motions of the planets and hence seemingly without any help from Newton.

Arthur Fine's Natural Ontological Attitude (NOA) is intended to provide an alternative to both realism and antirealism. I argue that the most plausible meaning of “natural” in NOA is “nonphilosophical,” but that Fine comes to NOA through a particular conception of philosophy. I suggest that instead of a natural attitude we should adopt a philosophical attitude. This is one that is self-conscious, pragmatic, pluralistic, and sensitive to context. I conclude that when scientific realism and antirealism are viewed with a philosophical attitude there are still legitimate philosophical questions to address.

This paper considers the implications for the relational-substantival debate of observations of parity nonconservation in weak interactions, a much neglected topic. It is argued that ‘geometric proofs’ of absolute space, first proposed by Kant (1768), fail, but that parity violating laws allow ‘mechanical proofs’, like Newton's laws. Parity violating laws are explained and arguments analogous to those of Newton's Scholium are constructed to show that they require absolute spacetime structure—namely, an orientation—as Newtonian mechanics requires affine structure. Finally, it is considered how standard relationist responses to Newton's argument might respond to the new challenge of parity nonconservation.

This paper points to some problems for the position that D.M. Walsh calls “alternative individualism,” and argues that in defending this view Walsh has omitted an important part of what separates individualists and externalists in psychology. Walsh's example of Hox gene complexes is discussed in detail to show why some sort of externalism about scientific taxonomy more generally is a more plausible view than any extant version of individualism.

This paper explores the relationship between psychology and neurobiology in the context of cognitive science. Are the sciences that constitute cognitive science independent and theoretically autonomous, or is there a necessary interaction between them? I explore Fodor's Multiple Realization Thesis (MRT) which starts with the fact of multiple realization and purports to derive the theoretical autonomy of special sciences (such as psychology) from structural sciences (such as neurobiology). After laying out the MRT, it is shown that, on closer inspection, the argument is either circular or self-undermining—the argument either assumes the very autonomy it seeks to demonstrate or the concluded autonomy is contradicted by the theoretical interdependence invoked by the premises of the argument. Next, I explore a concrete example of multiple realization in the explanation of animal behavior: the convergent evolution of jamming avoidance behaviors in three genera of weakly electric fish. Contrary to the image painted by the MRT, the work on these animals involves a high degree of interaction between the various levels of investigation. The fact that our understanding of electric fish behavior involves functional theories and multiple realization without the kind of disunified science that is supposed to follow from such a situation indicates that the mere fact of multiple realization cannot be the basis for an autonomous psychology.

Protagonists in the so-called Science Wars differ most markedly in their views about the role of values in science and what makes science valuable. Scientists and philosophers of science have traditionally considered the principal aims of science to be explanation and application. Only cognitive values should influence what is taken to be explanatory. Social and political values affect the priority assigned to various scientific problems and the ways in which scientific results are applied. Ethical considerations may be brought to bear on the treatment of human and animal subjects, and the manner in which scientific results are communicated.

Recent critiques of science allege that the content of scientific explanations reflects the dominant ideology and interests of scientists and their patrons. Instead of calling for more value neutrality, some now urge that science take as a principal aim the emancipation of oppressed subcultures. Not only should progressive political values be allowed to set the problems attempted, they also should be used to constrain the types of answers which are pursued. Since scientific knowledge is constructed by us, we should take responsibility for its content.

This paper argues that the project of Emancipationist science is impractical and self-defeating. There is good reason to believe that there would be unresolvable political disputes concerning which kinds of scientific theories are truly emancipiatory. Furthermore, just as placebos cease to work when recognized as such, so would a science known to be constrained by political considerations lose its special epistemic authority.

Obviously we could have failed to be successful scientists. But a serious question lurks beneath the banal one stated in my title. If the results of a scientific investigation are correct, would any investigation of roughly the same subject matter, if successful, at least implicitly contain or imply the same results? Using examples ranging from immunology to high-energy physics, the paper presents the cases for both positive and negative answers. The paper is deliberately non-conclusive, arguing that the question is one of the few serious philosophical issues that divides protagonists in the “science wars.”

Biological knowledge does not fit the image of science that philosophers have developed. Many argue that biology has no laws. Here I criticize standard normative accounts of law and defend an alternative, pragmatic approach. I argue that a multidimensional conceptual framework should replace the standard dichotomous law/accident distinction in order to display important differences in the kinds of causal structure found in nature and the corresponding scientific representations of those structures. To this end I explore the dimensions of stability, strength, and degree of abstraction that characterize the variety of scientific knowledge claims found in biology and other sciences.

In this paper I describe the history of the surreal trajectories problem and argue that in fact it is not a problem for Bohm's theory. More specifically, I argue that one can take the particle trajectories predicted by Bohm's theory to be the actual trajectories that particles follow and that there is no reason to suppose that good particle detectors are somehow fooled in the context of the surreal trajectories experiments. Rather than showing that Bohm's theory predicts the wrong particle trajectories or that it somehow prevents one from making reliable measurements, such experiments ultimately reveal the special role played by position and the fundamental incompatibility between Bohm's theory and relativity. They also provide a striking example of the theory-ladenness of observation.

Evolutionary psychology and social constructionism are widely regarded as fundamentally irreconcilable approaches to the social sciences. Focusing on the study of the emotions, we argue that this appearance is mistaken. Much of what appears to be an empirical disagreement between evolutionary psychologists and social constructionists over the universality or locality of emotional phenomena is actually generated by an implicit philosophical dispute resulting from the adoption of different theories of meaning and reference. We argue that once this philosophical dispute is recognized, it can be set aside. When this is done, it becomes clear that the two approaches to the emotions complement, rather than compete with, one another.

Non-reductive physicalists have made a number of attempts to provide the relation of supervenience between levels of properties with enough bite to analyze interesting cases without at the same time losing the relation's acceptability for the physicalist. I criticize some of these proposals and suggest an alternative supplementation of the supervenience relation by imposing a requirement of robustness which is motivated by the notion of structural stability familiar from dynamical systems theory. Robust supervenience, I argue, captures what the non-reductive physicalist wants from supervenience; most importantly, it provides a natural background for reconstructing the notion of (diachronic) property emergence in a way acceptable to physicalists.

Evolutionary game theoretic accounts of justice attempt to explain our willingness to follow certain principles of justice by appealing to robustness properties possessed by those principles. Skyrms (1996) offers one sketch of how such an account might go for divide-the-dollar, the simplest version of the Nash bargaining game, using the replicator dynamics of Taylor and Jonker (1978). In a recent article, D'Arms et al. (1998) criticize his account and describe a model which, they allege, undermines his theory. I sketch a theory of evolutionary explanations of justice which avoids their methodological criticisms, and develop a spatial model of divide-the-dollar with more robust convergence properties than the models of Skyrms (1996) and D'Arms et al. (1998).

I develop an account of predictive similarity that allows even Antirealists who accept a correspondence conception of truth to answer the Realist demand (recently given sophisticated reformulations by Musgrave and Leplin) to explain the success of particular scientific theories by appeal to some intrinsic feature of those theories (notwithstanding the failure of past efforts by van Fraassen, Fine, and Laudan). I conclude by arguing that we have no reason to find truth a better (i.e., more plausible) explanation of a theory's success than predictive similarity, even of its success in making novel predictions.

Some biochemical systems require multiple, well-matched parts in order to function, and the removal of any of the parts eliminates the function. I have previously labeled such systems “irreducibly complex,” and argued that they are stumbling blocks for Darwinian theory. Instead I proposed that they are best explained as the result of deliberate intelligent design. In a recent article Shanks and Joplin analyze and find wanting the use of irreducible complexity as a marker for intelligent design. Their primary counterexample is the Belousov-Zhabotinsky reaction, a self-organizing system in which competing reaction pathways result in a chemical oscillator. In place of irreducible complexity they offer the idea of “redundant complexity,” meaning that biochemical pathways overlap so that a loss of one or even several components can be accommodated without complete loss of function. Here I note that complexity is a quantitative property, so that conclusions we draw will be affected by how well-matched the components of a system are. I also show that not all biochemical systems are redundant. The origin of non-redundant systems requires a different explanation than redundant ones.

Two decades of critique have sensitized historians and philosophers of science to the inadequacies of conventional dichotomies between theory and practice, thereby prompting the search for new ways of writing about science that are less beholden than the old ways to the epistemological mores of theoretical physics, and more faithful to the actual practices not only of physics but of all the natural sciences. The need for alternative descriptions seems particularly urgent if one is to understand the place of theory (and, in parallel, the role of modeling) in contemporary molecular biology, a science where, until now, no division between theory and experiment has obtained, and where distinctions between representing and intervening, and more generally, between basic and applied science, are daily becoming more blurred.

Indeed, the very division between theory and experiment threatens to slight the extensive and sophisticated theoretical analyses (and even modeling) on which experimental work in contemporary molecular biology so often depends. My aim in this paper is to find a way of talking about theoretical practices in biology that is directly rooted in the mix of conceptual and material work that biologists do. As an example of such theoretical practices, I choose for the focus of my analysis the development of a model for gene regulation out of the experimental work of Eric Davidson and his colleagues at Cal Tech.