Certain taxa are noticeably common within collections, widely distributed, and frequently long-lived. We have examined these dominant genera as compared with rarer genera, with a focus on their temporal histories. Using occurrence data from the Paleobiology Database, we determined which genera belonging to six target groups ranked among the most common within each of 49 temporal bins based on occurrences. The turnover among these dominant taxa from bin to bin was then determined for each of these groups, and all six groups when pooled. Although dominant genera are only a small fraction of all genera, the patterns of turnover mimic those seen in much larger compilations of total biodiversity. We also found that differences in patterns of turnover at the top ranks among the higher taxa reflect previously documented comparison of overall turnover among these classes. Both dominant and nondominant genera exhibit, on average, symmetrical patterns of rise and fall between first and last appearances. Dominant genera rarely begin at high ranks, but nevertheless tend to be more common when they first appear than nondominant genera. Moreover, dominant genera rarely are in the top 20 when they last appear, but still typically occupy more localities than nondominant genera occupy in their last interval. The mechanism(s) that produce dominant genera remain unclear. Nearly half of dominant genera are the type genus of a family or subfamily. This is consistent with a simple model of morphological and phylogenetic diversification and sampling.

Few methods exist that put a posterior probability on the hypothesis that a thing is gone forever given its sighting history. A recently proposed Bayesian method is highly accurate but aggressive, generating many near-zero or near-one probabilities of extinction. Here I explore a Bayesian method called the agnostic equation that makes radically different assumptions and is much more conservative. The method assumes that the overall prior probability of extinction is 50% and that slices of the prior are exponentially distributed across the time series. The conditional probability of the data given survival is based on a simple, long-known combinatorial expression that captures the chance all presences would fall at random before or within the last sighting’s interval (L) given that they could fall anywhere. The same equation is used to compute the conditional probability given extinction at the start of each interval i, that is, the chance that all sightings would fall before or within L given that none could equal or postdate i. The conditional probability is zero for all hypothesized extinction intervals through L. Bayes’s theorem is then used to compute the posterior extinction probability. It is noted that recycling the mean posterior for a population as a prior improves the method’s accuracy. The agnostic equation differs from an earlier, related one, because it explicitly includes a term to represent the hypothesis of survival, and it therefore does not assume that the species has necessarily gone extinct within the sampling window. Simulations demonstrate that the posterior extinction probabilities are highly accurate when considered as a suite but individually indecisive, rarely approaching one. This property is advantageous whenever inferring extinction would have dangerous consequences. The agnostic method is therefore advocated in cases where conservative estimates are desired.

For paleobiologists interested in extinct carnivorous reptiles, publication of Walter Auffenberg's (1981) 13–month field study of the Komodo dragon (Varanus komodoensis), or ora, as he prefers to call it, provides a useful portrait of a reptile as the top predator of a terrestrial community. A great deal of information about the ora's habitat utilization, activity patterns, diet, social behavior, and reproduction is presented.

Recent studies have shown that modes of evolution, namely directional trend, random walk, and stasis, vary across morphologic traits and over the geographic range of a taxon. If so, is it possible that our interpretation of evolutionary modes is actually driven by our selection of traits in a study? In an attempt to answer this question, we have restudied the middle Miocene planktonic foraminifera Fohsella lineage, an iconic example of gradual morphologic evolution. In contrast to previous studies that have focused on the gross morphology as embodied by the edge view of tests, we analyze here multiple phenotypic traits chosen because their biologic and ecologic significance is well understood in living populations. We find that traits in the lineage did not evolve in concert. The timing and geographic pattern of changes in shape, coiling direction, size, and ecology were different. The evolution of this lineage is a mosaic combination of different evolutionary modes for different traits. We suggest that overemphasis on the evolution of some single trait, such as the edge-view outline, from narrow geographic ranges has significantly underestimated the dynamic evolutionary history of this group.

As the most recent time in Earth history when global temperatures were warmer than at present, the peak of the last interglacial (Marine Isotope Substage [MIS] 5e; ~120,000 years ago) can serve as a pre-anthropogenic baseline for a warmer near-future world. Here we use a new compilation of 22 fossil localities in California that have been reliably dated to MIS 5e to establish baseline expectations for contemporary bivalve species movements by identifying and analyzing bivalve species with “extralimital” ranges, that is, species that occupied the California region during MIS 5e but are now restricted to adjacent regions. We find that 15% of species (n = 142) found in MIS 5e localities have extralimital ranges and currently occupy warmer waters to the south of the California region. The majority of extralimital occurrences occur in paleo-embayments, suggesting that these sheltered habitats were more suitable habitats for warm-water species than exposed coasts during the MIS 5e. We further find that extralimital species now tend to occur in cooler, more seasonally productive coastal waters and to occupy more offshore islands when compared with the broader species pool immediately south of California. These findings suggest that high dispersal potential and preexisting tolerances to environmental conditions similar to California's comparatively cool and seasonally productive environments may have enabled extralimital bivalves to colonize the California region during MIS 5e.

Fossil bones were once living tissues that demanded internal blood perfusion in proportion to their metabolic requirements. Metabolic rates were primarily associated with bone growth (modeling) in the juvenile stages and with alteration and repair of existing bone affected by weight bearing and locomotion (remodeling) in later stages. This study estimates blood flow rates to the tibia shafts of the Late Cretaceous hadrosaurid Maiasaura peeblesorum, based on the size of the primary nutrient foramina in fossil bones. Foramen size quantitatively reflects arterial size and hence blood flow rate. The results showed that the bone metabolic intensity of juveniles (ca. 1 year old) was greater than fourfold higher than that of 6- to 11-year-old adults. This difference is much greater than expected from standard metabolic scaling and is interpreted as a shift from the high metabolic demands for primary bone modeling in the rapidly growing juveniles to a lower metabolic demand of adults to remodel their bones for repair of microfractures accumulated during locomotion and weight bearing. Large nutrient foramina of adults indicate a high level of cursorial locomotion characteristic of tachymetabolic endotherms. The practical value of these results is that juvenile and adult stages should be treated separately in interspecific analyses of bone perfusion in relation to body mass.

Camelids (Camelidae) were a diverse and widely distributed group in South America during the Pleistocene. According to the fossil record, three species inhabited southern Brazil in the recent past: Hemiauchenia paradoxa, Lama guanicoe, and Vicugna vicugna. The analysis of carbon and oxygen stable isotope ratios in bioapatite provides insight into the paleobiology of nonliving animals and the environment they used to inhabit. We applied this tool to investigate the diet of camelids from two geological localities in southern Brazil: Touro Passo and Santa Vitória Formations (H. paradoxa, n = 7; L. guanicoe, n = 6; V. vicugna, n = 4). Carbon stable isotopes from enamel, dentin, and bone indicated that H. paradoxa and L. guanicoe had diets comprising mostly C3 grasses, but the latter showed a broader diet due to one individual with a mixed diet, whereas V. vicugna had a mixed C3–C4 diet. These different foraging behaviors may have minimized interspecific competition and favored niche partitioning and the coexistence of related species. Combined oxygen and carbon isotope data showed a consistent diet according to climate, probably due to the greater availability in glacial periods of cool-season grasses, which mainly use the C3 photosynthetic pathway. Given their adaptations to grazing, the climate amelioration, followed by the loss of grasslands, likely had a great impact on camelid populations, leading to their extinction in southern Brazil. These results, therefore, contribute to the understanding of the dynamics of paleocommunities in this region.

With Jack Sepkoski's sudden death from heart failure on May 1, 1999, paleontology lost one of its most important figures. In his 25–year career, Jack published more than 70 research articles, 15 of them in this journal, and an equal number of reviews, commentaries, and abstracts. He co-edited Paleobiology (1983–86), received the Schuchert Award (1983), and served as President of the Paleontological Society (1995–96). In 1997, he was elected to the Polish Academy of Sciences and in the same year received the Medal of the University of Helsinki. Further recognition would surely have followed but for his untimely death.

Ecophenotypic variation in populations is driven by differences in environmental variables. In marine environments, ecophenotypic variation may be caused by differences in hydrodynamic conditions, substrate type, water depth, temperature, salinity, oxygen concentration, and habitat heterogeneity, among others. Instances of ecophenotypic variation in modern and fossil settings are common, but little is known about the influences of time averaging and spatial averaging on their preservation. Here we examine the shell morphology of two adjacent populations, both live collected and death assemblages, of the infaunal, suspension-feeding, intertidal bivalve Leukoma staminea from the well-studied Argyle Creek and Argyle Lagoon locations on San Juan Island, Washington. Individuals in the low-energy lagoon are free to burrow in the fine-grained substrate, while clams in the high-energy creek are precluded from burrowing in the rocky channel. Our results demonstrate variation in size and shape between the adjacent habitats. Lagoon clams are larger, more disk-shaped, and have relatively larger siphons than their creek counterparts, which are smaller, more spherical in shape, and have a relatively shallower pallial sinus. This ecophenotypy is preserved among death assemblages, although with generally greater variation due to time averaging and shell transport. Our interpretation is that ecophenotypic variation, in this case, is induced by differing hydrodynamic regimes and substrate types, cumulatively resulting in physiological trade-offs diverting resources from feeding and respiration to stability and shell strength, all of which have the potential to be preserved in the fossil record.

The Late Triassic conodont species Mockina ex gr. carinata and Mockina ex gr. englandi were exceptionally prevalent among the marine fauna of the Panthalassan realm from the middle Norian through to the Rhaetian. Leading into the complete extinction of conodonts near the Triassic/Jurassic boundary, a significant turnover event occurred in conodont fauna across the Norian/Rhaetian boundary (NRB), with the pectiniform elements of common Rhaetian genera from Tethys exhibiting minimal or absent platforms. This intergeneric trend of platform reduction is not as evident in Panthalassa, where these genera are very rare, but morphometric analyses of M. ex gr. carinata and M. ex gr. englandi specimens from across the Canadian Cordillera demonstrate that comparable shifts in morphology occurred intraspecifically in Panthalassa across the NRB, confirming the global extent of these trends. Pectiniform elements of M. ex gr. carinata display a sequential reduction of platform width from the middle Norian to late Norian to Rhaetian, whereas pectiniform elements of M. ex gr. englandi display a reduction of platform width only from the late Norian to Rhaetian. Specimens of both species that have a mid-platform length to breadth ratio greater than 3:1 are restricted to the Rhaetian. Specimens from the Kennecott Point section on Haida Gwaii, British Columbia, demonstrate that this morphological shift occurred somewhat later than other biostratigraphic proxies for the NRB. The global trend of platform width reduction in many conodont pectiniform elements may reflect a change in primary diet away from hard food sources, perhaps suggesting some degree of carbonate biomineralization suppression beginning around the NRB. This interpretation would support CO2 outgassing as the causal mechanism of the environmental disturbance at the NRB and identify the NRB as a significant turning point for Late Triassic ecosystems, marking the beginning of a protracted, multiphase end-Triassic mass extinction.

With 14 species recorded, the Miocene La Venta bat fauna is the most diverse bat paleocommunity in South America. It includes the oldest plant-visiting bat in the New World and some of the earliest representatives of the extant families Phyllostomidae, Thyropteridae, and Noctilionidae. La Venta's Notonycteris magdalenensis is an extinct member of the subfamily Phyllostominae, a group of modern Neotropical animalivorous bats, and is commonly included in studies of the evolution of Neotropical bats, but aspects of its biology remain unclear. In this study, we used multivariate dental topography analysis (DTA) to reconstruct the diet of N. magdalenensis by quantitatively comparing measures of molar complexity with those of 25 modern noctilionoid species representing all major dietary habits in bats. We found clear differences in molar complexity between dietary guilds, indicating that DTA is potentially an informative tool to study bat ecomorphology. Our results suggest N. magdalenensis was probably an omnivore or insectivore, rather than a carnivore like its modern relatives Chrotopterus auritus and Vampyrum spectrum. Also, we reconstructed the body mass of N. magdalenensis to be ~95 g, larger than most insectivorous bats, but smaller than the largest carnivorous bat (V. spectrum). Our results confirm that N. magdalenensis was not a specialized carnivore. It remains to be demonstrated that the specialized carnivory ecological niche was occupied by the same lineage of phyllostomines from at least the middle Miocene. Combining our diet and body-mass reconstructions, we suggest that N. magdalenensis exhibits morphological pre-adaptations crucial for the evolution of specialized carnivory.

Conodont elements have high rates of morphological evolution, but the drivers of this disparity are debated. Positive allometric relationships between dimensions of food-processing surfaces and entire P1 elements have been used to argue that these elements performed mechanical digestion. If involved in food processing, the surface of the element should grow at a rate proportional to the increase in energy requirements of the animal. This inference of function relies on the assumption that the energy requirements of the animal grew faster (≅ mass0.75) than the tooth area (≅ mass0.67). We reevaluate this assumption based on metabolic rates across animals and calculate the allometry in platform-bearing P1 elements of Late Triassic co-occurring taxa, Metapolygnathus communisti and Epigondolella rigoi, using 3D models of ontogenetic series. Positive allometry is found in platform and element dimensions in both species, supporting a grasping-tooth hypothesis, based on the assumption that metabolic rate in conodonts scaled with body mass similarly to that in fish and ectotherms. We also calculate the curvature of the P1 platform surface using the Dirichlet normal energy (DNE) as a proxy for diet. DNE values increase with body mass, supporting the assumption that conodont metabolic rates increased faster than mass0.67. We finally find that adults in both taxa differ in their food bases, which supports trophic diversification as an important driver of the remarkable disparity of conodont elements.

The frequency of biotic invasions in modern ecosystems is increasing due to global trade moving taxa outside their native ranges and climate change facilitating establishment of taxa in previously inhospitable regions. Thus, developing a holistic understanding of biotic invasions and how they impact ecosystems over different timescales—from annual to geologic timescales—is vital. Herein we examine a geologically brief invasion event, the Clarksville Phase of the Richmondian Invasion. Prior analyses have established general ecological and evolutionary patterns across the entire Richmondian Invasion, but recent sequence stratigraphic refinement makes analysis of individual invasion pulses possible for the first time. We examine biotic change across the Clarksville Phase and identify invasion impacts on diversity, paleocommunity composition, and niche stability. Invader arrival and success was strongly linked to increased propagule pressure facilitated by sea-level changes. Invaders initially colonized deep subtidal environments and then moved offshore facilitated by rapid niche evolution during the invasion interval. Invasive taxa that attained the largest population sizes belonged to previously underutilized ecological guilds. Overall, the introduction of the invasive taxa resulted in increased diversity that was maintained into the postinvasion interval accompanied by a change in community composition in which the invaders became dominant paleocommunity members. Combined, these analyses document a biotic invasion facilitated by climate change that increased local diversity through invaders occupying underutilized ecospace and competition-related niche contraction on millennial timescales. Developing a long-term perspective to accompany shorter-term studies facilitates predicting the long-term impacts of modern invasions and creating better-informed policies and practices.

The flux ratio method is a simple method for estimating the rate of synonymy within a group based on variations over time in the status of species names. Here, we correct an error in this method.

Chemical analyses of fossil plants and their associated sediments are currently providing the paleobotanist with biochemical information relevant to the reconstruction of taxonomic relationships. The isolation and chemical identification of various plant pigments from fossils, such as flavonoids and carotenoids (compounds that give flowers their characteristic colors), steroids, fatty acids, and a host of plant phenolic acids, provide the opportunity to characterize the specific paleophytochemical profiles of fossil species.

Recent analytical advances have permitted quantitative evaluations of evolutionary mode in populations of fossil organisms by providing tests of the null hypothesis that patterns of stratigraphic character variation do not differ from the expectations of a random walk. If the hypothesis can be rejected, then stasis and anagenesis represent alternative evolutionary modes discernable using values of the Hurst estimate. We used this approach to evaluate evolutionary mode in the bryozoan genus Peronopora across 34 characters in eight unbranched, cladistically defined, evolutionary sequences. Eight monophyletic crown species and eight paraphyletic (phenetically distinct) metaspecies constitute 16 species-rank taxa within the genus.

In seven of 15 species-rank transitions that had adequate sample sizes, significant character state changes—both phyletic gradualism and punctuated equilibrium—coincided with speciation events 11% of the time and were limited to more derived, crownward, ancestor-descendant pairs. Each of the 34 measured characters exhibited instances of transpecific stasis or anagenesis. Anagenesis of some characters persisted across unbranched lineages over 13 species (i.e., across 12 speciation events), whereas character stasis continued through unbranched lineages in up to 16 species (i.e., persisted unchanged across all 15 speciation events). Transpecific stasis and anagenesis were recognizable in over one-half of the data set, with stasis being approximately twice as common as anagenesis.

Across all character state transitions, approximately one-half reflect stasis, 30% anagenesis, and 20% could not be differentiated from a random walk. Similarly, across species and metaspecies characterized by a single intraspecific mode, stasis was twice as common as anagenesis and three times more common than undifferentiated random walks. The remaining instances of multiple intraspecific evolutionary modes occurred more commonly within metaspecies than within species. This difference might reflect the more frequent presence of unrecognized cryptic species or subspecies within metaspecies of Peronopora. Instantaneous rates of evolution can be estimated both within and between species of Peronopora for characters displaying anagenesis, potentially providing quantitative insights into evolutionary changes within the lineage.