Numerous methods exist for estimating the true stratigraphic range of a fossil taxon based on the stratigraphic positions of its fossil occurrences. Many of these methods require the assumption of uniform fossil recovery potential—that fossils are equally likely to be found at any point within the taxon's true range. This assumption is unrealistic, because factors such as stratigraphic architecture, sampling effort, and the taxon's abundance and geographic range affect recovery potential. Other methods do not make this assumption, but they instead require a priori quantitative knowledge of recovery potential that may be difficult to obtain. We present a new Bayesian method, the Adaptive Beta method, for estimating the true stratigraphic range of a taxon that works for both uniform and non-uniform recovery potential. In contrast to existing methods, we explicitly estimate recovery potential from the positions of the occurrences themselves, so that a priori knowledge of recovery potential is not required. Using simulated datasets, we compare the performance of our method with existing methods. We show that the Adaptive Beta method performs well in that it achieves or nearly achieves nominal coverage probabilities and provides reasonable point estimates of the true extinction in a variety of situations. We demonstrate the method using a dataset of the Cambrian mollusc Anabarella.

Facets of the Silurian receptaculitid Ischadites barrandei are arranged in circlets about a nucleus. They form a set of spirals, originally eight in number, but increasing by the intercalation of new facets (initiating new spirals) in later circlets. We have simulated the surficial geometry of this alga by assuming, as much evidence indicates, that facets are limited in final size and that new spirals must therefore be intercalated in order to cover the surface with a fully tesselated pattern. We use only five parameters in our simulation: nature of the surface (radius of a sphere), tightness of the spirals (assumed to be logarithmic) and rate of increase in facet width (three parameters of an equation fitted to actual data). The program draws facets in circlets and intercalates new ones whenever the sum of facet diameters is at least a facet less than the circumference of the circlet. By holding all but one parameter constant, we can test the influence of single factors upon the pattern of intercalation. We compare these figures with actual patterns of intercalation for eight specimens. Variation in tightness of the spiral seems to affect the pattern most radically—tight spirals intercalate fewer facets because new circlets stay near the pole of the sphere. The morphology of intercalation supports the interpretation of Rietschel (1969, contra Nitecki, 1972 and Byrnes, 1968) that the nuclear circlets are the oldest part of the plant and that new circlets are generated at the opposite pole. Our simulation represents a basic pattern in nature, not a specific feature of receptaculitids. All structures that fill space with spirals and impose limits upon the size of individual units must add new spirals. Bryozoans subject to similar constraints but growing in a completely different way (peripheral growth in radial rows) display the same final pattern.

As paleontological studies are generally distorted by gaps and biases in the fossil record, it is important to assess its completeness. Here we address the fossil record of Parareptilia, a Permian–Triassic amniote clade, applying two measures of specimen completeness: the skeletal completeness metric (SCM) and the character completeness metric (CCM). The SCM quantifies how much of the skeletal material of a taxon is preserved, whereas the CCM measures the amount of phylogenetic information available. The latter was implemented using two different approaches. In this study, we compare three completeness metrics. Two CCM implementations show a strong correlation with each other, but only the second implementation of the CCM correlates significantly with the SCM, possibly due to character selection in phylogenetic data sets. There is no correlation between diversity of parareptiles and their completeness, implying that the observed fluctuations in diversity are not driven by the completeness of the fossils. The mean completeness of parareptiles through time is consistently high compared with previously studied tetrapod clades, suggesting that most parareptile taxa are based on reasonably complete specimens. Clade-specific differences reveal no link between body size and completeness. However, the analyses confirm the impact of ecology, with aquatic mesosaurids being better preserved than terrestrial taxa.

Shotwell's method of paleoecological reconstruction attempts to define community membership of mammals represented within paleontological assemblages. Analysis of the measure of community membership upon which the method is based (relative skeletal completeness) shows this measure to be a function of sample size. A method for controlling for the effects of sample size upon measures of relative skeletal completeness is needed. A method is suggested which employs ratios of numbers of individuals to numbers of specimens, and a specific correction of Shotwell's method is proposed.

The floral community along South Africa's southwest coast today is dominated by shrubby strandveld, renosterveld, and coastal fynbos vegetation. The grass family (Poaceae), represented primarily by C3 taxa, is scarce by comparison. Nevertheless, grass has a long history along this coast, as indicated by the presence of ∼5-million-year-old C3 grass pollen and phytoliths in sediments at the fossil locality of Langebaanweg E Quarry. Because the pollen and phytoliths of other plant families, including fynbos, have also been found, it has been difficult to determine whether grass was scarce or abundant in this environment. In order to shed light on this issue, I analyzed the dental mesowear of the E Quarry bovids. Results indicate that only one (Simatherium demissum) of seven analyzed species was a grazer. These compare well with the results of a microwear texture analysis, which indicate that none of the seven analyzed species were obligate grazers. These two studies point strongly toward a heavily wooded environment and not one that was dominated by grass. Although a conventional dental microwear analysis did identify three out of seven E Quarry bovid species as grazers (Bed3aN Damalacra, Kobus subdolus, and S. demissum), only S. demissum probably actually was a grazer. I suggest that the grazer signal exhibited by the other two bovid samples indicate that these species were taking advantage of a spike in grass abundance, probably during the winter growth season.

Nautilus pompilius at Fiji lives abundantly to about 600 m depth while the shell implodes between 730–900 m when sunk in a cage. From this, and the average parameters of the septum, its tensile strength is calculated to 110–140 MPa. This is markedly higher than the latest value from direct tensile tests (78 MPa). In recent pressure tests by Saunders and Wehman with dry shells from the Philippines, implosion occurred at pressure equivalents to 310–680 m depth, without significant correlation with septal thickness. We attribute this excessive range and non-correlation to structural damage by postnecrotic processes. The recalculated tensile strength from their original data is 56–137 MPa; the higher values are compatible with our values for septal nacre of Nautilus and Spirula (c. 155 MPa). Septal curvature and thickness in orthocones thus remain useful guides to bathymetry.

In the past twenty years, both knowledge of fossil plants and ways of looking at the paleobotanical record have expanded significantly. Studies of Precambrian microfossils have provided insight on early photoautotrophs, while fundamental changes in perceptions of Silurian and Devonian plant remains have clarified our understanding of the colonization of land, as well as the subsequent evolution of complex stems, leaves, and the seed habit. A recurring question concerns the phylogenetic relationships of gymnosperms: is the gymnospermy found in various living and extinct taxa the result of evolutionary convergence or of common descent? Rapidly accumulating data on the reproductive and developmental biology of Paleozoic seed ferns is reopening debate on this issue. The mystery of angiosperm origins remains “abominable”, but the past two decades of research have seen convincing documentation of the initial radiation and rise to taxonomic and ecological dominance of the flowering plants.

While phylogenetic and systematic botany remain at the core of paleobotanical research, increased attention is being devoted to studies of ontogeny and reproductive biology, paleoecology, taphonomy, paleophytochemistry, paleoclimatology, and paleobiogeography. Studies of evolutionary rates and diversity are in their infancy, but initial results permit an optimistic appraisal of the contributions that paleobotanists can make to evolutionary paleontology.

Ammonites have disparate adult morphologies indicative of diverse ecological niches, but ammonite hatchlings are small (~1 mm diameter), which raises questions about the similarity of egg incubation and hatchling life mode in ammonites. Modern Nautilus is sometimes used as a model organism for understanding ammonites, but despite their outward similarities, the groups are only distantly related. Trends in ammonite diversity and extinction vulnerability in the fossil record contrast starkly with those of nautilids, and embryonic shells from Late Cretaceous ammonites are two orders of magnitude smaller than nautilid embryonic shells. To investigate possible environmental changes experienced by ammonite hatchlings, we used secondary ion mass spectrometry to analyze the oxygen and carbon isotope composition of the embryonic shells and early postembryonic whorls of five juveniles of Hoploscaphites comprimus obtained from a single concretion in the Fox Hills Formation of South Dakota. Co-occurring bivalves and diagenetic calcite were also analyzed to provide a benthic baseline for comparison. The oxygen isotope ratios of embryonic shells are more like those of benthic bivalves, suggesting that ammonite eggs were laid on the bottom. Ammonite shell immediately after hatching has more negative δ18O, suggesting movement to more shallow water that is potentially warmer and/or fresher. After approximately one whorl of postembryonic growth, the values of δ18O become more positive in three of the five individuals, suggesting that these animals transitioned to a more demersal mode of life. Two other individuals transition to even lower δ18O values that could suggest movement to nearshore brackish water. These data suggest that ammonites, like many modern coleoids, may have spawned at different times of the year. Because scaphites were one of the short-term Cretaceous–Paleogene extinction survivors, it is possible that this characteristic allowed them to develop a broader geographic range and, consequently, a greater resistance to extinction.

Despite a global fossil record, Metatheria are now largely restricted to Australasia and South America. Most metatherian paleodiversity studies to date are limited to particular subclades, time intervals, and/or regions, and few consider uneven sampling. Here, we present a comprehensive new data set on metatherian fossil occurrences (Barremian to end Pliocene). These data are analyzed using standard rarefaction and shareholder quorum subsampling (including a new protocol for handling Lagerstätte-like localities).

Global metatherian diversity was lowest during the Cretaceous, and increased sharply in the Paleocene, when the South American record begins. Global and South American diversity rose in the early Eocene then fell in the late Eocene, in contrast to the North American pattern. In the Oligocene, diversity declined in the Americas, but this was more than offset by Oligocene radiations in Australia. Diversity continued to decrease in Laurasia, with final representatives in North America (excluding the later entry of Didelphis virginiana) and Europe in the early Miocene, and Asia in the middle Miocene. Global metatherian diversity appears to have peaked in the early Miocene, especially in Australia. Following a trough in the late Miocene, the Pliocene saw another increase in global diversity. By this time, metatherian biogeographic distribution had essentially contracted to that of today.

Comparison of the raw and sampling-corrected diversity estimates, coupled with evaluation of “coverage” and number of prolific sites, demonstrates that the metatherian fossil record is spatially and temporally extremely patchy. Therefore, assessments of macroevolutionary patterns based on the raw fossil record (as in most previous studies) are inadvisable.

Among the various forms developed by marine colonial filter feeders, erect colonial fans have evolved in representatives of several phyla. Branches are relatively narrow, evenly spaced from one another, proliferate by bifurcation, and in most colonies continue from their point of origin to the distal margin of the colony. Their narrowness and uniform placement is apparently related to filling an area with multiple tentacle bells of similar size. The major architectural problem for such a colonial suspension feeder seems to be construction of a sheet composed of narrow branches such that water may be filtered as it flows through the sheet, between branches.

The simplest form of the filtration sheets is a uniformly expanding wedge, in which new branches originate at regular intervals from the point of origin of the wedge. Variation in rate of addition of new branches results in more complex forms, such as paraboloids, flaring fans, spirals, and highly folded sheets.

Crinoid genera of the subclass Camerata generally dominated Late Silurian through Middle Mississippian pelmatozoan echinoderm assemblages. This dominance reached a peak during the early and middle Mississippian (Kinderhookian-Meramecian), but abruptly ended at the close of the Genevievian Stage (=lowermost Chesterian) in eastern North America. During the Genevievian Stage, crinoids of the subclass Inadunata became taxonomically more diverse but a few camerates, especially Platycrinites and Batocrinus, continued to be numerically dominant in many pelmatozoan assemblages. In eastern North America, platycrinids and batocrinids were reduced drastically near the Genevievian-Gasperian boundary. So obvious is this faunal change that, until recently, the Meramecian-Chesterian Series boundary was recognized as the last occurrence of Platycrinites penicillus. The sudden and drastic decline of numerically dominant platycrinids and batocrinids in eastern North America suggests a mass extinction, but is better interpreted as a range contraction and loss of dominance. Platycrinids, in particular, continued to be significant components of pelmatozoan assemblages in Europe and Asia long after the end of the Genevievian Stage. We infer that this reorganization of pelmatozoan assemblages in eastern North America was a product of predation, siliciclastic tolerance, and current-energy preference, with predation playing a major role. Reorganization resulted in post-Genevievian dominance by (1) cladid crinoids, (2) camerate crinoids that were cladid homeomorphs, and (3) the blastoid Pentremites. Foraminifera, conodonts, corals, brachiopods, bryozoans, and other echinoderm groups were affected little, if any, during this same time.

Understanding the evolution of a Bauplan starts with discriminating phylogenetic signal from adaptation and the latter from exaptation in the observed biodiversity. Whether traits have predated, accompanied, or followed evolution of particular functions is the basic inference to establish the type of explanations required to determine morphological evolution. To accomplish this, we focus in a particular group of vertebrates, the anurans. Frogs and toads have a unique Bauplan among vertebrates, with a set of postcranial features that have been considered adaptations to jumping locomotion since their evolutionary origin. This interpretation is frequently stated but rarely tested in scientific literature. We test this assumption reconstructing the locomotor capabilities of the earliest known salientian, Triadobatrachus massinoti. This extinct taxon exhibits a mosaic of features that have traditionally been considered as representing an intermediate stage in the evolution of the anuran Bauplan, some of which were also linked to jumping skills. We considered T. massinoti in an explicit evolutionary framework by means of multivariate analyses and comparative phylogenetic methods. We used length measurements of major limb bones of 188 extant limbed amphibians (frogs and salamanders) and lizards as a morphological proxy of observed locomotor behavior. Our findings show that limb data correlate with locomotion, regardless of phylogenetic relatedness, and indicate that salamander-like lateral undulatory movements were the main mode of locomotion of T. massinoti. These results contrast with recent hypotheses and indicate that derived postcranial features that T. massinoti shared with anurans might have been later co-opted as exaptations in jumping frogs.

Recent excavations of Ediacaran assemblages have revealed striking bed-to-bed variation in diversity–abundance structure, offering potential insight into the ecology and taphonomy of these poorly understood early Metazoan ecosystems. Here we compare faunal variability in Ediacaran assemblages to that of younger benthic assemblages, both fossil and modern. We decompose the diversity of local assemblages into within-collection (α) and among-collection (β) components and show that β diversity in Ediacaran assemblages is unusually high relative to younger assemblages. Average between-bed ecological dissimilarities in the Phanerozoic fossil record are comparable to within-habitat dissimilarities typically observed over meter to kilometer scales in modern benthic marine habitats, but dissimilarities in Ediacaran assemblages are comparable to those typically observed over 10–100 km scales in modern habitats. We suggest that the unusually variable diversity–abundance structure of Ediacaran assemblages is due both to their preservation as near snapshots of benthic communities and to original ecological differences, in particular the paucity of motile taxa and the near lack of predation and infaunalization.

Survival of North American shelf trilobite families during a mass extinction across the upper boundary of the Upper Cambrian Sunwaptan Stage (=“Ptychaspid Biomere”) cannot be predicted from patterns of turnover among their component species: on the shelf, stratigraphic ranges of species belonging to surviving families do not differ significantly from those of eliminated families. Thus, the sorting of families during the extinctions cannot be explained by simple upward causation from the individual level. However, families that ranged from shelf to slope environments before the extinctions (most of which are pandemic) fared significantly better than those confined to shelf settings (which tend to be endemic to North America), indicating that family survival was influenced by geographic and environmental distribution, a property emergent above the individual level. One factor implicated in clade survival during normal background times, high species richness, did not influence the outcome of mass extinction. The results affirm the importance of a hierarchical approach to the interpretation of macroevolutionary patterns and provide some support to the suggestion that sorting processes operating during mass extinctions differ from those of background times.

After having been very abundant in the Early Maastrichtian Globotruncana gansseri zone, Inoceramus remains disappear from five stratigraphic sections in the Basque region of France and Spain in the lower Abathomphalus mayaroensis zone, ~2.5 m.y. before the Cretaceous–Tertiary boundary. Several lines of evidence demonstrate that these shell fragments are preserved in place and accurately record the pattern of the decline and disappearance of the group. The dominant taphonomic process seems to have been passive disaggregation of the shell as shell proteins decayed. The resulting shell fragments were dispersed only locally by burrowing organisms. Shell fragments decline in abundance over tens of meters of section and there are subtle differences between sections which suggests Inoceramus was eliminated by gradual changes in ecological conditions that affected the basin roughly simultaneously but with some geographic variability.

A phylogeny of Cretaceous Montastraea-like corals was constructed and used to evaluate the importance of differential speciation, selective extinction, and developmental constraints in the evolutionary history of the clade. Colonies assembled from localities across the central and western Tethyan region were subdivided into four stratigraphic levels: (1) Neocomian to lower Albian, (2) upper Albian to Cenomanian, (3) Turonian to Campanian, and (4) Maastrichtian. Ten corallite characters were measured on transverse thin sections of each colony, and analyzed following a three-step procedure: (1) species were recognized using all-inclusive average linkage cluster analyses (UPGMA) and a series of iterative canonical discriminant analyses; (2) species were separated by stratigraphic level and linked between levels by comparative analysis of the resulting discriminant scores; and (3) ancestor-descendant relationships were interpreted within and among adjacent levels using phenetic and cladistic approaches. A composite tree was then examined with respect to biogeography.

The results suggest that a total of 16 species existed during the Cretaceous, only 2 of which extended between stratigraphic levels. Speciation events between levels 1 and 2 were associated with the radiation of “small-corallite” forms from a “large-corallite” form, as its distribution expanded southward into the Tethyan realm. Limited speciation and stasis predominated among species within the clade between levels 2 and 3. Speciation events between levels 3 and 4 were associated with the radiation of predominantly “large-corallite” forms from a “small-corallite” form, as the clade became restricted to the Caribbean. Extinction initially focussed on “small-corallite” forms, but later shifted to “large-corallite” forms. Morphologic change was constrained between two extremes, the lower limit of which involved a minimum corallite diameter possibly set by developmental or ecological constraints, and the upper by limitations to increases in number of septa. The overall net result was that of nonprogressive evolution within the clade.

A biomechanical study of archaeocyathan (phylum Archaeocyatha) skeletal construction was undertaken in order to compare its function with that of poriferans. Flume experiments were conducted on three cylindrical, brass models of regular archaeocyathans. Two of these, the porous-septate and aporous-septate models (i.e., possessing septa either with or without pores), represent an ontogenetic series; regular archaeocyathans (class Regulares) typically exhibit a reduction in septal porosity as they grow and many have aporous septa as adults. The third model is aseptate and represents a morphology that is not found in the fossil record. All models exhibit passive entrainment of flow during flume testing, a phenomenon on which modern sponges depend for suspension feeding. Flow direction through the models is consistent with predictions of the spongiomorph-affinity hypothesis. The three models behave quite differently, however. The aseptate model is least effective at passive entrainment. Although some fluid exits the top of the central cavity (or osculum), a great deal of fluid is entrained out the top of the intervallum and also leaks out the outer wall. Flow induction from the oscula of the septate models is augmented when compared to the aseptate model. The porous-septate model exhibits slight leakage from the outer wall, and a dye-rich plume exits the top of the intervallum. Alternatively, the aporous-septate model exhibits no outer-wall leakage and no entrainment from the intervallum. These differences in flow pattern between the porous- and aporous-septate models suggest a hitherto unknown function for septa. Imperforate septa prohibit the migration of fluid through the intervallum to the low-pressure, downstream side where leakage occurs. The ontogenetic shift in septal porosity, common to many archaeocyathan species, may be a mechanism by which outer-wall leakage is avoided later in life. Archaeocyathans would have encountered progressively higher ambient current velocities as their height increased through growth. Outer-wall leakage is not a problem at low velocities or small sizes, but leakage becomes serious at higher velocities when tall, adult morphologies are attained.

The threespot damselfish, Eupomacentrus planifrons, is an algal-gardener and a major cause of biological disturbance on modern Caribbean coral reefs. The hermatypic coral Acropora cervicornis produces characteristic gall-like growths called “chimneys,” in response to damage by the threespot. Chimneys have been discovered on coral fragments excavated from the Jamaican Falmouth Formation, an Upper Pleistocene reef assemblage. This indicates that algal gardening, and thus biological disturbance, has been an integral aspect of Caribbean coral reefs since at least the last sea-level stand, some 125,000 yr BP.

Probabilistic approaches to phylogenetic inference have recently gained traction in paleontological studies. Because they directly model processes of evolutionary change, probabilistic methods facilitate a deeper assessment of variability in evolutionary patterns by weighing evidence for competing models. Although phylogenetic methods used in paleontological studies have generally assumed that evolution proceeds by splitting cladogenesis, extensions to previous models help explore the potential for morphological and temporal data to provide differential support for contrasting modes of evolutionary divergence. Recent methodological developments have integrated ancestral relationships into probabilistic phylogenetic methods. These new approaches rely on parameter-rich models and sophisticated inferential methods, potentially obscuring the respective contributions of data and models. In this study, we describe a simple likelihoodist approach that combines probabilistic models of morphological evolution and fossil preservation to reconstruct both cladogenetic and anagenetic relationships. By applying this approach to a data set of fossil hominins, we demonstrate the capability of existing models to unveil evidence for anagenesis presented by morphological and temporal data. This evidence was previously recognized by qualitative assessments, but largely ignored by quantitative phylogenetic analyses. For example, we find support for directly ancestral relationships in multiple lineages: Sahelanthropus is ancestral to later hominins; Australopithecus anamensis is ancestral to Australopithecus afarensis; Australopithecus garhi is ancestral to Homo; Homo antecessor is ancestral to Homo heidelbergensis, which in turn is ancestral to both Homo sapiens and Homo neanderthalensis. By accommodating direct ancestry in phylogenetics, quantitative results align more closely with previous qualitative expectations.