Earliest Paleocene megafloras from North America are hypothesized to be low diversity and dominated by long-lived cosmopolitan species following the Cretaceous/Paleogene (K/Pg) mass extinction. However, megafloras used to develop this hypothesis are from the Northern Great Plains (NGP) of North America, and relatively little is known about floras from southern basins. Here, we present a quantitative analysis of an earliest Paleocene megaflora (<350 kyr after K/Pg boundary) from the Ojo Alamo Sandstone in the San Juan Basin (SJB), New Mexico. The megaflora, comprising 53 morphotypes, was dominated by angiosperms, with accessory taxa composed of pteridophytes, lycophytes, and conifers. Diversity analyses indicate a species-rich, highly uneven, and laterally heterogeneous flora. Paleoclimate estimates using multivariate and univariate methods indicate warm temperatures and relatively high precipitation consistent with a modern tropical seasonal forest.

When compared with contemporaneous floras from the Denver Basin (DB) of Colorado and the Williston Basin (WB) of North Dakota, the SJB flora had significantly higher species richness but lower evenness. Paleoclimate estimates from the SJB were 7–14°C warmer than the estimates for the DB and WB, indicating a shift from a temperate forest in the NGP to a tropical forest in the SJB. These results demonstrate the presence of a latitudinal floral diversity and paleoclimatic gradient during the earliest Paleocene in western North America. We hypothesize that the warm, wet conditions in the earliest Paleocene SJB drove rapid rates of speciation following the K/Pg boundary, resulting in a diverse and heterogeneous flora.

Probabilistic approaches to phylogenetic inference have recently gained traction in paleontological studies. Because they directly model processes of evolutionary change, probabilistic methods facilitate a deeper assessment of variability in evolutionary patterns by weighing evidence for competing models. Although phylogenetic methods used in paleontological studies have generally assumed that evolution proceeds by splitting cladogenesis, extensions to previous models help explore the potential for morphological and temporal data to provide differential support for contrasting modes of evolutionary divergence. Recent methodological developments have integrated ancestral relationships into probabilistic phylogenetic methods. These new approaches rely on parameter-rich models and sophisticated inferential methods, potentially obscuring the respective contributions of data and models. In this study, we describe a simple likelihoodist approach that combines probabilistic models of morphological evolution and fossil preservation to reconstruct both cladogenetic and anagenetic relationships. By applying this approach to a data set of fossil hominins, we demonstrate the capability of existing models to unveil evidence for anagenesis presented by morphological and temporal data. This evidence was previously recognized by qualitative assessments, but largely ignored by quantitative phylogenetic analyses. For example, we find support for directly ancestral relationships in multiple lineages: Sahelanthropus is ancestral to later hominins; Australopithecus anamensis is ancestral to Australopithecus afarensis; Australopithecus garhi is ancestral to Homo; Homo antecessor is ancestral to Homo heidelbergensis, which in turn is ancestral to both Homo sapiens and Homo neanderthalensis. By accommodating direct ancestry in phylogenetics, quantitative results align more closely with previous qualitative expectations.

In this paper we present a method for estimating soil pCO2 in ancient environments using the measured carbon-isotope values of pedogenic carbonates and plant-derived organic matter. The validity of soil pCO2 estimates proves to be highly dependent on the organic δ13C values used in the calculations. Organic matter should be sourced from the same paleosol profiles as sampled carbonates to yield the most reliable estimates of soil pCO2. In order to demonstrate the potential use of soil pCO2 estimates in paleoecological and paleoenvironmental studies, we compare samples from three Upper Jurassic localities. Soil pCO2 estimates, interpreted as a qualitative indicator of primary paleoproductivity, are used to rank the Late Jurassic terrestrial environments represented by the Morrison Formation in western North America, the informally named Lourinhã formation in Western Europe, and the Stanleyville Group in Central Africa. Because modern terrestrial environments show a positive correlation between primary productivity and faunal richness, a similar relationship is expected in ancient ecosystems. When the relative paleoproductivity levels inferred for each study area are compared with estimates of dinosaur generic richness, a positive correlation emerges. Both the Morrison and Lourinhã formations have high inferred productivity levels and high estimated faunal richness. In contrast, the Stanleyville Group appears to have had low primary productivity and low faunal richness. Paleoclimatic data available for each study area indicate that both productivity and faunal richness are positively linked to water availability, as observed in modern terrestrial ecosystems.

Genera by their very nature are expected to be monotypic and geographically and environmentally restricted at their origin, and most genera do not endure past their stage of first appearance. At the same time, those genera that do endure have a capacity to expand greatly in geographic range, environmental breadth, and species richness. Here we ask what it is that allows some genera and not others to survive past their inception. Using occurrence data from the Paleobiology Database, we find that initial geographic range has the strongest effect on survival, followed by environmental breadth, with the effect of species richness weaker on average. The effect of geographic range is strongest if measured as the distances spanned by the occurrences of a genus rather than the number of distinct areas in which a genus lives. We document substantial secular variation in selectivity of early survival. The most striking aspect of this variation is that survival is only weakly selective among genera that first appear during the Mesozoic. By following genera beyond their stage of first appearance, we find that selectivity with respect to all factors becomes systematically stronger as cohorts age and genera become more differentiated in range, breadth, and richness. This may help account for a previously identified statistical effect of genus age on the chances of survival.

The centric diatom Stephanodiscus yellowstonensis Theriot and Stoermer is endemic to Yellowstone Lake, where it can be an important component of the summer phytoplankton assemblage. Its close relative, Stephanodiscus niagarae Ehrenberg, is abundant in nearby lakes and regional reservoirs. We used the stratigraphic record of Yellowstone Lake to investigate the evolution of S. niagarae to S. yellowstonensis and to describe the limnologic and climatic conditions associated with its evolution. A dramatic morphological shift took place between about 13.7 and 10.0 Ka, but morphology remained stable from 10 Ka to the present. Coincident with morphological change in the S. niagarae/S. yellowstonensis complex were changes in the diatom species assemblage, biogenic silica concentrations, sediment lithology, and regional vegetation. These changes suggest an environment that experienced progressive warming following the retreat of continental glaciers. We could not identify a specific selective factor driving evolution. Nevertheless, nonrandom morphological evolution strongly associated with continuous environmental change suggests that directional selection is a reasonable hypothesis to account for evolution of S. yellowstonensis. Protists are presumed to evolve gradually after speciation events because of large population size, high dispersal capacity, and low reproductive barriers. However, published diatom examples and the evolution of S. yellowstonensis suggest that it is premature to generalize about rates of evolution in protists, or at least to include diatoms in this generalization.

Evidence is presented that primitive artiodactyls had a diploid number of 14. The higher diploid numbers of most living artiodactyls are interpreted as resulting from karyotypic fissioning at the times of past adaptive radiations. The fossil record appears to support this contention.

An evolutionary sequence of unusual X chromosome transformations has been deduced from the differences that exist among extant species. From these, and from interrelationships of karyotypes, certain phylogenetic revisions are suggested.

Micropaleontology is a peculiar subject: it is not easily defined, it focuses on geologic problems, and it ignores fundamental paleontologic and evolutionary questions it could best attack. As a result of its historic development, micropaleontology is directed to the solution of stratigraphic, paleoceanographic and paleoclimatologic problems, but it has seldom addressed paleobiologic or evolutionary ideas. It is a tradition rather than a discipline. The term “micropaleontology” and all it signifies should be abandoned, for it obscures natural relationships, attracts people with geologic rather than biologic approaches, isolates its practitioners in a blanket of systematics, biostratigraphies, and terminologies, and, as a result, discourages outsiders with other viewpoints or contributions from utilizing its fine fossil record. The growth of the field has been exponential in people-power and literature but not in the development of fundamentally new ideas. Micropaleontology has therefore contributed little to recent paleobiologic or evolutionary hypotheses, in spite of the possession by the many organisms relegated to it of biological properties and fossil records which have much potential for the generation and testing of such hypotheses. Microfossil studies have served geology powerfully and they should continue in that role, but they should also be used to fulfill their promise in the interpretation of paleobiogeography, paleoecology, morphology, evolutionary processes and the origin of new groups and ground plans.

One of the most enduring evolutionary metaphors is Van Valen's (1973) Red Queen. According to this metaphor, as one species in a community adapts by becoming better able to acquire and defend resources, species with which it interacts are adversely affected. If those other species do not continuously adapt to compensate for this biotically caused deterioration, they will be driven to extinction. Continuous adaptation of all species in a community prevents any single species from gaining a long-term advantage; this amounts to the Red Queen running in place. We have critically examined the assumptions on which the Red Queen metaphor was founded. We argue that the Red Queen embodies three demonstrably false assumptions: (1) evolutionary adaptation is continuous; (2) organisms are important agents of extinction; and (3) evolution is a zero-sum process in which living things divide up an unchanging quantity of resources. Changes in the selective regime need not always elicit adaptation, because most organisms function adequately under many “suboptimal” conditions and often compensate by demonstrating adaptive flexibility. Likewise, ecosystems are organized in such a way that they tend to be robust and capable of absorbing invasions and extinctions, at least up to a point. With a simple evolutionary game involving three species, we show that Red Queen dynamics (continuous adaptation by all interacting species) apply in only a very small minority of possible outcomes. Importantly, cooperation and facilitation among species enable competitors to increase ecosystem productivity and therefore to enlarge the pool and turnover of resources. The Red Queen reigns only under a few unusual circumstances.

656 mandibles and isolated teeth of the bovid Pachytragus solignaci Robinson from two localities in the Miocene Beglia Formation, Gafsa, Tunisia, have been individually aged on the basis of ontogenetic development and state of dental wear. The sample probably represents normal but seasonally restricted mortality. Life table analysis indicates an annual mortality rate of 25–30%, increasing in old animals. Dental dimensions are affected by stabilizing selection which sets in as the tooth comes into function, earlier mortality being nonselective in that respect.

Cheilostome bryozoans that grew as rigidly erect arborescent colonies dominate many bryozoan-rich assemblages of Tertiary age, in which they are found most commonly as small dissociated fragments. The regularity with which branching and branch thickening occur in intact colonies of living species provides a basis for quantitative reconstruction of these growth processes in fossils. We propose models to describe branch thickening, develop methods to extend both thickening and branching models to fossils, investigate the thickening and branching properties of four Paleocene and five Oligocene species and compare the properties of these fossils to those of nine living species.

The properties investigated are largely mutually independent and species specific irrespective of geologic age and have similar numerical ranges among different assemblages of coeval species. Species are evenly distributed across the range of possible morphologies between observed extremes, without obvious gaps. Statistically significant trends through time are identified in gradients of branch thickening, which have implications for the resistance of colonies to mechanical stress, and in angles of bifurcation, that are important in the way growing colonies occupy space.

We explore the relationships among the geographic ranges of genera, the ranges and positions of their constituent species, and the number of species they contain, considering variation among coeval genera and changes within genera over time. Measuring range size as the maximal distance, or extent, between occurrences within a taxon, we find that the range of the most widespread species is a good predictor of the range of the genus, and that the number of species is a better predictor still. This analysis is complicated by a forced correlation: the range of a genus must be at least as large as that of each of its constituent species. We therefore focus on a second measure of range, the mean squared distance, or dispersion, of occurrences from the geographic centroid, which, by analogy to the analysis of variance, allows the total dispersion of a genus to be compared to the mean within-species dispersion and the dispersion among species centroids. We find that among-species dispersion is the principal determinant of genus dispersion. Within-species dispersion also plays a major role. The role of species richness is relatively small. Our results are not artifacts of temporal variation in the geographic breadth of sampled data. The relationship between changes in genus dispersion and changes in within- and among-species dispersion shows a symmetry, being similar in cases when the genus range is expanding and when it is contracting. We also show that genera with greater dispersion have greater extinction resistance, but that within- and among-species dispersion are not demonstrable predictors of survival once the dispersion of the genus is accounted for. Thus it is the range of the genus, rather than how it is attained, that is most relevant to its fate. Species richness is also a clear predictor of survival, beyond its effects on geographic range.

Distributions of brachiopods from low-latitude paleogeographic settings, primarily in the Tethyan Ocean of southern Europe, with additional data from North America allow some observations on the bathymetric distribution of early Mesozoic brachiopod orders. Norian and latest Triassic (Rhaetian) brachiopod biofacies are dominated in shallowest waters by short-looped terebratulids (Terebratulidina) while spire-bearing athyrids (Athyrida) are common components of deeper-water environments in the latest Triassic. In the late Early Jurassic (Pliensbachian), shallow-water brachiopod faunas are dominated by rhynchonellids, short-looped terebratulids are commoner in relatively deeper shelf waters, and spiriferids and long-looped terebratulids (Terebratellidina) are abundant in deeper-water shelf environments.

Following the end-Triassic extinction event there appears to be niche-replacement in deep-water shelf environments of Late Triassic athyrids by spiriferids and long-looped terebratulids in the Early Jurassic. Rhynchonellids appear to have diversified into shallowest water environments; specialized short-looped terebratulids may have occupied deeper-water niches that resulted ultimately in the success of the enigmatic Pygopidae later in the Jurassic and Cretaceous.

A modern Lesser Flamingo (Phoeniconaias minor) assemblage was collected along the shoreline of Lake Emakat, a saline-alkaline lake in northern Tanzania. Taphonomic analysis found the assemblage to be heavily weathered. This is likely due to the bone's heightened exposure to solar radiation and corrosive soil and water chemistries, as is expected to occur in such depositional environments.

Analysis found that deep, wide, longitudinal cracks penetrate the medullar cavities of both weathered and unweathered long bones. The cause and taphonomic consequence of these cracks are addressed here, using data from Lake Emakat and from controlled studies. Results support repeated (episodic) submersion, followed by drying, as the causal mechanism behind these wet-dry cracks. Mineral salt uptake by bone may explain the early appearance and prevalence of these cracks in saline-alkaline lake settings, as compared to other depositional settings.

The rate of weathering and incidence of wet-dry cracking varies significantly across limb elements. This difference correlates to element specific resistance properties to external loading forces. Heavy weathering weakens the structural integrity of bone and can accelerate its fragmentation. This can lead to bird bone loss in nearshore and ephemeral wetland settings, which may then affect resulting skeletal part, diversity, and richness profiles. Heavy weathering can therefore obscure important taphonomic and paleoecological information.

The weathering data collected here are then applied to a fossil bird assemblage from the FLK Complex, (late Pliocene), Olduvai Gorge, in Tanzania. Results provide evidence for the effect of weathering on paleoecological and behavioral interpretations. Weathering should be considered when analyzing fossil bird assemblages.

The evolutionary history of shell geometry of Early Jurassic ammonoids during the Pliensbachian–Toarcian second-order mass extinction is explored at both adult and ontogenetic levels. The ontogenetic approach builds on the concept of allometric space to get insights into the developmental aspects of morphological evolution. Investigation of the deployment of taxa in adult morphospace and allometric space allows the appraisal of the temporal evolution of morphological and allometric disparities. Curves of taxonomic diversity, adult morphological disparity, allometric disparity, and average adult size are contrasted. Results show that during the Pliensbachian–Toarcian interval, ammonoids underwent two successive and drastic declines in taxonomic diversity. Patterns of morphospace and allometric space occupancy suggest nonselective extinction at both morphological and developmental levels. Another measure of allometric disparity suggests the occurrence of two heterochronic trends, a peramorphocline followed by a paedomorphocline, during the Toarcian. These trends are concomitant with changes in average adult size that compensate for the heterochronic effects and explain the striking stability of morphological disparity despite changes in diversity. The results also emphasize the existence of two contrasted evolutionary dynamics in Pliensbachian and Toarcian ammonoids. Methodologically, the allometric disparity approach appears to be a fruitful tool to analyze the rather understudied clade-wide ontogenetic aspects of morphological evolution. Combining multiple approaches to describe clade morphological dynamics leads to a better characterization and understanding of the diversity-disparities relationships and a better distinction of the potential processes driving these macroevolutionary patterns.

Here I test the hypothesis that temporal variation in geographic range size within genera is affected by the expansion and contraction of their preferred environments. Using occurrence data from the Paleobiology Database, I identify genera that have a significant affinity for carbonate or terrigenous clastic depositional environments that transcends the Database's representation of these environments during the stratigraphic range of each genus. These affinity assignments are not a matter of arbitrarily subdividing a continuum in preference; rather, genera form distinct, nonrandom subsets with respect to environmental preference. I tabulate the stage-by-stage transitions in range size within individual genera and the stage-by-stage changes in the extent of each environment. Comparing the two shows that genera with a preference for a given environment are more likely to increase in geographic range, and to show a larger average increase in range, when that environment increases in areal extent, and likewise for decreases in geographic range and environmental area. Similar results obtain for genera with preferences for reefal and non-reef settings. Simulations and subsampling experiments suggest that these results are not artifacts of methodology or sampling bias. Nor are they confined to particular higher taxa. Genera with roughly equal preference for carbonates and clastics do not have substantially broader geographic ranges than those with a distinct affinity, suggesting that, at this scale of analysis, spatial extent of preferred environment outweighs breadth of environmental preference in governing geographic range. These results pertain to changes over actual geologic time within individual genera, not overall average ranges. Recent work has documented a regular expansion and contraction when absolute time is ignored and genera are superimposed to form a composite average. Environmental preference may contribute to this pattern, but its role appears to be minor, limited mainly to the initial expansion and final contraction of relatively short-lived genera.

Subcolony boundaries within Paleozoic bryozoan colonies, not otherwise easily observable, can be located precisely by computer mapping of variables derived from Fourier series. The monticule-centered subcolonies were maintained by morphogenetic gradients that controlled zooecial size and form, zooidal degeneration (producing brown bodies), and the spacing of monticules with respect to each other. These gradients were probably determined by the release of a budding inhibitor from polymorphic zooids within the monticule. In colonies with active monticular budding the morphogenetic gradients represent ontogenetic series, as the zooids that arose in the monticule gradually migrated outward along modified spiral pathways. Polymorphism, including reproductive functions, is probably reflected in the spatial order of zooids away from a monticule. In subcolonies with monticular budding, polymorphs represent different stages in the life history of a single zooid, with gradual transitions in zooecial form between castes.

The structural similarity between monticules and oghurd dunes supports the idea that they also functioned as excurrent water outlets, possibly with reproductive polymorphs clustered near the outflow. The variability of monticular size and spacing in some colonies indicates that hydrodynamic efficiency was compromised by the need for developmental plasticity. The development of active budding within monticules is considered an ecophenotypic response to the external environment, suggesting that all monticules within the Stenolaemata were potential budding sites. Monticules were successful adaptations in bryozoans because they performed a multiplicity of functions. While regulating the morphogenesis of the colony, they simultaneously served the metabolic functions of waste removal, feeding and reproduction.

Bryozoans are colonial animals and this permits the partitioning of their morphologic variability into components of within colony (i.e. within a single genotype) and between colony (i.e. between genotype) variance. These data have been obtained for four species of the endemic deep-sea genus Euginoma for a series of characters. In 8 comparisons, one component of the total variance dominated at the 5% level. Population (between colony) variance contributed significantly to the total variance in 63% of the comparisons (5 of 8); individual (within colony) variance contributed significantly to the total variance in 37% of the comparisons (3 of 8).

Compared to shallow water species, the surprising feature of the deep-sea data is that the between colony component of variance is as high as it is. Possibly in the more stable, deep-sea environment, the genotypic contribution to the variance of each individual colony is expressed to a greater degree than in the more variable, shallow water regime. If so, then analyses of variability in colonial animals may be an independent means of ascertaining stability gradients in the fossil record.

The most abundant and diverse graptolite assemblages are found in offshore, deep-water black shales—the classical “graptolite fades” (deep-water or isograptid biofacies). The mean duration of Ordovician graptolite species confined to the deep-water facies (here referred to as “group 1” species) is 2.19 Myr, significantly shorter than the mean duration of species in the deep-water facies that are also known in sediments of the shallow-water shelf or platform (“group 2” species) −4.42 Myr, indicating a significantly higher extinction probability (p = <0.001). These figures are based on the precise age ranges of species derived from the time-calibrated composite sequence of 1446 Ordovician to early Devonian graptolites, built by the constrained optimization procedure (CONOP) from 256 measured sections worldwide, and exclude the effects of the Hirnantian mass extinction. The difference between groups cuts across families, morphological types, and pandemic/endemic distributions. An environmental influence is strongly suggested, and although both groups were planktonic, they were unlikely to have shared the same habitat in the water column. The new duration measurements therefore are interpreted as favoring a depth-stratification of graptolite habitats in the water column.

Kelps and other fleshy macroalgae—dominant reef-inhabiting organisms in cool seas—may have radiated extensively following late Cenozoic polar cooling, thus triggering a chain of evolutionary change in the trophic ecology of nearshore temperate ecosystems. We explore this hypothesis through an analysis of body size in the abalones (Gastropoda; Haliotidae), a widely distributed group in modern oceans that displays a broad range of body sizes and contains fossil representatives from the late Cretaceous (60–75 Ma). Geographic analysis of maximum shell length in living abalones showed that small-bodied species, while most common in the Tropics, have a cosmopolitan distribution, whereas large-bodied species occur exclusively in cold-water ecosystems dominated by kelps and other macroalgae. The phylogeography of body size evolution in extant abalones was assessed by constructing a molecular phylogeny in a mix of large and small species obtained from different regions of the world. This analysis demonstrates that small body size is the plesiomorphic state and largeness has likely arisen at least twice. Finally, we compiled data on shell length from the fossil record to determine how (slowly or suddenly) and when large body size arose in the abalones. These data indicate that large body size appears suddenly at the Miocene/Pliocene boundary. Our findings support the view that fleshy-algal dominated ecosystems radiated rapidly in the coastal oceans with the onset of the most recent glacial age. We conclude with a discussion of the broader implications of this change.