Tropical rain forests harbour the most diverse plant and animal assemblages known to science, but our understanding of assemblage structure and species interactions is limited. Bats, as the only flying mammals, have the potential to exploit resources from all strata in forest communities. Thus, fruit-eating phyllostomid bats often have been categorized into canopy-, subcanopy- and understorey-foraging species, based largely upon the height at which they were most frequently captured. Here we challenge this classification and use stable carbon isotopes to assess foraging height of bat species at an Amazonian rain-forest site in Ecuador and at a Caribbean lowland rain-forest site in Costa Rica for comparison with data from mist-net captures. The proportion of the heavy stable carbon isotope 13C in relation to the lighter 12C isotope increases in plants from ground level to the canopy (0.12‰ m−1–0.18‰ m−1), and these differences in stable carbon isotope signatures are reflected in the body tissue of phytophagous bats. We used the stable carbon isotope ratio (δ13C) of wing tissue to estimate the foraging heights of 54 phyllostomid species in two Neotropical bat assemblages. Based on stable isotope data, phyllostomid species exploit food resources at all vertical strata of the forest. Capture height was not a reliable predictor of foraging height and suggests that bats most likely use lower strata to commute between foraging sites to avoid predators. Vertical stratification is likely to be a key factor promoting niche partitioning, thus promoting high local species richness in many tropical animal assemblages.

The species composition of vascular epiphytes and phorophytes (trees and lianas) was studied in ten 0.1-ha forest plots distributed over three landscape units (floodplains, swamps and well-drained uplands) in Colombian Amazonia. The aim was to analyse how host-preferences contributed to the patterns in epiphyte assemblages among the landscape units. In the plots 82 species (3310 plants) were holo-epiphytes, 11 species were primary hemi-epiphytes (179 plants) and 61 were secondary hemi-epiphytes (2337 plants). A total of 411 species of tree and liana were recorded as phorophytes. Detrended Correspondence Analysis and Mantel tests showed that the species composition of holo-epiphytes and secondary hemi-epiphytes differed among the landscape units. For both groups the effect of landscape unit on species composition strongly decreased after controlling for the phorophyte composition in the plots. The phorophyte composition significantly explained epiphyte composition and this effect was not removed after accounting for the effect of landscape unit. At the level of individual species, randomization tests yielded only few significant epiphyte–phorophyte associations. For 84% of the epiphyte species the average indicator of patchiness was below 1.5 demonstrating that most epiphyte individuals occurred scattered over different phorophytes. This probably hampered the analyses of host preferences for individual epiphyte species.

Livestock graze Indian forests to varying extents but their impact on wild native ungulates is rarely understood. Negative impacts of sympatric livestock on chital (Axis axis) demography and food availability were assessed and compared in the Gir Forest, India, at different spatio-temporal scales. No difference in average group size (mean ± SE) (7.11 ± 0.8 indiv.) (short-term response), fawn to doe ratio (0.43 ± 0.03) (short- to medium-term response), chital density (44.8 ± 7.1 indiv. km−2) (medium- to long-term response), and rate of population increase (r = 0.07 ± 0.014) (long-term response) was found between areas sympatric and livestock-free at the larger spatial scale of Gir Forest. Instead, chital density was correlated with rainfall (r = 0.92). After controlling for confounding factors of rainfall, vegetation community, terrain and lion density, chital density was 62% higher for livestock-free compared with sympatric areas but other demographic parameters showed no statistical difference. Peak above-ground biomass was greater in livestock-free (3255 ± 209 kg ha−1) compared to sympatric areas (1438 ± 152 kg ha−1), but chital food was more abundant in moderately grazed areas compared to livestock-free areas. Overall, long-term livestock grazing has depressive effects on chital but in the short term habitat productivity and suitability overrides the depressive effects of sympatric livestock.

To clarify the potential influence of different browsers in the same guild on woody vegetation, dietary overlap and separation between elephant, giraffe, kudu, nyala and impala was assessed in Hluhluwe-iMfolozi Park, South Africa. Woody species browsed, browsing heights, plant-parts browsed and browsing versus grazing were recorded over 2 y by direct observation. We obtained 3068 browse records. Niche breadth (Levins' measure) and overlap (Schoener's index) in species browsed and browsing heights were calculated. Annual and seasonal differences in these measurements, plant-part use and browsing versus grazing were assessed. Elephant utilized the largest number (n = 78) of different woody plant species. Overlap in species browsed was lower between elephant and other browsers than amongst the latter. Seasonal rainfall influenced the range of woody plants utilized, niche breadth in terms of species browsed and browsing versus grazing. Marked resource depletion caused elephant, contrary to theoretical predictions, to narrow niche breadth in terms of species browsed. However, resource depletion rarely had a significant effect on interspecific overlap in species browsed or overlap in browsing heights, on actual browsing heights or plant-parts utilized. A small suite (n = 8) of woody species formed the core diet of all guild members, implying the potential for synergistic impacts by guild members on these species and for competition between populations of different guild members.

Coppicing is an important regeneration mechanism in tropical dry forest after disturbance, but little is known about the long-term dynamics and the rate of recovery of the coppice shoots following clearance. This study reports on the growth and dynamics of coppice shoots following experimental cutting in a tropical dry forest in Jamaica. The fate of coppice shoots was tracked on a total of 481 stumps, representing 51 species over 10 y. The number of coppice shoots and the height and dbh of the leading shoots were measured on the tree stumps 14 mo and 10 y after cutting. Coppicing was vigorous for most tree species, but the average number of shoots per stump decreased significantly over the 9 y period, from 25 to 8 shoots per stump. The average height and diameter of the leading shoots after 10 y were 4.5 m and 3.8 cm, respectively, and the average percentage diameter recovered by the shoots varied between 36% and 95% among the species. Coppicing facilitates the long-term persistence of this dry forest, and the rapid growth of coppice shoots contributed to the resilience of most species after cutting.

Two main types of hollow tree are frequently found in savannas: trees with external splits (externally damaged trees), and trees with no or little visible external damage, but with their entire core removed (internally damaged or ‘piped’ trees). As this may affect trunk mechanical resistance and tree survivorship, we studied the incidence of these two types of cavity in relation to two possible causal agents, fire and termites, in a West African savanna. Overall, the proportion of damaged adult trees (height >2 m) reached 36%, and up to 84% for Crossopteryx febrifuga. In this species, almost all (93%) damaged individuals showed signs of digging by fungus-grower and wood-feeder termites. External damage was more frequent in the more fire-prone shrubby savanna, suggesting that while termites are responsible for the piping, fire is responsible for the later opening of the trunk. Trees growing in the more fire-prone savanna tended to reach significantly smaller sizes, both in height and basal diameter, than in the less intensely burnt woody savanna. There was also evidence that piped trees were taller than externally damaged trees. This strongly suggests that fire causes an increased mortality of adult trees through lateral opening of the trunks causing later breakage.

We conducted a study on small-mammal composition, abundance and diversity across altitudinal and vegetational gradients in the Urucum Mountains (from 150 to 1000 m asl) in western Brazil, a complex biogeographic region. Small mammals were collected in 31 sampling units distributed along altitudinal and vegetational gradients (forest and grassland), totalling 18 112 trap-nights for pitfall and 3500 trap-nights for live-trap. Community variation among sampling units was assessed by randomization tests, setting altitude, vegetation, locality and time as factors, and using presence/absence data. Correlation and logistic regression analyses were run for species and diversity along gradients of altitude and vegetation, according to abundance and presence/absence data. Nineteen species (seven marsupial and 12 rodent) and 355 individuals were recorded. The species composition of small mammals differed according to altitude, vegetation type, locality and time. Species diversity varied significantly according to altitude. Species were influenced solely by altitude or vegetation, or by both vegetation and altitude concomitantly. The small-mammal community was divided in two groups according to biogeographic affinities. The grassland group is capable of invading forest habitats. The results are discussed in light of current hypotheses that attempt to explain community variation along altitudinal gradients around the world.

Plant functional types across environmental gradients can be considered as a powerful proxy that reveals vegetation–environment relationships. The objectives of this study were to investigate the response in the relative abundance of plant functional types along altitudinal gradients and to examine the relationship of plant functional types to environmental variables. The study was conducted in the Gughe-Amaro Mountains, in the south-west Ethiopian highlands. We established 74 plots with an area of 400 m2 (20 × 20 m) each along altitudinal ranges between 1000 and 3000 m asl. Data on site environmental conditions and on the abundance of plant functional types were analysed using the constrained linear ordination technique (RDA) in order to identify the relationships between plant functional types and environmental variables. Altitude, soil organic carbon, soil sand fraction and surface stone cover were significantly related to the relative abundance of plant functional types across the gradient. Tussocks and thorns/spines were abundant in lower altitudinal ranges in response to herbivory and drought while rhizomes and rosettes were abundant at higher altitudes in response to the cold. Generally our results show that topographic attributes (altitude and slope) as well as soil organic carbon play an important role in differentiating the relative abundance of plant functional types in the investigated gradient. Thus, considering specific plant functional types would provide a better understanding of the ecological patterns of vegetation and their response to environmental gradients in tropical regions of Africa prone to drought.

To improve our knowledge of the influence of land-use on solute behaviour and export rates in neotropical montane catchments we investigated total organic carbon (TOC), Ca, Mg, Na, K, NO3 and SO4 concentrations during April 2007–May 2008 at different flow conditions and over time in six forested and pasture-dominated headwaters (0.7–76 km2) in Ecuador. NO3 and SO4 concentrations decreased during the study period, with a continual decrease in NO3 and an abrupt decrease in February 2008 for SO4. We attribute this to changing weather regimes connected to a weakening La Niña event. Stream Na concentration decreased in all catchments, and Mg and Ca concentration decreased in all but the forested catchments during storm flow. Under all land-uses TOC increased at high flows. The differences in solute behaviour during storm flow might be attributed to largely shallow subsurface and surface flow paths in pasture streams on the one hand, and a predominant origin of storm flow from the organic layer in the forested streams on the other hand. Nutrient export rates in the forested streams were comparable to the values found in literature for tropical streams. They amounted to 6–8 kg ha−1 y−1 for Ca, 7–8 kg ha−1 y−1 for K, 4–5 kg ha−1 y−1 for Mg, 11–14 kg ha−1 y−1 for Na, 19–22 kg ha−1 y−1 for NO3 (i.e. 4.3–5.0 kg ha−1 y−1 NO3-N) and 17 kg ha−1 y−1 for SO4. Our data contradict the assumption that nutrient export increases with the loss of forest cover. For NO3 we observed a positive correlation of export value and percentage forest cover.

Determination of the factors that rule the preference of birds for certain fruits is fundamental to the understanding of the co-evolution of plants and their dispersers (Alves-Costa & Lopes 2001). Plants might compete for dispersers, and the response of dispersers will differ according to the variety of fruits available in nature (Denslow & Moermond 1982, Herrera 1981). Seed dispersal by birds is directly related to certain features of fruit, including colour, size, shape, abundance, nutritional value, habitat and distance between plants that are fruiting (Alves-Costa & Lopes 2001, Galetti et al. 2003, Levey et al. 1994, Murray et al. 1993). To understand how birds integrate these features in terms of fruit choice is a complex and widely misunderstood problem (Levey et al. 1994).

Secondary forests occupy a growing portion of the tropical landscape mosaic due to regeneration on abandoned pastures and other disturbed sites (Asner et al. 2009). Tropical secondary forests and degraded old-growth forests now account for more than half of the world's tropical forests (Chazdon 2003), and provide critical ecosystem services (Brown & Lugo 1990, Guariguata & Ostertag 2001).

Discontinuity between suitable aquatic and terrestrial habitats forces many amphibian species with aquatic larvae to undertake risky breeding migrations through disturbed environments, potentially contributing to population declines by reducing survival of adults and juveniles (Becker et al. 2007). The north-western region of the state of São Paulo, Brazil, is characterized by fragments of mesophytic semideciduous forest and savanna, surrounded by a matrix of pasture, plantations and urban areas with only 4% of the remaining original vegetation of the state (Ribeiro et al. 2009). Currently, 36 anuran species have been recorded in this region, corresponding to almost 15% of the state's species (Araújo et al. 2009). The anuran species of this region are associated with open environments or are widely distributed in the different Brazilian biomes (Duellman 1999). Silva & Rossa-Feres (2007) showed the importance of forest fragments in this region for 12 anuran species that breed in pools located in a pasture matrix.