The commercial culture of several important species of fish has long been associated with productivity problems generally attributable to fertilisation rates, hatching rates, and embryonic development. Our present knowledge of the molecular processes accompanying fertilisation in fish is scant at best. Here, we examine how new findings about the molecular mechanisms underlying reproduction in other animal groups may help advance our understanding of how egg activation takes place in fish. A better understanding of egg activation in fish is likely to make a highly valuable contribution to future growth of the aquaculture industry.

This study summarizes optimization of techniques for common carp artificial propagation including improvements of activation solution (AS), the process of insemination, and elimination of egg stickiness. The optimum gamete ratio for good fertilization and hatching rate ranged from 8490 to 23672 spermatozoa per egg, when dechlorinated tap water was used. Optimal ratio between eggs (weight in g) and AS (in ml) was defined as 1:1 to 1:2. Different concentrations of AS such as NaCl from 0 to 34 mM (0–68 mOsmol kg–1) did not change fertilization and hatching rates. An AS adopted for carp spermatozoa (45 mM NaCl, 5 mM KCl, 30 mM Tris–HCl, pH 8) was compared with other saline AS; only the 51 mM (102 mOsmol kg–1) NaCl solution decreased fertilization and hatching rate. The AS containing 20 mM Tris–HCl at pH 9 increased fertilization and hatching rates compared to dechlorinated tap water of pH 7 or to AS of pH 6 and 7. Adhesiveness from the eggs was successfully removed by incubation in Alcalase DX (PLN 04715) using two successive steps with different enzyme concentrations. The first step with an enzyme concentration of 2 ml l–1 was applied from 8 to 20 min after fertilization. Later in a second step, the best time for application of alcalase enzyme at a concentration of 20 ml l–1 was for 45 and 60 s at 20 min after fertilization leading to fertilization and hatching rates of 80–87%. The α-Chymotrypsin (EC 3.4.21.1. Merck) was also found effective for elimination of stickiness. Results withα-Chymotrypsin enzyme indicate that the response to success in elimination of stickiness is highly variable mainly due to differences in the environment, quality of water and carp strains.

Experiments were carried out to investigate the effect of five extenders (sucrose, glucose, fructose, KCl and a saline carp sperm extender) and two cryoprotectants (dimethyl-sulfoxide (DMSO) and methanol) on the cryopreservation of common carp sperm. Freezing of sperm using glucose extender and methanol as cryoprotectant resulted in the highest post-thaw motility, fertilization as well as hatching rates (63 ± 9%, 74 ± 15% and 67 ± 17% vs. 87 ± 5%, 84 ± 14% and 69 ± 14% using fresh sperm, respectively). In general, sugar-based extenders combined with methanol as cryoprotectant yielded higher motility, fertilization and hatching rates than ionic extenders in combination with DMSO. The jelly-like agglutination observed after thawing in samples frozen with sugar-based extenders did not reduce fertilization and hatching rates. Frozen–thawed sperm samples were able to successfully fertilize 10 g (8000) eggs.

A 200-kHz split-beam echosounder (BioSonics, DT6000) with a 6° circular-beam transducer was applied in a mangrove channel in Northern Brazil to study the migratory patterns of intertidal fish. Acoustic sampling was conducted horizontally across the channel perpendicular to the tidal current during two lunar cycles in the dry season 2000 and the wet season 2001. The complex acoustic environment of the mangrove channel was characterized by small target sizes (juvenile fish), multiple targets (aggregated fish), high reverberation and background noise levels due to sediment loads, plankton and mangrove litter transport. Dry seasons provided less noisy acoustic conditions resulting in clearer echo data than wet seasons. Neap tide data were less complex than spring tide data. During a tidal cycle, low water provided the clearest acoustic conditions. Mangrove leaves generated fish-like echoes. Analysis of two dry season wax moon cycles revealed fish flux maxima at low water, flood start and high water in the daytime and the night cycle. Night fish fluxes were significantly higher than at daylight. Throughout the tidal cycles, 60% of the fish traveled with the tide and 40% against, suggesting active foraging against the tide to be a major component of fish movements. Resident mangrove fish entered the intertidal creeks at early flood tide, leaving at late ebb tide at fairly shallow-water depths. Estuarine fish required a minimum water depth (about 2 m) for tidal migration. Since time delays during spring tides between immigration of resident and estuarine fish were reduced, foraging time and habitat accessibility would be enhanced and fish catches and fishes’ feeding success would be greater.

Anti-proteinase activity was demonstrated in the seminal plasma of cyprinid fish species (bream, chub, ide, dace, asp, goldfish, roach, common carp) using electrophoretic techniques combined with a detection method based on inhibition of bovine trypsin. We found species-specific protease inhibitors in the seminal plasma of cyprinids. At least three bands of protease inhibitors with different migration rates could be identified by native PAGE. Higher variability was characterized for bands with slower migration rates. Visualization of inhibitors after SDS-PAGE under non-reducing conditions allowed estimation of their molecular weights. Apparent molecular weights were within the range of 51–59 and 47–54 kDa for the bands with slower and moderate migration rates, respectively. The molecular weight of fast migration bands for roach and common carp were estimated to 23 and 30 kDa, respectively. Inhibitors of common carp seminal plasma differed in their affinity toward serine proteases. Three inhibitors in common carp seminal plasma could be visualized using cod and bovine trypsin, but only two inhibitors (of high molecular weight) were recognized with chymotrypsin. There were differences in anti-proteinase activity and seminal plasma protein concentration in relation to the origin of common carp seminal plasma (breeding lines) and time of milt collection (spawning vs. post-spawning season).

A 200 kHz digital echosounder (HTI) with two split-beam transducers was aimed horizontally to monitor the upstream migration activity of fish, from 24 April to 28 June, in Äijälänsalmi channel (mean width 35 m, length 700 m, and maximum depth 5 m) from large mesotrophic Lake Päijänne to small eutrophic Lake Jyväsjärvi. This study was part of a larger project which aims to analyse the movement of commercially unimportant fish species and reduce the abundance of these fish in L. Jyväsjärvi. Catch samples were collected with a trap net located immediately upstream from the acoustic beams. The most common species in the catch were roach (Rutilus rutilus), perch (Perca fluviatilis), bream (Abramis brama), ruffe (Gymnocephalus cernuus), and white bream (Abramis bjoerkna). The upstream migration of fish was correlated with water temperature (r = 0.40) with time lag of 1 d. In spring, L. Jyväsjärvi warmed faster than L. Päijänne, causing spawning migration from L. Päijänne to L. Jyväsjärvi. Clear diurnal rhythm in activity was observed. The migration rate through the channel peaked around dawn and dusk. Catch per unit effort of the trap net suggested that the peak of the spawning migration of different species was separate. Upstream migration was induced by the temperature difference between two lakes, and the activity of the migration was regulated by temperature changes and light rhythm.

Juvenile pelagic fishes are integral members of many coastal river communities. Many of these systems are boldly influenced by variable wind stress and freshwater inputs that can increase heterogeneity in estuarine habitat for fishes. We use mobile sonar surveys within the Neuse River Estuary System, NC, USA to assess the distribution and behavioral patterns of juvenile anchovies, Anchoa spp. 25-65 mm TL, over a broad range of spatial scales in relation to diel and seasonal changes in water quality including stratification, hypoxic events and copepod distribution. Results from our study indicate that episodic stratification-induced hypoxic events can reduce suitable habitat volume for anchovies by more than 50%. Furthermore, our sampling suggests that hypoxia causes spatial separation between plankton and the grazing fishes. Under stratified oxygen conditions, we observe higher densities of copepods in hypoxic bottom water. Finally, we report that reductions in available habitat caused an increase in local densities of fishes and may result in increased competition for resources. These spatially explicit data are critical for developing trophic dynamic models that predict the response of fish communities to natural and anthropogenic impacts on the system.

Fisheries management now extends from the stock to the ecosystem. The foundation for fisheries management on an ecosystem basis must lie in appropriate modelling of the ecosystems. A prerequisite for such models requires data on the two interactive components of the ecosystem: the biotope (physical environment), and the community of living species. In this context, acoustics become essential, as this tool can provide qualitative and quantitative data on various communities of species, and furthermore allows the seldom-attainable study of their interactions. In fact, acoustics allow the monitoring of entire communities, from plankton to large predators, as well as certain aspects of the physical environment, such as substratum characteristics. Acoustics have been used during the last two decades mainly to provide fishery-independent estimates of stocks. The intention of this paper is to promote the use of acoustics for studying marine ecosystems and to encourage the emergence of new generations of ecosystem models. As an example of integrative research based on acoustic data, we will present the approach and the results of a scientific programme (ECOTAP) carried out to study the tuna pelagic ecosystem in French Polynesia. We then discuss the use of acoustics as a tool for ecosystem-based studies and management.

Data from single and multi-frequency active acoustic surveys conducted annually in the vicinity of the South Shetland Islands, Antarctica were re-analyzed using updated procedures for delineating volume backscattering due to Antarctic krill, adjusting for signal contamination due to noise, and compensating for diel vertical migration of krill outside of the acoustic observation window. Intra-and inter-seasonal variations in krill biomass density and dispersion were derived from the re-processed data set for surveys conducted in the austral summers of 1991/1992 through 2001/2002. Estimated biomass density ranged from 1 to 60 g m–2, decreasing from mid-range levels in 1991/1992 to a minimum in 1992/1993–1993/1994, increasing to a peak in 1996/1997–1997/1998, and decreasing again through 2000/2001–2001/2002. Although this variability may be attributed to changes in the spatial distribution of krill relative to the survey area, comparisons with the proportion of juvenile krill in simultaneous net samples suggest that the changes in biomass density are consistent with apparent changes in reproductive success. A truncated Fourier series fit to the biomass density time series is dominated by an 8-year cycle and predicts an increase in krill biomass density in 2002/2003 and 2003/2004. This prediction is supported by an apparent association between cycles in the extent of sea ice cover and per-capita krill recruitment over the last 23 years and indications that ice cover in the winter of 2002 is seasonally early and extensive.

In order to monitor the recovery of vegetation from pollution and the success of re-seeding efforts, acoustic echoes from the sea floor, covered and uncovered by underwater vegetation, were collected in Puck Bay (southern Baltic sea) using a 208 kHz Biosonics DT 4200 scientific echo sounder. The echo envelopes were examined and several of their parameters were recommended for further analysis. The possibility of using these parameters to distinguish between a bare sea floor and underwater meadows was tested. The parameters may be helpful in the identification of the species composition of the meadows and in accurate biomass assessment.

Seagrass beds play an important role in coastal ecosystems as primary producers and providers of habitat and environmental structure. Therefore, mapping seagrass beds is indispensable in the management and conservation of sound littoral ecosystems, and in the development of sustainable fisheries in coastal waters. Multi-beam sonar is often used to map bottom topography. We developed a mapping method to quantify the volume of seagrass using a multi-beam sonar. Seagrass beds were scanned with the multi-beam sonar and quadrat sampled to verify the distribution of seagrasses. We used software to discriminate seagrass signals from echoes to obtain a topographic profile of the bottom without seagrass; this was then subtracted from the topography including the seagrass. We then mapped seagrass distribution, calculated seagrass volume, and estimated biomass using volume and quadrat samples. We applied these methods to map a seagrass bed of Zostera caulescens in Otsuchi Bay, on the Sanriku Coast of Japan, during the growing season of 2001. A transducer was attached to a boat (one gross ton) equipped with a differential-GPS, a motion sensor, and a gyrocompass. The vessel completed a grid survey scanning whole seagrass bed with an area of 115 m × 156 m at bottom depths between 2 and 8 m within about 40 min when traveling at a speed of 1.5 m s–1 (3 knots). The multi-beam sonar was able to visualize three-dimensional seagrass distribution without interpolation and easily to estimate area and volume occupied by the seagrass using hydrography software. The results indicated that Z. caulescens was distributed at bottom depths of 6–7 m with a surface area of 3 628 m2 and a volume of 1 368 m3. The mean biomass of above- and below-ground parts of seagrass were estimated to be 28.6 gDW m–2 (range 26.6–30.9) and 15.9 gDW m–2 (range 14.1–17.7). Our study demonstrated that multi-beam sonar is effective for mapping and quantifying the spatial distribution of seagrass beds, and for visualizing the landscape of the seagrass canopy.

The feeding behaviour of small tuna on the mesopelagic fish Vinciguerria nimbaria was studied in an equatorial area of the Atlantic Ocean (10–20° W, 0–5° N). Acoustic data (from a scientific cruise) and tuna stomach content data (from the tuna purse-seine fishery) were combined. V. nimbaria formed loose schools that occurred in clusters during daytime, and large aggregations during the night. The characteristics of the schools and clusters were analysed. The average length, size and packing density of the day-school were estimated at 48.5 m, 24400 individuals, and 5.8 fish m–3, respectively. The average length of clusters was close to 10 km. The packing density of night-school was estimated at 1.6 fish m–3. The preying of tuna on V. nimbaria was modelled as a stochastic process based on two Poisson processes. Daily rations of tuna were estimated at 3.5% and 7% of the body weight. Taking into account the swimming performance of the prey and the predator, we showed that tuna were able to feed on day-schools in a very short time, whereas feeding during the night by filtering was not competitive. Furthermore, a cluster is able to feed a single tuna school during 2 months, proving the sustainability of the biomass of small tuna in the area by V. nimbaria.

The most important pelagic artisanal fishery of the Colombian Caribbean Sea is the Atlantic thread herring (Opisthonema oglinum) and the associated species scaled herring (Harengula jaguana), round sardinella (Sardinella aurita), and scad (Decapterus punctatus). The largest aggregations of these small pelagics were found in the La Guajira area, where the local oceanography is modulated by seasonal upwelling intensity. We analysed the associations between the distribution of these small pelagic fishes and the environmental variables. A cumulative frequency method and a Monte Carlo randomization were used to detect associations between fish density and environmental variables. The adults of Atlantic thread herring were found in the upwelling area of La Guajira Peninsula and were associated to waters with temperature and salinity values higher than 25.5 and 36.7 °C, respectively. During December, a nursery area was found in the southern portion of the study area and the juveniles of Atlantic thread herring showed preference for temperatures higher than 27.4 °C. Scaled herring was found to be associated with temperatures (>25.7 °C) and salinities (>36.8). Scad and round sardinella were also associated to temperatures and salinities higher than 25 and 36.6 °C. Our results suggest that the dynamics of the upwelling area may influence the spatial distribution and abundance of small pelagics in the Colombian Caribbean Sea.

The Pacific herring Clupea pallasi population in Prince William Sound (PWS), Alaska, is both a valuable commercial resource and an important forage species for marine fish and wildlife. Historically, the herring were managed by a combination of age-structured models and egg deposition estimates. When these methods predicted a large return for spring 1993 that failed to materialize, we began surveying with echointegration–purse seine methods. After a decade of acoustic surveys, we show the new approach yields highly precise biomass estimates, which are consistent with historical measures of the miles of beach spawning. When compared, we show the traditional methods overestimated stock biomass, which resulted in harvest rates approaching 40%. In contrast, the acoustic methods are most likely to underestimate biomass. Since the acoustic estimates can be quickly obtained, we recommend their use to set harvest quotas for the fishery in the spring just prior to harvest. The shift from the traditional preseason to inseason management practices for herring in PWS is consistent with the Precautionary Principle by the fact that protection of the spawning population does not rely on the ability of science to predict how the population is changing. Furthermore, synoptic infrared measurements on our night-time acoustic surveys revealed herring to be the most important winter forage to marine birds and wildlife in PWS, including the endangered Steller sea lion Eumetopias jubatus. Given the importance of forage to marine birds and wildlife in the North Pacific during the extended winter conditions (October–March), the implementation of inseason management for herring using echointegration–purse seine techniques may be the most effective method to restore depressed populations of marine birds and mammals in the North Pacific.

The power of modern research vessels using diesel engines means significant levels of noise may be radiated underwater. At low frequencies a surveying vessel must not cause fish avoidance behaviour when it is using trawl or acoustic assessment methods. All the main mechanisms that form the essential propulsion system are described and discussed in terms of underwater radiated noise. Diesel engines, generators and propulsion motors contribute significantly to the low frequency spectrum and an illustration is given of underwater noise when an unsuitable propulsion system is used. Avoidance behaviour by a herring school is shown due to a noisy vessel, by contrast there is an example of no reaction of herring to a noise-reduced vessel. Propellers are major sources of both low and high frequency noise. The latter should not reduce echo sounder detection range, nor contaminate echo integrator recordings. Underwater noise levels from four vessels with different machinery and propulsion characteristics are seen in relation to ambient noise levels at 18 kHz. Fish detection is examined in relation to sea background noise and vessel self-noise. Calculated detection ranges for fish target strength classes from –30 to –60 dB at 38 kHz are shown for six vessels travelling at 11 knots, based on self-noise measurements. Echo sounder noise levels from several vessels at 120 and 200 kHz are tabulated. Beyond 100 kHz the effect of vessel-radiated noise is usually insignificant; levels up to that frequency are proposed in the International Council for the Exploration of the Sea (ICES) Cooperative Research Report No. 209 of 1995.

The reaction of fish induced by a trawling vessel was measured using the Bergen Acoustic Buoy. It is a free-floating buoy with a split beam echo sounder system. Individual fish trajectories were obtained by target tracking methods, and average swimming velocities as a function of depth and time before and after passage of the vessel was calculated. A measure for the change in behaviour was applied, showing a significant response during and after propeller passage. The change in horizontal displacement speed is significant at all depths, while the change in vertical displacement velocity is significant at all but one layer of depth. The horizontal reaction seems to occur a bit later than the diving reaction. After the main response, a slightly higher mean horizontal displacement speed was observed for the deepest layers. This indicates a change in the fish state after being exposed to the vessel/gear.

In the herring (Clupea harengus), the swim bladder is connected to both the alimentary canal and the anal opening. The anterior duct is used for filling the swim bladder with air. Gas release from the anal opening is often observed when the fish is scared or during ascent and descent. Here, the sounds produced by such a gas release are studied. The fish was kept in a low-pressure chamber. As the ambient pressure was reduced, the gas in the swim bladder expanded and was emitted through the anal opening. Herring sounds were also recorded in a fish trap and in the field. The characteristic sound made by herring during gas release is denoted as the pulsed chirp. This pulsed chirp is 32–133 ms long (N = 11) and consists of a series of 7–50 (N = 11) transient pulses with a continuous reduction of the frequency emphasis (centroid frequency of first pulse 4.1 kHz and of last pulse 3.0 kHz, N = 11). The source level of the chirp is 73 ± 8 dB re 1 μPa rms (root mean square) at 1 m (N = 19). The pulsed chirp is not known to be produced by any other marine animal and may be a good fingerprint for identifying schools of clupeid fish by natural predators, fishery scientists and fishermen. A model for the generation of the pulsed chirp is presented and tested on existing data.

Acoustic surveys of aquatic organisms are notorious for large data sets. Density distribution results from these surveys are traditionally graphed as two-dimensional plots. Increasing information content through wider acoustic frequency ranges or multiple angular perspectives has increased the amount and complexity of acoustic data. As humans are visually oriented, our ability to assimilate and understand information is limited until it is displayed. Computer visualization has extended acoustic data presentation beyond two dimensions but an ongoing challenge is to coherently summarize complex data. Our goal is to develop visualizations that portray frequency- and behavior-dependent backscatter of individual fish within aggregations. Incorporating individual fish behavior illustrates group dynamics and provides insight on the resulting acoustic backscatter. Object-oriented applications are used to visualize fish bodies and swimbladders, predicted Kirchhoff-ray mode (KRM) backscatter amplitudes, and fish swimming trajectories in three spatial dimensions over time. Through the visualization of empirical and simulated data, our goal is to understand how fish anatomy and behavior influence acoustic backscatter and to incorporate this information in acoustic data analyses.

We analysed Baltic Sea pelagic fish (herring and sprat) spatial and temporal distribution, size distribution at different depths and time of the day and diel feeding pattern. In 1995 the study area was investigated by acoustic survey for 3 d, 3, 4 and 11 October, to investigate spatial and temporal distribution of pelagic fish. The area was divided in four different transects forming a survey quadrate of 15 nautical miles of side. The survey quadrate was ensonified each day four times in the 24 h. In 1997 the acoustic survey was conducted in the same area and in the same week of the year to analyse the diel feeding cycle of herring and sprat and their size distribution by depth and time of the day using pelagic trawls. Fish abundance, from 1995 survey, was statistically different among days and survey quadrates. However, from our data it is not clear whether the variation stems from random dispersion or directed movements occurring at the temporal small-scale. Pelagic fish were dispersed during the night at the surface and aggregated during the day at the bottom. They aggregated at dawn and dispersed at dusk at the surface. For herring this distribution pattern coincided with peaks of stomach fullness analysed in the 1997 survey, while sprat seemed to continue feeding during the whole day time. Larger herring were deeper in the water column than smaller individuals. Diel vertical migrations (DVM) of pelagic fish likely mirrored zooplankton diel vertical movements and it was reasonably in response to optimal predation conditions in the sea and possibly intertwined with predation avoidance and bioenergetic optimisation.

A scattering layer consisting mainly of krill (Meganyctiphanes norvegica) was studied with a submersible transducer, to assess the behaviour of individual organisms in situ by means of split-beam target tracking. Individuals were resolved and tracked, but a rapid increase in average swimming speeds with depth suggested that inaccuracies in the angular estimates affected the estimates. Attempts were made to smooth the tracks during post-processing. Smoothed speeds suggested that most (>78%) invertebrates swam at speeds below 12 cm s–1 (mode ~4 cm s–1), with components of speed larger in the horizontal plane than in the vertical.