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Aimed at senior undergraduates and graduate students in science and biomedical engineering, this text explores the architecture of a cell's envelope and internal scaffolding, and the properties of its soft components. The book first discusses the properties of individual flexible polymers, networks and membranes, and then considers simple composite assemblages such as bacteria and synthetic cells. The analysis is performed within a consistent theoretical framework, although readers can navigate from the introductory material to results and biological applications without working through the intervening mathematics. This, together with a glossary of terms and appendices providing quick introductions to chemical nomenclature, cell structure, statistical mechanics and elasticity theory, make the text suitable for readers from a variety of subject backgrounds. Further applications and extensions are handled through problem sets at the end of each chapter and supplementary material available on the Internet.
Specifically tailored to life science students, this textbook explains quantitative aspects of human biophysics with examples drawn from contemporary physiology, genetics and nanobiology. It outlines important physical ideas, equations and examples at the heart of contemporary physiology, along with the organization necessary to understand that knowledge. The wide range of biophysical topics covered include energetics, bond formation and dissociation, diffusion and directed transport, muscle and connective tissue physics, fluid flow, membrane structure, electrical properties and transport, pharmacokinetics and system dynamics and stability. Enabling students to understand the uses of quantitation in modern biology, equations are presented in the context of their application, rather than derivation. They are each directed toward the understanding of a biological principle, with a particular emphasis on human biology. Supplementary resources, including a range of test questions, are available at www.cambridge.org/9781107001442.
Covering the basics of X-rays, CT, PET, nuclear medicine, ultrasound, and MRI, this textbook provides senior undergraduate and beginning graduate students with a broad introduction to medical imaging. Over 130 end-of-chapter exercises are included, in addition to solved example problems, which enable students to master the theory as well as providing them with the tools needed to solve more difficult problems. The basic theory, instrumentation and state-of-the-art techniques and applications are covered, bringing students immediately up-to-date with recent developments, such as combined computed tomography/positron emission tomography, multi-slice CT, four-dimensional ultrasound, and parallel imaging MR technology. Clinical examples provide practical applications of physics and engineering knowledge to medicine. Finally, helpful references to specialised texts, recent review articles, and relevant scientific journals are provided at the end of each chapter, making this an ideal textbook for a one-semester course in medical imaging.
Exploring the mechanical features of biological cells, including their architecture and stability, this textbook is a pedagogical introduction to the interdisciplinary fields of cell mechanics and soft matter physics from both experimental and theoretical perspectives. This second edition has been greatly updated and expanded, with new chapters on complex filaments, the cell division cycle, the mechanisms of control and organization in the cell, and fluctuation phenomena. The textbook is now in full color which enhances the diagrams and allows the inclusion of new microscopy images. With around 280 end-of-chapter exercises exploring further applications, this textbook is ideal for advanced undergraduate and graduate students in physics and biomedical engineering. A website hosted by the author contains extra support material, diagrams and lecture notes, and is available at www.cambridge.org/Boal.
This practical guide to biosimulation provides the hands-on experience needed to devise, design and analyze simulations of biophysical processes for applications in biological and biomedical sciences. Through real-world case studies and worked examples, students will develop and apply basic operations through to advanced concepts, covering a wide range of biophysical topics including chemical kinetics and thermodynamics, transport phenomena, and cellular electrophysiology. Each chapter is built around case studies in a given application area, with simulations of real biological systems developed to analyze and interpret data. Open-ended project-based exercises are provided at the end of each chapter, and with all data and computer codes available online (www.cambridge.org/biosim) students can quickly and easily run, manipulate, explore and expand on the examples inside. This hands-on guide is ideal for use on senior undergraduate/graduate courses and also as a self-study guide for anyone who needs to develop computational models of biological systems.
The science of complex biological networks is transforming research in areas ranging from evolutionary biology to medicine. This is the first book on the subject, providing a comprehensive introduction to complex network science and its biological applications. With contributions from key leaders in both network theory and modern cell biology, this book discusses the network science that is increasingly foundational for systems biology and the quantitative understanding of living systems. It surveys studies in the quantitative structure and dynamics of genetic regulatory networks, molecular networks underlying cellular metabolism, and other fundamental biological processes. The book balances empirical studies and theory to give a unified overview of this interdisciplinary science. It is a key introductory text for graduate students and researchers in physics, biology and biochemistry, and presents ideas and techniques from fields outside the reader's own area of specialization.
This chapter is dedicated to studying and simulating blood pressures and flows in the circulatory system.We have already seen how transport phenomena are central to the operation of biological systems. In the previous chapter we saw how the pumping of the heart is responsible for driving blood flow to transport solutes throughout the body. Here we focus on the mechanics of the heart and circulatory system themselves.
Pumping of the heart and flow of blood throughout the circulatory system represent a critical life-support system in man. Malfunction of the heart and/or the circulatory system is associated with a great number of diseases and pathophysiological conditions. For example, hypertension – chronic systemic high blood pressure – puts stress on the heart that can ultimately lead to its failure. Here we will see that the functioning and malfunctioning of the circulatory system are best understood in terms of mathematical models that capture the key mechanistic underpinnings of its anatomy and physiology.
Our modeling and analysis in this chapter will rely on lumped parameter circuit models, analogous to electrical circuits made up of resistors, capacitors, and inductors. Readers not familiar with simple circuit analysis may choose to review Section 9.7 of the Appendices, which provides a short background on the subject, before undertaking this chapter.
We will begin our study of the circulatory system with an analysis of the main pump responsible for moving blood through the circuit described in Section 3.2 of the previous chapter.
Transport of mass, into, out of, and within biological systems (including single cells, multicellular organisms, and even ecological systems) is fundamental to their operation. The subject of transport phenomena is treated in great depth in classic texts [10], as well as in books focused on biological systems [62]. Here we explore a number of examples that allow us to see how fundamental transport phenomena are accounted for in a wide range of biological systems. Specifically, we develop and apply basic frameworks for simulating transport in the following sorts of systems:
• Well-mixed systems. The defining characteristic of these systems is that they are fluid systems (often aqueous solutions in biological application) with the solutes of interest distributed homogeneously (i.e., well mixed) over the timescales of interest. An example of a well-mixed system is the aquarium studied in the previous chapter. Other examples are chemical reaction systems inside cells or compartments within cells when spatial gradients of the intracellular reactants do not significantly influence the behaviors that are simulated. Models of well-mixed systems (or models that adopt the well-mixed assumption) do not explicitly account for the spatial distribution of the variables simulated. For biochemical systems this means that, at any given time, concentrations are constant throughout a compartment. The kinetics of such systems are typically described by ordinary differential equations, as in the examples of Section 2.1 of this chapter and in Chapter 3.