Drought is a major abiotic stress worldwide limiting chickpea yield drastically. Low heritability and high genotype × environment interactions make the trait-based breeding strategy an unreliable approach. This study was planned to identify the drought-tolerant lines by evaluating yield-based selection indices in a recombinant inbred line (RIL) population derived from an inter-specific cross between drought-tolerant genotype GPF 2 (Cicer arietinum L.) and drought-sensitive accession ILWC 292 (C. reticulatum) at two locations in India (Ludhiana and Faridkot). A total of six yield-based selection indices were calculated and significant variation was observed in the RILs and their parents for yield-based selection indices at both locations. A holistic approach across association analysis and principal component analysis identified drought tolerance index, mean productivity, geometric mean productivity and harmonic mean productivity as key selection indices, which could be used for indirect selection of drought-tolerant lines. Overall, on the basis of these approaches, a total of 15 promising RILs were identified for their use in chickpea breeding programme for developing drought-tolerant cultivars.