Plant domestication represents a major turning point in human history, resulting in the shift from a hunting/gathering/fishing-based economy to food production. Combining the analysis of ground stone tools and dental calculus, the PATH project aims to investigate dynamics of plant consumption, and the knowledge and toolkits involved in their processing.

The Amazon is one of the few independent centres of plant domestication in the world, yet archaeological and ethnographic evidence suggest a relatively recent transition to agriculture there. In order to make sense of this time lag, the authors propose the use of the concept of ‘familiarisation’ instead of ‘domestication’, to explain Amazonian plant management, and the long-term relationship between plants and people in the region. This concept allows them to cast a fresh eye over ancient and contemporary patterns of plant cultivation and management that may be distinct to the ones described for the Old World.

The archaeobotanical evidence for a putative third centre of early agriculture and plant domestication in southern subtropical China, based primarily on use-wear and residue analyses of artefacts from the sites of Zengpiyan, Niulandong and Xincun, is here reviewed. The available data are not diagnostic of early cultivation or plant domestication based on vegetative propagation in this region. The uncertainties raised by this review are not unique to southern China, and reveal a bias against the identification of early cultivation of vegetatively propagated plants in other regions of the world. The authors suggest that by embracing new integrated analytical approaches, including underused methods such as the study of parenchymatous tissue, the investigation of early domestication and cultivation in this region can make significant advances.

Directly dated Cucurbita from archaeological sites near Lake Huron expand the range and human usage of adventive, cultivated wild gourds or squash into the Great Lakes region, USA, by 4000 14C yr BP. The data also show that domesticated C. pepo squash was cultivated there by 3000 14C yr BP. Although milder Hypsithermal climate may have been a contributing factor, squash and gourds expanded northward during the mid-Holocene mainly by human agency and may be the first human-introduced adventive plant in temperate North America. Even after 3000 14C yr BP, when domesticated squash generally replaced wild varieties at northern sites, squash stands were probably informally managed rather than intensively cultivated.

Andean arracacha (Arracacia xanthorrhiza Bancr.) is a valuable but poorly known vegetatively reproduced root crop whose origin is still unresolved. Wild tuberous forms are present in the presumed areas of domestication and have a perennial or monocarpic life history. To elucidate the origin of the cultivated form, we surveyed a molecular analysis with amplified fragment length polymorphisms (AFLPs) in a representative sample of this crop and its wild relatives from Ecuador and Peru, the presumed areas of domestication. Wild species with tuberous and non-tuberous roots were included, as well as the perennial and monocarpic forms of the presumed wild ancestor. While the two wild varieties of A. xanthorrhiza were closest to the cultivars, they were distinguished by AFLPs. Unexpectedly, two clearly distinct groups were formed among the cultivars, one of which was significantly closer to the monocarpic wild form. However, the chloroplast DNA survey revealed greater similarity between all of the cultivars and the wild perennial A. xanthorrhiza. These results combined with the morphological and life history features, confirms the hypothesis that arracacha domestication started from the wild perennial form. We suggest this scenario of domestication followed by an unsuspected introgression in the cultivation, resulting in two cryptic genetic groups, well distinguished at the molecular level. This is an important revelation with implications in genetic resource conservation and breeding standpoints in this promissory crop.

Introduction. Many fruit trees with a hard seed coat exhibit seed dormancy, posing problems for their regeneration. Vitex doniana, an indigenous multipurpose but threatened fruit and vegetable tree that supports the livelihoods of many households in West Africa, is a typical example. Materials and methods. In our research, we evaluated five dormancy-breaking treatments. We tested the effects of sulphuric acid at 95% concentration (T1); 3 d sun-drying + 48 h soaking in tap water (T2); 3 d alternation of 8 h sun-drying + 1 h soaking in tap water (T3); 2 weeks sun-drying with regular watering in the daytime (T4); and physical shock (T5). These treatments were compared with two controls (T0 and Tc), with seeds from two different sources. The germination percentage, mean germination time, time to first germination and time to threshold germination (20%) were compared; the seedling height, diameter and biomass produced were monitored for 15 weeks. We used generalised linear models and correlation tests to compare the effects of the various treatments on germination and seedling growth. Results and discussion. T3 significantly enhanced seed germination in V. doniana (72% after 12 months). T4 best promoted homogeneity in germination (p < 0.01), followed by T3. The best seedling growth was obtained with T4 and T3. Alternation of sun-drying followed by soaking of seeds, a technique with almost no cost, improved seed germination in V. doniana and, in 33 d, just over 1 month, 20% germination can be achieved. Vitex doniana is a fast-growing species (at the nursery stage), in contrast to the common opinion. Conclusion. Our method should be further investigated to assess the adequate soaking and drying length so as to speed up germination and reach homogenous cohorts.

Anthropogenic range expansion and cultural practices have modified the distribution, abundance and genetic diversity of domesticated organisms, thereby altering multitrophic assemblages through space and time. The putative Mesoamerican domestication centre of the common bean, Phaseolus vulgaris L., in Mexico allows investigating the effects of plant domestication on the genetic structure of members of a multitrophic system. The aim of this study was to compare the evolutionary history of Horismenus parasitoids (Hymenoptera: Eulophidae) to those of their bruchid beetle hosts (Coleoptera: Bruchidae) and their domesticated host plant (P. vulgaris), in the context of traditional agriculture in Mexico. We analyzed the population genetic structure of four Horismenus species in Mexico using mitochondrial COI haplotype data. The two most abundant parasitoid species were Horismenus depressus and Horismenus missouriensis. Horismenus missouriensis were infected by Wolbachia endosymbionts and had little to no population differentiation (FST = 0.06). We suspect the mitochondrial history of H. missouriensis to be blurred by Wolbachia, because differentiation among infected vs. non-infected individuals exists (FST = 0.11). Populations of H. depressus were found to be highly differentiated (FST = 0.34), but the genetic structuring could not be explained by tested spatial components. We then compared the genetic structure observed in this parasitoid species to previously published studies on bruchid beetles and their host plants. Despite extensive human-mediated migration and likely population homogenization of its two Acanthoscelides bruchid beetle hosts, H. depressus populations are structured like its host plant, by a recent dispersal from a diverse ancestral gene pool. Distinct evolutionary dynamics may explain inconsistent patterns among trophic levels. Parasitoids likely migrate from wild bean populations and are poorly adapted to bean storage conditions similar to their bruchid beetle hosts. Integrating several trophic levels to the study of evolutionary history has proven to be fruitful in detecting different ecological responses to human-mediated disturbances and host parasite interactions.

Perennial grain crops would address many agricultural problems, including soil erosion, nutrient loss and pesticide contamination. Doubts about the possibility of perennial grain crops rest upon two assumptions: (1) that the relationship between yield and longevity is a fixed function that cannot be influenced by selection, mutation or environmental changes; and (2) that yield and longevity trade off in a bivariate manner to the exclusion of all other traits. These assumptions are consistent with the phenotypic trade-off model, but recent research suggests that a quantitative genetic model is a more appropriate approach to trade-offs. In the quantitative genetic model, environmental and genetic changes can result in increases in two traits simultaneously even when a trade-off, or negative correlation, exists between the two traits. Empirical evidence that the trade-off between perenniality and reproductive allocation is not fixed comes from wild, herbaceous perennials that can produce more than 2000 kg seed ha−1 in the temperate zone, and herbaceous perennial crops that produce on average 8900 kg fruit ha−1 in the tropics. Ecological literature suggests that most perennials produce small amounts of seed relative to their vegetative growth not as a physiological absolute, but rather as a result of natural selection in a stable, competitive environment favoring longevity. By selecting strongly for seed yield in a population of perennial plants, the plant breeder can likely achieve that which is rare in nature—a high seed-yielding perennial plant. The same general methodologies that have allowed annual grain breeders to increase grain yield and push many combinations of negatively correlated traits to levels of expression not seen in nature are available to the perennial grain breeder. Perennial grain breeders are integrating ecological principles and traditional plant breeding methods in their efforts to develop perennial grain wheat (Triticum spp.), sorghum (Sorghum spp.), sunflower (Helianthus spp.), Illinois bundleflower (Desmanthus illinoensis) and rice (Oryza spp.).