To study the physico-chemical activity of lichens on micaceous components of granitic rocks, samples covered by thalli of Parmelia conspersa (Ehrht) Ach. and Aspicilia intermutans (Nyl.) Arn. were collected and examined with Scanning Electron Microscopy (SEM) equipped with a Back Scattered Electron (BSE) detector and an Energy Dispersive Spectroscopy (EDS) microanalytical system. The bio-physical activity of both lichen species leads to a deep alteration of biotite, which results in detachment, separation and exfoliation of biotite plates. Chemically, the bioweathering process of biotite in the lichenmineral contact zone involves considerable depletion of potassium (K) from interlayer positions in biotite and removal of several elements, corresponding to a 9.7% loss in matter. The sequence of the loss of elements is: K+ » Fetot > Ti4+ ≅ Mg2+. There are also some gains in the order: Ca2+ > Na+ » Al3+ > Si4+ attributed to dissolution of co-existing Ca and Na rich minerals. Geochemical mass balance results suggest the transformation of K-rich biotite to scarcely altered biotite interstratified with a biotite-vermiculite intermediate phase in the lichen bioweathered contact zones.

The question of whether clay minerals can be biogenically transformed as a result of lichen activity at the lichen-rock interface remains unresolved. We applied several microscopical and analytical techniques—scanning electron microscopy-back-scattered electron (SEM-BSE), energy dispersive spectroscopy (EDS) and high-resolution transmission electron microscopy (HRTEM)—in an attempt to address this issue. Unaffected granitic biotite and bioweathered material from the granitic biotite and Parmelia conspersa lichen thalli interface were examined using HRTEM after ultrathin sectioning. The n-alkylammonium treatment of ultrathin sections was carried out in order to study the biogenous mineralogical transformation of the biotite. Microsamples proceeding from unaffected biotite zones demonstrated homogenous 10-Å d(001)-value biotite phase. HRTEM images of lattice fringes of samples taken from the lichen-biotite contact zone reveal large areas of both unexpanded (10-A) and randomly and R = 3 distributed expanded (from 14- to 30-Å) layers of phyllosilicates identified as interstratified biotite-vermiculite. Results of artificial biotite weathering (replacement of K by Ca ion) also revealed the biotite-vermiculite phase formation, indicating that K release in biotite is one of the mechanisms responsible for interstratified mineral phase formation. Two parallel processes, physical exfoliation of biotite and inter-layer ionic exchange of K and subsequent vermiculite formation, are the mechanisms for biotite bioweathering induced by lichens.

In the Earth’s lithosphere, fungi are of fundamental importance as decomposer organisms, animal and plant pathogens and symbionts (e.g. lichens and mycorrhizas), being ubiquitous in sub-aerial and subsoil environments. The ability of fungi to interact with minerals, metals, metalloids and organic compounds through biomechanical and biochemical processes, makes them ideally suited as biological weathering agents of rock and building stone. They also play a fundamental role in biogeochemical cycling of nutrients, (e.g. C, N, P and S) and metals (e.g. Na, Mg, Ca, Mn, Fe, Cu, Zn, Co and Ni) essential for the growth of living organisms in the biosphere. In addition they play an integral role in the mobilization and immobilization of non-essential metals (e.g. Cs, Al, Cd, Hg and Pb). Most studies on mineral-microbe interactions and microbial involvement in geological processes have concentrated on bacteria and archaea (Prokaryota): fungi (Eukaryota) have, to a certain extent, been neglected. This article addresses the role of fungi in geomicrobiological processes, emphasizing their deteriorative potential on rock, building stone and mineral surfaces and involvement in the formation of secondary mycogenic minerals. Such roles of fungi are also of importance for the global carbon reservoir and have potential biotechnological applications, e.g. in the bioremediation of xenobiotic-, metal- and/or radionuclide-contaminated soils and wastes, and metal/radionuclide recovery.

Interest in mineral–microbe interaction has grown enormously over recent decades, providing information in a puzzle-like manner which points towards an ever increasingly intimate relationship between the two; a relationship that can be truly termed co-evolution. Clay minerals play a very central role in this co-evolving system. Some 20 years ago, clay scientists looked at clay mineral–microbe studies as a peripheral interest only. Now, can clay scientists think that they understand the formation of clay minerals throughout geological history if they do not include life in their models? The answer is probably no, but we do not yet know the relative weight of biological and inorganic factors involved in driving clay-mineral formation and transformation. Similarly, microbiologists are missing out important information if they do not investigate the influence and modifications that minerals, particularly clay minerals, have on microbial activity and evolution. This review attempts to describe the several points relating clay minerals and microorganisms that have been discovered so far. The information obtained is still very incomplete and many opportunities exist for clay scientists to help to write the real history of the biosphere.