Translating ribosomes can shift reading frame at specific sites
with high efficiency for gene expression purposes. The most
common type of shift to the −1 frame involves a tandem
realignment of two anticodons from pairing with mRNA sequence
of the form X XXY YYZ to XXX YYY Z where the spaces indicate
the reading frame. The predominant −1 shift site of this
type in eubacteria is A AAA AAG. The present work shows that
in Escherichia coli the identity of the 6 nt 3′
of this sequence can be responsible for a 14-fold variation
in frameshift frequency. The first 3′ nucleotide has the
primary effect, with, in order of decreasing efficiency, U >
C > A > G. This effect is independent of other stimulators
of frameshifting. It is detected with other X XXA AAG sequences,
but not with several other heptameric −1 shift sites.
Pairing of E. coli tRNALys with AAG is
especially weak at the third codon position. We propose that
strong stacking of purines 3′ of AAG stabilizes pairing
of tRNALys, diminishing the chance of codon:anticodon
dissociation that is a prerequisite for the realignment involved
in frameshifting.