This study quantified CO2 emissions from tropical peat swamp soils in Brunei Darussalam. At each site, soil was collected from areas of intact and degraded peat and CO2 flux, and total organic content were measured ex situ. Soil organic content (~20–99%) was not significantly different between intact and degraded forest samples. CO2 flux was higher for intact forest samples than degraded forest samples (~1.0 vs. ~0.6 μmol CO2 m−2 s−1, respectively) but did not differ among forest locations. From our laboratory experiments, we estimated a potential emissions of ~10–20 t CO2 ha−1 y−1 which is in the lower range of values reported for other tropical peat swamps. However, our results are likely affected by unmeasured variation in root respiration and the lability of resident carbon. Overall, these findings provide experimental evidence to support that clearance of tropical peat swamp forests can increase CO2 emissions due to faster rates of decomposition.

We developed a passive sampler for time-integrated collection and radiocarbon (14C) analysis of soil respiration, a major flux in the global C cycle. It consists of a permanent access well that controls the CO2 uptake rate and an exchangeable molecular sieve CO2 trap. We tested how access well dimensions and environmental conditions affect collected CO2, and optimized cleaning procedures to minimize 14CO2 memory. We also deployed two generations of the sampler in Arctic tundra for up to two years, collecting CO2 over periods of 3 days–2 months, while monitoring soil temperature, volumetric water content, and CO2 concentration. The sampler collects CO2 at a rate proportional to the length of a silicone tubing inlet (7–26 µg CO2-C day-1·m Si-1). With constant sampler dimensions in the field, CO2 recovery is best explained by soil temperature. We retrieved 0.1–5.3 mg C from the 1st and 0.6–13 mg C from the 2nd generation samplers, equivalent to uptake rates of 2–215 (n=17) and 10–247 µg CO2-C day-1 (n=20), respectively. The method blank is 8 ± 6 µg C (mean ± sd, n=8), with a radiocarbon content (fraction modern) ranging from 0.5875–0.6013 (n=2). The sampler enables more continuous investigations of soil C emission sources and is suitable for Arctic environments.

The variation in CO2 flux from the forest floor is important in understanding the role of mangrove forests as a carbon sink. To clarify the effects of soil temperature and tidal conditions on variation in CO2 flux, sediment–atmosphere CO2 fluxes were measured between June 2012 and May 2013. We used the closed chamber method for two plots, with a 0.5 m difference in elevation (B, high elevation; R-B, low elevation), in a mangrove forest in south-western Japan. CO2 fluxes were highest in the warm season and showed a weak positive correlation with soil temperature in both forests. Estimated monthly CO2 flux showed moderate seasonal variation in accordance with the exposure duration of the soil surface under tidal fluctuation. Additionally, measured CO2 flux and soil temperature were slightly higher in the R-B plot than the B plot, although estimated annual CO2 flux was higher in the B plot than the R-B plot due to different exposure durations. These results suggest that variation in the exposure duration of the forest floor, which changes seasonally and microgeographically, is important in evaluating the annual CO2 flux at a local scale and understanding the role of mangrove ecosystems as regulators of atmospheric CO2.

There is growing interest in monitoring soil biological health to complement the traditional evaluation of soil physical and chemical characteristics in agricultural fields. Activity of soil microorganisms mediates many essential soil processes that affect fertility, and, therefore, essential to the successful adoption of precision agriculture. However, there are technical limitations to cost-effective monitoring of spatial and temporal dynamics of soil biological activity across agricultural landscapes. This paper summarizes three consecutive studies on in situ measurement of soil biological activity. The first study reveals spatial heterogeneity of microbial population growth in three agricultural fields using bio-films. In the second study, microbiological activity was analyzed using a substrate-induced respiration technique. This technique was evaluated through a series of soil toxicity experiments that involved a comparison of fresh and autoclaved soil samples. Finally, the aim of the third study was to develop a portable instrumented system to evaluate carbon dioxide concentrations in soil by extracting air stored within the soil pores. This instrument was tested under various conditions to quantify the effects of soil moisture, compaction and presence of glucose (artificially increased microbial respiration). Optimization of the discussed techniques will allow for detailed mapping of these indices of soil biological health and their interactions with the physical and chemical environment at any specific point in time.

Converting biomass to charcoal produces physical and chemical changes greatly increasing environmental recalcitrance, leading to great interest in the potential of this carbon form as a long-term sequestration strategy for climate change mitigation. Uncertainty remains, however, over the timescale of charcoal’s environmental stability, with estimates varying from decadal to millennial scales. Uncertainty also remains over charcoal’s effect on other aspects of carbon biogeochemical cycling and allied nutrient cycles such as nitrogen. Radiocarbon is a powerful tool to investigate charcoal mineralization due to its sensitivity; here we report the results of a study using 14C-dead charcoal (pMC=0.137±0.002) in organic-rich soil (pMC=99.76±0.46), assessing charcoal degradation over 55 days of incubation. Using this method, we discriminated between decomposition of indigenous soil organic matter (SOM) and charcoal by microorganisms. SOM was the major source of carbon respired from the soil, but there was also a contribution from charcoal carbon mineralization. This contribution was 2.1 and 1.1% on days 27 and 55, respectively. We also observed a negative priming effect due to charcoal additions to soil, where SOM mineralization was repressed by up to 14.1%, presumably arising from physico-chemical interactions between soil and charcoal.

The McMurdo Dry Valleys of Antarctica are a climate-sensitive ecosystem, where future projected climate warming will increase liquid water availability to release soil biology from physical limitations and alter ecosystem processes. For example, many studies have shown that CO2 flux, an important aspect of the carbon cycle, is controlled by temperature and moisture, which often overwhelm biotic contributions in desert ecosystems. However, these studies used either single-point measurements during peak times of biological activity or diel cycles at individual locations. Here, we present diel cycles of CO2 flux from a range of soil moisture conditions and a variety of locations and habitats to determine how diel cycles of CO2 flux vary across gradients of wet-to-dry soil and whether the water source influences the diel cycle of moist soil. Soil temperature, water content and microbial biomass significantly influenced CO2 flux. Soil temperature explained most of the variation. Soil CO2 flux moderately increased with microbial biomass, demonstrating a sometimes small but significant role of biological fluxes. Our results show that over gradients of soil moisture, both geochemical and biological fluxes contribute to soil CO2 flux, and physical factors must be considered when estimating biological CO2 flux in systems with low microbial biomass.

We have investigated how the microbially-driven processes of carbon (C) mineralization (respiration) and nitrogen (N) mineralization/immobilization in a soil from the northern Maritime Antarctic respond to differences in water availability (20% and 80% water-holding capacity) and temperature (5°C and 15°C) in the presence and absence of different organic substrates (2 mg C as either glucose, glycine or tryptone soy broth (TSB) powder (a complex microbial growth medium)) in a controlled laboratory experiment over 175 days. Soil respiration and N mineralization/immobilization in the presence of a C-rich substrate (glucose) increased with increases in water and temperature. These factors were influential individually and had an additive effect when applied together. For the N-rich substrates (glycine and TSB), microbial responses to increased water or temperature alone were weak or not significant, but these factors interacted to give significantly positive increases when applied together. These data indicate that under the expected changes in environmental conditions in the Maritime Antarctic, where temperature and the availability of water and organic substrates will probably increase, soil microbial activity will lead to more rapid C and N cycling and have a positive feedback on these biogeochemical processes, particularly where or when these factors increase concurrently.

Soil CO2 emission is an important part of the terrestrial carbon cycling and is influenced by several factors, such as type and distribution of vegetation. In this work we evaluated the spatial variability of soil CO2 emission in terrestrial ecosystems of maritime Antarctica, under two contrasting vegetation covers: 1) grass areas of Deschampsia antarctica Desv., and 2) moss carpets of Sanionia uncinata (Hedw.) Loeske. Highest mean emission was obtained for the Deschampsia (4.13 μmol m-2 s-1) developed on organic-rich soil with a strong penguin influence. The overall results indicate that soil temperature is not directly related to the spatial pattern of soil CO2 emission at the sites studied. Emission adjusted models were Gaussian and exponential with ranges varying from 1.3 to 2.8 m, depending on the studied site and vegetation cover.

Spatial and seasonal variation in soil respiration rates were investigated in a tropical dry forest in Thailand. The spatial variation was examined at 50 points within a 2-ha plot in the forest floor during the dry and wet seasons. The seasonal and diurnal variations in soil respiration were measured at 16 and 5 points, respectively. The mean soil respiration rate during the wet season was 1041 ± 542 mg CO2 m−2 h−1 (mean ± SD), which is about twice that during the dry season. Soil respiration rate was negatively correlated with soil water content during the wet season. A polynomial equation using seasonal data describes soil respiration and water content: soil respiration rate increased with soil water content, but started to drop when soil water content exceeded 21%. The diurnal variation in soil respiration rate during the wet season was positively correlated with soil temperature, whereas during the wet season it was not correlated with soil temperature. The diurnal variation in soil respiration rate during the dry season showed a midday depression. The estimation of soil carbon flux with polynomial equations should incorporate different functions for the wet and dry seasons in tropical dry forests.

Carbon dioxide emission through soil respiration is an important component of the carbon balance in forest ecosystems. However, little information is available on the rates of soil respiration in mangrove forests. We studied the rate of soil respiration in a secondary mangrove forest in eastern Thailand on an estuary of the Trat River during both the wet and dry seasons. A study site of 40 × 110 m was established and a series of vegetation zones identified: Sonneratia, Avicennia, Rhizophora and Xylocarpus, in order of increasing elevation inland. Soil respiration was measured during low tide, using an infrared gas analyser connected to a respiratory chamber, by excluding the respiration of above-ground roots from the chamber. At least 19 measurements were performed in each zone for each season. The rate of soil respiration significantly increased with increasing soil temperature. The soil temperature which was usually lower than that of sea water showed a trend that decreased with distance from the river in both wet and dry seasons. The relative land elevation causes different periods of inundation among the vegetation zones. The period was longest in the Sonneratia zone located on the river fringe, and became shorter moving inland. Thus, the elevation and relevant period of inundation are considered to be causal factors warming the soil. Consequently, the difference in soil temperature caused significantly different rates of soil respiration among the vegetation zones in the mangrove forest. Overall, the average rate of soil respiration ranged from 0.456 to 0.876 μmol CO2 m−2 s−1, supporting the view that mangrove forests have lower rates of soil respiration than do upland forests.

There is considerable uncertainty about how rates of soil carbon (C) and nitrogen (N) cycling will change as CO2 accumulates in the Earth's atmosphere. We summarized data from 47 published reports on soil C and N cycling under elevated CO2 in an attempt to generalize whether rates will increase, decrease, or not change. Our synthesis centres on changes in soil respiration, microbial respiration, microbial biomass, gross N mineralization, microbial immobilization and net N mineralization, because these pools and processes represent important control points for the below-ground flow of C and N. To determine whether differences in C allocation between plant life forms influence soil C and N cycling in a predictable manner, we summarized responses beneath graminoid, herbaceous and woody plants grown under ambient and elevated atmospheric CO2. The below-ground pools and processes that we summarized are characterized by a high degree of variability (coefficient of variation 80–800%), making generalizations within and between plant life forms difficult. With few exceptions, rates of soil and microbial respiration were more rapid under elevated CO2, indicating that (1) greater plant growth under elevated CO2 enhanced the amount of C entering the soil, and (2) additional substrate was being metabolized by soil microorganisms. However, microbial biomass, gross N mineralization, microbial immobilization and net N mineralization are characterized by large increases and declines under elevated CO2, contributing to a high degree of variability within and between plant life forms. From this analysis we conclude that there are insufficient data to predict how microbial activity and rates of soil C and N cycling will change as the atmospheric CO2 concentration continues to rise. We argue that current gaps in our understanding of fine-root biology limit our ability to predict the response of soil microorganisms to rising atmospheric CO2, and that understanding differences in fine-root longevity and biochemistry between plant species are necessary for developing a predictive model of soil C and N cycling under elevated CO2.

Conventional and organic semidwarf Granny Smith apple production systems were compared during three years of conversion to certified organic management. Because of differences in fruit load with hand thinning compared with chemical thinning, apple tonnage was higher in the organic production system (OPS) in 1989 and 1991. The organic system was higher than the conventional system in number and weight of fruit per tree, but smaller in average fruit size. Using grower-receivedfarmgate premiums of 38% (1990) and 33% (1991) for unsorted, certified organic apples, comparative cost accounting showed greater net return per hectare for the OPS. The OPS required higher material and labor inputs in all years.

Greater terminal growth in the conventional production system (CPS) in 1991 was the only significant difference in growth indicators between systems. N was generally higher in leaf and new wood bark tissues in the CPS. P was generally higher in the leaf and new wood bark tissues in the OPS. No decline in yield was associated with increased weed biomass in the OPS. There was no difference in fruit damage caused by codling moth between production system treatments (codling moth granulosis virus and pheromone-based mating disruption vs. synthetic insecticide). In 1991, secondary lepidopterous pests (apple leafroller and orange tortrix) caused greater fruit scarring in the CPS. In all years, tentiform leafminers caused greater leaf damage in the CPS. Apple leafhopper density and leaf damage were greater in the OPS in 1990 and 1991.

Soil nutrient levels showed few significant changes during conversion to organic management. Soil bulk density and water holding capacity were useful indicators of changes in soil physical characteristics. Potentially mineralizable nitrogen andmicrobial biomass-C were more sensitive indicators of system change than total N or organic C. Two soil biological ratios, the respiratory ratio and biomass-C/total organic-C, were similar in the two production systems. Earthworm biomass and abundance increased in the OPS in the third year. The introduction of Lumbricus terrestris into the OPS greatly increased litter incorporation rates.

The combination of several measures (organic matter accumulated, soil porosity, field soil respiration, CO2 evolved during incubation, and mineral N released) shows clearly that soil biological activity was enhanced in the systems that minimized tillage. Surprisingly, the abundance of earthworms, which are considered very sensitive to damage by tillage, did not always follow the same pattern. We do not know the reason for the response of earthworms, but in part it may have been an artifact of the interaction of the collection technique with soil properties such as infiltration rate and temperature. The most dramatic improvement in porosity, organic matter accumulation and N mineralization ability came from five years' continuous growth of grass sod, underscoring the potential role of grass in sustainable cropping systems and the value of grass for soil conservation and improvement.

In the fifth year of an agricultural conversion experiment in Pennsylvania, we studied the soil biological community under three treatment regimes planted with corn: organic-manure, organic-legume, and a conventional system. The organic treatments consisted of complex crop rotations, cultivations, and organic matter inputs to control pests and maintain soil fertility. The conventional system consisted of a simple corn/soybean rotation with synthetic fertilizer and pesticide inputs. High rates of CO2 evolution (a measure of potential microbial activity) in the organic plots corresponded with high levels of organic matter input. Soil nematodes were most abundant in organic plots, although seasonal patterns differed between the two organic treatments. Soil microarthropods were dominated by fungivorous Prostigmata mites, which reached peak abundance in organic plots two to five months after organic matter incorporation. Oribatid mites, which were rare throughout the study, followed the same pattern of abundance in each treatment and were probably most influenced by tillage disturbances. Predatory Mesostigmata were generally more abundant in organic plots. Surface-dwelling Collembola were abundant briefly in the spring, but soil-dwelling species dominated numerically throughout the cropping season. Spring tillage appeared to have a strong negative effect on earthworm populations in all plots. Small earthworm species became abundant in organic-manure plots during the summer. Larger earthworm species were abundant in organic-legume and conventional plots after the autumn harvest, when crop residues covered the undisturbed soil The systems-level nature of the Conversion Project experiment makes it difficult to identify cause-effect relationships. The data do suggest that organic amendments tend to enhance soil biological activity, while tillage disturbances tend to disrupt the biotic community.