The Antarctic seaspider Pentanymphon antarcticum is a benthic species in the Southern Ocean, but little is known about its pathogen profile. In this study, we provide a draft genome for a new iridovirus species that has been identified using metagenomic techniques. The draft genome totals 157 260 bp and encodes 188 protein-coding genes. The virus shows greatest protein similarity to a ‘carnivorous sponge-associated iridovirus’ from a deep-sea sponge host. This study represents the first discovery of a pycnogonid iridovirus and the first iridovirus from the Antarctic region.

In the tropics, limestone caves in karstic areas are known for their unique biodiversity. However, many caves remain unstudied and little is known about underlying gradients that determine diversity and biomass in aquatic microhabitats. Here, we sampled zooplankton and benthos in a set of 12 aquatic caves, locally called closed cenotes in Yucatán, Mexico. Our aim was to explain diversity patterns and differences in biomass with particular attention for correlations between bat colony characteristics and other biota. Compared with caves that support photosynthesis, diversity was low with an average of four planktonic and two benthic species in these dark caves. Undetectable phosphorus concentrations in the water suggest this nutrient is limiting. Several associations hint at a potential link between bat abundance and functional guild composition, water quality and aquatic biota. As such, more bats were linked to higher nitrate concentrations. Yet this was not translated to higher invertebrate biomass, probably since phosphorus is limiting. Overall, the trends found in this survey suggest that bats could be important as fertilizers of the caves although mechanistic links that mediate the flux of nutrients need to be confirmed experimentally.

The lack of biological knowledge of many invasive species remains as one of the greatest impediments to their management. Here I detail targeted research into the biology of the yellow crazy ant Anoplolepis gracilipes within northern Australia and detail how such knowledge can be used to improve the management outcomes for this species. I quantified nest location and density in three habitats, worker activity over 24 h, infestation expansion rate, seasonal variation of worker abundance and the timing of production of sexuals. Nests were predominantly (up to 68%) located at the bases of large trees, indicating that search efforts should focus around tree bases. Nest density was one nest per 22, 7.1 and 6.3 m2 in the three habitats, respectively. These data form the baselines for quantifying treatment efficacy and set sampling densities for post-treatment assessments. Most (60%) nests were underground, predominantly (89%) occurring in an open area rather than underneath a rock or log. Some seasonality was evident for nests within leaf litter, with most (83%) occurring during the ‘wet season’ (October–March). Of the underground nests, most were shallow, with 44% being less than 10 cm deep, and 67% being less than 20 cm deep. Such nest location and density information serves many management purposes, for improving detection, mapping and post-treatment assessments, and also provided strong evidence that carbohydrate supply was a major driver of A. gracilipes populations. Just over half of the nests (56%) contained queens. Of the 62 underground nests containing queens, most queens (80%) were located at the deepest chamber. When queens were present, most often (38%) only one queen was present, the most being 16. Queen number per nest was the lowest in July and August just prior to the emergence of virgin queens in September, with queen numbers then remaining steadily high until April. Nothing is known for any ant species about how the queen number per nest/colony affects treatment efficacy, but further research would no doubt yield important breakthroughs for treating ants. Activity occurred predominantly nocturnally, ceasing during mid-day. These activity data determined the critical threshold above which work must be conducted to be considered reliable, and also suggests that treatments are best applied in the afternoon. Total brood production peaked in February and was the lowest around August and September. These abundance data form the baselines for quantifying treatment efficacy, and may have implications for treatment efficacy. Males were found every month, predominantly between August and November. Queen pupae were found in September. The reproductive timing of sexuals determines the treatment schedule. Targeted, site-specific research such as that described here should be an integral part of any eradication program for invasive species to design knowledge-based treatment protocols and determine assessment benchmarks.

The aim of this work was to study the dynamics of Alitta succinea population growth in a tropical estuary. The organisms were collected in the polyhaline area of Pina Basin, north-eastern Brazil, in lower and shallow subtidal consolidated substrates, from October 2009 to March 2011. Fifteen samples with a size of 0.01 m2 were collected every month. A total of 2064 A. succinea individuals were measured for growth analysis, and the measure used was the length from prostomium to the 25th setiger. Growth parameters were estimated by the frequency–length distribution data from three different functions (i.e. von Bertalanffy, Gompertz and Richards). The differences in the densities of A. succinea were significant between the months of the dry and the rainy season, with the rain pattern being the factor that most affects the A. succinea life cycle. According to Akaike information criteria, the von Bertalanffy and Gompertz models were the ones that presented the best fit with the growth curve of A. succinea for the studied period. Using the Bhattacharya method for the analysis of modal progression, we identified eight cohorts. The lowest recruitment values were found in July and August 2010, respectively, and the remaining months had numbers of recruits that were representative of the total population. The growth performance index (Ø′) found was 2.86. The maximum longevity indicates that specimens of A. succinea live between 586 and 953 d, and the instantaneous mortality rate (Z) is 1.53 yr−1.

Our study tracked three non-native, marine, sessile, invertebrate species which have recently colonized the south-eastern United States Atlantic coastlines and estuaries: Mytella charruana, the charru mussel; Perna viridis, the Asian green mussel; and Megabalanus coccopoma, the titan acorn barnacle. Along the eastern Floridian coast, Mytella charruana was discovered in the Indian River Lagoon, Florida (FL) in 2004. Perna viridis was found in Ponce de Leon Inlet, FL in 2002, after being introduced to Tampa Bay, FL in 1989. Megabalanus coccopoma was documented in St Augustine, FL and Brunswick, Georgia in 2006. From 2006 through to 2011, a biannual survey of the south-eastern Atlantic coastlines and estuaries was conducted from Jupiter, Florida to Charleston, South Carolina (894 km) to document the distribution and range expansion of M. charruana, P. viridis and M. coccopoma. Field surveys were conducted in June and December each year at 82 sites (e.g. docks, boat ramps, jetties and mangrove roots). The ranges of the three invertebrates have expanded and retracted along the Atlantic coast since the survey began. Mytella charruana had spread as far north as Savannah, Georgia in 2007, but the species was absent from northern Georgia in 2010 and 2011. Perna viridis and M. coccopoma were present in Georgia in 2007, but were absent in the 2010 and 2011 surveys. These range fluctuations may be explained by extreme cold temperatures, which occurred during the 2009/2010 and 2010/2011 winters. The patterns observed with these three sessile invertebrates provide information regarding how non-native species disperse and establish in new locations.

Information on the dispersal ability of invertebrate species associated with woodland habitats is severely lacking. Therefore, a study was conducted examining the movement patterns of wood cricket (Nemobius sylvestris) (Orthoptera: Gryllidae) on the Isle of Wight, UK. Juvenile (i.e. nymphs) and adult wood crickets were released and observed over time within different ground surface substrates. Their movement paths were recorded and subsequently analysed using random walk models. Nymphs were found to move more slowly than adults did; and, when given a choice, both nymphs and adults showed a preference for moving through or over leaf litter compared to bare soil or grass. A correlated random walk (CRW) model accurately described the movement pattern of adult wood crickets through leaf litter, indicating a level of directional persistence in their movements. The estimated population spread through leaf litter for adults was 17.9 cm min−1. Movements of nymphs through leaf litter could not accurately be described by a random walk model, showing a change in their movement pattern over time from directed to more random movements. The estimated population spread through leaf litter for nymphs was 10.1 cm min−1. The results indicate that wood cricket adults can be considered as more powerful dispersers than nymphs; however, further analysis of how the insects move through natural heterogeneous environments at a range of spatio-temporal scales needs to be performed to provide a complete understanding of the dispersal ability of the species.

Habitat loss has pervasive and disruptive impacts on biodiversity in habitat remnants. The magnitude of the ecological impacts of habitat loss can be exacerbated by the spatial arrangement – or fragmentation – of remaining habitat. Fragmentation per se is a landscape-level phenomenon in which species that survive in habitat remnants are confronted with a modified environment of reduced area, increased isolation and novel ecological boundaries. The implications of this for individual organisms are many and varied, because species with differing life history strategies are differentially affected by habitat fragmentation. Here, we review the extensive literature on species responses to habitat fragmentation, and detail the numerous ways in which confounding factors have either masked the detection, or prevented the manifestation, of predicted fragmentation effects.

Large numbers of empirical studies continue to document changes in species richness with decreasing habitat area, with positive, negative and no relationships regularly reported. The debate surrounding such widely contrasting results is beginning to be resolved by findings that the expected positive species-area relationship can be masked by matrix-derived spatial subsidies of resources to fragment-dwelling species and by the invasion of matrix-dwelling species into habitat edges. Significant advances have been made recently in our understanding of how species interactions are altered at habitat edges as a result of these changes. Interestingly, changes in biotic and abiotic parameters at edges also make ecological processes more variable than in habitat interiors. Individuals are more likely to encounter habitat edges in fragments with convoluted shapes, leading to increased turnover and variability in population size than in fragments that are compact in shape. Habitat isolation in both space and time disrupts species distribution patterns, with consequent effects on metapopulation dynamics and the genetic structure of fragment-dwelling populations. Again, the matrix habitat is a strong determinant of fragmentation effects within remnants because of its role in regulating dispersal and dispersal-related mortality, the provision of spatial subsidies and the potential mediation of edge-related microclimatic gradients.

We show that confounding factors can mask many fragmentation effects. For instance, there are multiple ways in which species traits like trophic level, dispersal ability and degree of habitat specialisation influence species-level responses. The temporal scale of investigation may have a strong influence on the results of a study, with short-term crowding effects eventually giving way to long-term extinction debts. Moreover, many fragmentation effects like changes in genetic, morphological or behavioural traits of species require time to appear. By contrast, synergistic interactions of fragmentation with climate change, human-altered disturbance regimes, species interactions and other drivers of population decline may magnify the impacts of fragmentation. To conclude, we emphasise that anthropogenic fragmentation is a recent phenomenon in evolutionary time and suggest that the final, long-term impacts of habitat fragmentation may not yet have shown themselves.

A new tissue slice preparation of the cuttlefish eye is described that permits patch-clamp recordings to be acquired from intact photoreceptors during stimulation of the retina with controlled light flashes. Whole-cell recordings using this preparation, from the retinas of very young Sepia officinalis demonstrated that the magnitude, latency, and kinetics of the flash-induced photocurrent are closely dependent on the magnitude of the flash intensity. Depolarizing steps to voltages more positive than −40 mV, from a membrane holding potential of −60 mV, induced a transient inward current followed by a larger, more sustained outward current in these early-stage photoreceptors. The latter current resembled the delayed rectifier (IK) already identified in many other nerve cells, including photoreceptors. This current was activated at −30 mV from a holding potential of −60 mV, had a sustained time course, and was blocked in a dose-dependent manner by tetraethylammonium chloride (TEA). The smaller, transient, inward current appeared at potentials more positive than −50 mV, reached peak amplitude at −30 mV and decreased with further depolarization. This current was characterized as the sodium current (INa) on the basis that it was inactivated at holding potentials above −40 mV, was blocked by tetrodotoxin (TTX) and was insensitive to cobalt.

Intracellular perfusion of the photoreceptors, via the patch pipette, demonstrated that U-73122 and heparin blocked the evoked photocurrent in a dose-dependent manner, suggesting the involvement of the phospholipase C (PLC) and inositol 1,4,5-triphosphate (InsP3), respectively, in the phototransduction cascade. Perfusion with cyclic GMP increased significantly the evoked photocurrent, while the inclusion of phorbol-12,13-dibutyrate reduced significantly the evoked photocurrent, supporting the involvement of cGMP and the diacylglycerol (DAG) pathways, respectively, in the cuttlefish transduction process.

A scattering layer consisting mainly of krill (Meganyctiphanes norvegica) was studied with a submersible transducer, to assess the behaviour of individual organisms in situ by means of split-beam target tracking. Individuals were resolved and tracked, but a rapid increase in average swimming speeds with depth suggested that inaccuracies in the angular estimates affected the estimates. Attempts were made to smooth the tracks during post-processing. Smoothed speeds suggested that most (>78%) invertebrates swam at speeds below 12 cm s–1 (mode ~4 cm s–1), with components of speed larger in the horizontal plane than in the vertical.

In this paper we report on the biochemical presence of nitric oxide synthase (NOS)-like activity in Ascaris suum tissue and examine the pharmacological effect of NO donors on A. suum muscle strip preparation. NOS activity was determined by monitoring the formation of [3H]citrulline from [3H]L-arginine and NO formation via the oxyhaemoglobin assay. Neuromuscular tissue from A. suum which stained positively for NADPH diaphorase, contained NOS activity. Neither NOS activity nor NADPH diaphorase staining was detected in intestinal tissue. The absence of Ca2+, NADPH and other co-factors normally required for mammalian neuronal NOS activity only partially reduced the formation of both citrulline and NO by A. suum neuromuscular homogenate. The results of the biochemical assays indicate the presence of an enzyme capable of producing NO and citrulline, but with a different profile from that of rat neuronal NOS. We also present preliminary evidence for the action of NO (NO donors) in the neuromuscular system of A. suum.

The second messenger systems involved in the final stages of the phototransduction cascade in Limulus photoreceptors remain unclear. Excised patches of transducing membrane contain cGMP-gated channels, suggesting the involvement of cGMP in the excitation process. To further explore this possibility, we tested the effects of inhibitors and agonists of guanylate cyclase. The active site cyclase inhibitors guanosine 5′-tetraphosphate and adenosine 5′-tetraphosphate produced a reversible reduction of the response to light without affecting resting membrane properties. The cyclase inhibitor Rp-GTPαS produced a similar reduction, but the effect was only slightly reversible. The reduction in the response produced by these inhibitors was robust, often producing over a 95% decrease in the amplitude of the light response. Previous work had shown that an end-product cyclase inhibitor, imidodiphosphate, also inhibited the response. The consistent results with four different guanylate cyclase inhibitors strongly support the involvement of this enzyme in the phototransduction cascade. To determine whether the guanylate cyclase involved is the NO-dependent soluble form, we applied inhibitors and activators of the nitric oxide synthase/guanylate cyclase pathway such as L-N5-(1-iminoethyl) ornithine, sodium nitroprusside, and carboxy-PTIO. None of these agents had any substantial effect on phototransduction. Taken together, these results support a role for a particulate guanylate cyclase in Limulus photoreceptor excitation.

The role of diet on the growth, survival and movement of red grouse Lagopus lagopus scoticus chicks was examined. We compared two areas of moorland in Scotland: a dry heath with a low density of red grouse and poor chick survival; and a wetter heath/bog with relatively higher red grouse numbers and higher rates of chick survival. There were no differences in clutch size or the proportion of eggs hatching between the two moors but brood survival was significantly lower on the dry heath. Radio-tagged hens with broods were monitored during the first 12 days following hatching; the chicks were captured, weighed and faecal samples collected. Invertebrate samples were collected within brood feeding ranges. Analysis of chick faeces was used to identify dietary components. Heather comprised the major dietary component on both moors. Invertebrates formed a higher component of diet on the wet moor, and this was positively correlated with growth rates, which in turn were positively correlated with chick survival. We present data from an experiment carried out in 1982, in which chicks showed higher growth rates with increasing insect availability. We also show that broods in which all the chicks survived (4–10 days) had smaller home-range areas than broods in which some of the chicks died during this period. We suggest that the differences in chick survival between the two populations were the result of variations in the abundance of invertebrates, particularly tipulids. The protein provided by a high invertebrate component in the diet is, therefore, an important determinant of the growth and survival of young red grouse chicks in some areas.

During sperm/egg interaction, the sperm of Sicyonia ingentis undergoes a unique biphasic acrosome reaction. After acrosomal vesicle exocytosis, the sperm generates an acrosomal filament, over a period of 4-6 min, that is approximately 10 μm in length. Neither actin filaments nor normal microtubules have been demonstrated at the ultrastructural level of this unusual filament. Using a battery of cytoskeleton-directed antibodies the biochemical nature of this filament has been investigated. Antibodies to actin and tubulin do not label the subacrosome or acrosomal filament, but do recognise actin and tubulin in other shrimp tissues. Antibodies to tau, MAP2, and neurofilament medium and heavy subunits were all localised to the subacrosomal region of the sperm. It is interesting, however, that only the two clones of neurofilament monoclonal antibodies recognised the acrosomal filament. Electrophoretic and Western blot analysis in conjunction with amino acid sequencing revealed that the proteins localised to the acrosomal filament are of a unique sequence and may represent a new type of protein of centrosomal origin.