Human alteration of the planet’s terrestrial landscapes for agriculture, habitation and commerce is reshaping wildlife communities. The threat of land cover change to wildlife is pronounced in regions with rapidly growing human populations. We investigated how species richness and species-specific occurrence of bats changed as a function of land cover and canopy (tree) cover across a rapidly changing region of Florida, USA. Contrary to our predictions, we found negligible effects of agriculture and urban development on the occurrence of all species. In contrast, we found that a remotely sensed metric of canopy cover on a broad scale (25 km2) was a good predictor of the occurrence of eight out of ten species. The occurrence of all smaller bats (vespertilionids) in our study increased with 0–50% increases in canopy cover, while larger bats showed different patterns. Occurrence of Brazilian free-tailed bats (Tadarida brasiliensis) decreased with increasing canopy cover, and Florida bonneted bats (Eumops floridanus) were not influenced by canopy cover. We conclude that remotely sensed measures of canopy cover can provide a more reliable predictor of bat species richness than land-cover types, and efforts to prevent the loss of bat diversity should consider maintaining canopy cover across mosaic landscapes with diverse land-cover types.

An area in the central North Sea was surveyed in November 2011 in order to estimate the abundance and density of harbour porpoises (Phocoena phocoena). A total of 2833 km of pre-determined trackline were acoustically surveyed, of which 28% included visual effort. The poor sighting conditions during the survey limited visual effort and demonstrated the advantage of using acoustic techniques for studying harbour porpoise in winter months. Absolute abundance and density estimates were calculated from acoustic encounter rates using estimates of probability of detection and mean group size. The density of harbour porpoises in the west of the survey area was almost double that in the east, with UK waters to the south-west of the Dogger Bank having the highest density of the area surveyed. The overall acoustic encounter rate was higher than most other surveys in the North Sea. The mean density across the survey area of 0.63 (95% CI 0.27–1.52) individuals km−2 and distribution of porpoises was similar to that documented in the summer suggesting that high abundance of harbour porpoises in the west of the North Sea is not confined to summer months. This information is particularly relevant given plans for the construction of a large offshore wind farm on the UK section of the Dogger Bank; the resulting impacts, including acoustic disturbance from pile driving, will potentially affect substantial numbers of harbour porpoises.

The Chilean hake (Merluccius gayi gayi) is the predominant groundfishspecies inhabiting the southern Humboldt, mainly from Coquimbo (29° S) to Puerto Montt(42° S). At present there is only limited knowledge on the spatial distribution ofjuveniles of this species, particularly concerning its dependence on key physicalcharacteristics. On the basis of annual surveys carried out during austral winters from1997 to 2006, changes in the presence of juveniles were studied using Generalized AdditiveModel techniques. Temporal factors and spatial effects were more important than singlephysical variables in explaining the presence of juvenile hake (<34 cm totallength). Juvenile hake had a preference for shallower waters. Although salinity and oxygenwere significant, their contribution was marginal. Juvenile hake seem to prefer shallowoxygenated waters, but the nonlinear relationships and partial secondary peaks detected insalinity and oxygen probably only reflected the influence of three water masses found inthe winter habitat. Endogenous factors could be more important in determining temporal andspatial changes in the proportion of juvenile hake. An important change in the presence ofjuveniles has occurred since 2004, coinciding with a significant decline in biomass ofadult hake. It is postulated that cannibalism pressure from adults has probably declinedand that spatial and temporal changes in the presence of juvenile hake seem to be moreassociated with fishery-induced demographic effects.

Acoustic surveys can have several advantages over visual methods in surveys of cetaceans, although verification is required that novel techniques are effective. The T-POD is an autonomous acoustic data logger with inbuilt filters that can be set to match the click characteristics of the target species. We tested the performance of the T-POD for detecting Hector's dolphins at Flea Bay, Banks Peninsula, New Zealand. Simultaneous visual surveys were conducted from a hillside overlooking the bay, with distances between the T-POD and dolphins measured using a theodolite. Wideband sound recordings confirmed that T-POD detections were echolocation clicks made by Hector's dolphins. Detection probability and click train detection rate decreased with increasing distance, with no detections made beyond 500 m. By fitting detection functions to the probability of detection versus distance we showed that the T-POD effectively detected all dolphin groups within a radius of 198–239 m, depending on the click train categories utilized. The T-POD shows considerable promise as a tool for passive acoustic surveys of Hector's dolphins, with possible applications in studies of distribution, habitat use and echolocation behaviour.

The fisheries of Lake Victoria in East Africa must be managed effectively to ensure sustainable food supplies. This has been impossible in the past due to inadequate knowledge of commercially important fish stocks. Here we present the first acoustic abundance estimates of fish in Lake Victoria. Five lakewide acoustic surveys were conducted between 1999 and 2001, using the Simrad EY500 echo-integrator with a 120 kHz split-beam transducer. There are many species of fish in Lake Victoria, however, only limited identification of targets can be achieved by present methods. Broad categories were distinguished by visual examination of echo-traces. The echo-integrals were partitioned between four target groups: (1) the Nile perch (Lates niloticus), a top predator, (2) small pelagics comprising mainly the dagaa Rastrineobola argentea together with mixed species of haplochromines, (3) the crustacean Caridina nilotica and (4) other species. Spatial and temporal differences in the Standing Crop were observed between north and south, and between shallow and deep water. Most fish were found inshore but the spatial distribution varied between seasons. Mid-lake fish densities were higher in August compared to February. In August, the water column is well mixed while in February it is stratified with a low-oxygen layer inhospitable to fish near the bottom. There are consequent changes in the characteristics of observed echo-traces. Over the survey series, Nile perch biomass showed a consistent decline, while the stocks of small pelagic species increased. We emphasize the need for simple rules to identify species, and hydrographic monitoring to assist echo-trace classification. In the absence of any other source of comprehensive biomass estimates, the value of acoustic surveying in Lake Victoria is demonstrated.

Standard geostatistical techniques provide effective methods for estimating the global abundance and precision of a variable of interest, for mapping its spatial distribution and for describing its spatial structure. In the case of acoustic survey data, however, obtaining a measure of precision of the global abundance estimate is confounded by the combination of variances from the interpolation of both the acoustic data and the concomitant fish length data. Even if the global estimation variance could be calculated, the distribution of the estimation error is not known and so confidence intervals cannot be determined. Furthermore, kriged distribution maps, in minimising the estimation variance, tend to smooth out local details of the attribute’s spatial variation: small values can be overestimated and larger ones underestimated, such that the kriged map is smoother than reality. This can lead to serious shortcomings when trying to detect patterns of extreme attribute values, such as the high densities encountered in some fish schools. Stochastic geostatistical simulations, conditional on sampled locations, provide a solution to many of these problems. They can deliver a measure of uncertainty for local (density) estimates, a confidence interval estimation for the global mean density, and finally, reproduce global statistics, such as the sample histogram and variogram. In so doing, they also provide maps of the attribute, which are spatially realistic because the variogram is reproduced; these are generated as a number of equiprobable realisations. In the present paper, we apply these techniques to acoustic data from an acoustic survey of North Sea herring. Sequential gaussian simulations are used to generate realisations for fish length and values of the nautical area scattering coefficient. These are then combined to produce realisations of herring density. The combined set of multiple realisations is then used to provide confidence intervals for the global abundance estimate: 95% of the herring abundance estimates are between 5677 and 6271 millions of individuals. Although the method presented in this paper contributes to the assessment of total uncertainty for acoustic surveys, the approach may have suffered from bias due to the use of off-the-shelf data transformation algorithms on fisheries acoustic data, which are often very positively skewed. We discuss this limitation and propose corrections for future work.

A method is presented to estimate and diagnose the sources of uncertainty in acoustic survey measures of fish density. The method involves simultaneous Monte Carlo simulation of density and uncertainty resulting from imprecision in all terms in acoustic analyses. Known bias can also be considered. Results are presented from theoretical simulations based on assumed distributions of fish density and acoustic parameters at sample sizes from 10–1000, and on survey data for Atlantic cod and redfish. Uncertainty can be reduced by either increasing the sample rate or by decreasing the error in input variables (system and ocean parameters, backscatter, target strength, species identification, detectability). Uncertainty in inshore cod surveys in Newfoundland waters can be attributed for the most part to heterogeneous fish distribution and detectability variance (total R2 = 0.64). Uncertainty in offshore redfish surveys is attributed to heterogeneous fish distribution, and variance in target strength and species identification (total R2 = 0.82). Uncertainty can be reduced by survey design, not only by the classical methods of achieving less diverse measures of backscatter, but also by increasing precision in the input parameters to the density estimate, in particular, target strength, detectability, and species identification.

The behaviour and spatial distribution of tuna, aggregated beneath fish aggregating devices (FADs), have been studied through ultrasonic tagging experiments but, surprisingly, very few studies on FADs have used underwater acoustic devices. We present techniques, and their limits, incorporating a scientific echo sounder connected to a split-beam transducer to observe and characterise tuna aggregations around FADs, and propose a general approach for future studies. Experiments were conducted in French Polynesia between December 1995 and February 1997. Two methods, echo-counting and echo integration, were used. Echo-counting is possible when individual fish are sufficiently scattered so that each target can be discerned. On the other hand, echo integration can be used with both scattered and aggregated fish schools. The knowledge of tuna target strength is useful for separating targets for echo-counting, and essential for obtaining absolute estimates of densities by echo integration. Sonar performances and settings should be considered when choosing the most suitable method to determine fish density or assessing spatial structure of a tuna aggregation. These techniques allow one to study an entire tuna aggregation, its behaviour in space and time at very fine time–space scales (about a nautical mile and over a few hours), and open up a new scientific field to study the spatial structure and behaviour of tuna aggregations around anchored or drifting FADs.

In order to manage the fish stock of the Senegal coastal zone it is necessary to carry out direct assessment surveys by acoustic methods. Acoustic surveys were carried out in this region from a sports-fishing boat, using a split-beam echo sounder in vertical mode, in areas with depth less than 15 m. On a short time scale, spatial structure of the fish population remained stable. The average acoustic biomass detected was variable, but we observed a relative stability of target strength distribution of single fish. The use of acoustic methods in these areas of shallow depths, the consequences of escape behaviour of the fish, and sampling strategies are discussed.