Vertical stratification of vascular epiphytes is frequently attributed to niche partitioning along microclimatic gradients but experimental confirmations of this notion are rare. This study investigates the role of the regeneration phase for the stratification of five bromeliad (Catopsis sessiliflora, Guzmania subcorymbosa, Tillandsia anceps, T. bulbosa and Werauhia gladioliflora) and seven aroid species (Anthurium acutangulum, A. brownii, A. clavigerum, A. durandii, A. friedrichsthalii, A. hacumense and A. scandens) in a Panamanian rain forest. We documented gradients of temperature, vapour pressure deficit and light (n = 10 d) as well as species height distributions (n = 11–120). Microclimatic gradients were substantial (maximal T and RH differences between strata: 5 °C and 18%, respectively) and mean attachment heights of the study species (range = 4–21 m) differed significantly. We tested sensitivity to recurrent drought (four treatments) during germination (all species, cumulative germination of 20 seeds, n = 3) and seedling growth (four aroid species, n = 25). Seedling survival of six aroid species transplanted to three heights (n = 27) was monitored in situ. Some species did not germinate under severe recurrent drought while others germinated at the same rate in all treatments. Seedlings of the most exposed species grew fastest under intermediate recurrent drought while those of the other three species grew fastest when kept constantly wet. Survival of transplanted seedlings did not depend on species attachment height, but this may be attributable to insufficient statistical power. Taken together, the results suggest that the stratification can be explained to a large degree by differential sensitivity to the vertical moisture gradient during the regeneration phase.

Neotropical streams are losing dominant consumer groups as a result of disease-driven amphibian declines. The herbivorous tadpoles of Lithobates warszewitschii were once abundant in the Rio Maria in the Eastern Cordillera Central of Panama, where they consumed algae and organic matter. The decline of this once abundant grazer has the potential to affect the resources consumed by insect grazers in this system. Stable isotopes were used to characterize changes in the resource use before and after amphibian declines of four abundant insect grazer taxa: Stenonema spp., Thraulodes spp., Psephenus spp. and Petrophila spp. We collected 11 isotope samples of L. warszewitschii and 27 isotope samples of these insect taxa in 2006, and then 24 more isotope samples of the same insect taxa in 2008, 20 mo. after a disease-driven amphibian extirpation. We also tested for potential functional redundancy of insects with tadpoles by comparing the post-decline isotopic niche of each insect taxon to the isotopic niche of L. warszewitschii. The isotopic niche of Psephenus spp., Petrophila spp. and Stenonema spp. shifted from 2006 to 2008, but none of the insect taxa in 2008 occupied the same isotopic niche as tadpoles. Our study builds on previous evidence that the ecological roles of tadpoles were not replaced through functional redundancy after amphibian declines.

Plant survival and growth in tropical rain forest are affected by different biotic and abiotic forces. As time elapses and plants grow the relative importance of such forces as regeneration inhibitors and/or facilitators may change according to habitat and species. To detect within- and among-species divergences in performance over time in different habitats we followed, for nearly a decade, the survival, growth and herbivory of seedlings of the native tree species: Chrysophyllum pomiferum, Micropholis venulosa and Pouteria caimito. In Central Amazonia, young seedlings were planted into old-growth and secondary forests dominated by Vismia spp. One year after planting, C. pomiferum ranked first (i.e. fast growth, fewer dead and less herbivory) for both habitats, followed by M. venulosa and P. caimito. Initial trends changed over time. In the long term, M. venulosa ranked first for both habitats, followed by C. pomiferum and P. caimito ranked consistently lowest. Within-species divergences in growth and herbivory were greater in secondary forest. Initial seedling responses cannot always be used to predict species persistence in the long term. Contrary to previous estimations, old-growth-forest species can persist under Vismia spp. stands, at least when planted.

To investigate the influence of forests and agroforestry systems on fruit consumption by birds, we studied two landscapes, one covered predominantly with forests and the other dominated by traditional shade cocoa plantations. In each landscape, we sampled three forest fragments and three shade cocoa plantations. We placed 15 artificial fruits in 25, 1–2-m-tall shrubs spaced every 50 m and evaluated the detection and consumption of fruits after 72 h. We used hemispherical photographs positioned above each fruit station to evaluate canopy openness. We found a statistically significant difference in fruit consumption between landscapes, which means that more fruits were detected and consumed in the forest-dominated landscape. However, forests and shade cocoa plantations within each landscape exhibited similar fruit consumption. Canopy openness was similar between the landscapes, however, the cocoa plantations exhibited greater canopy openness than forests. The results of this study reinforce the importance of the presence of forests in the agricultural landscape. Thus, to evaluate the capacity of agroforest to protect species and maintain ecological interactions it is also necessary to consider the landscape context.

Fragmentation of tropical forests influences abiotic and biotic processes that affect the genetic structure of plant populations. In forest fragments, edge effects, i.e. changes of abiotic and biotic factors at forest edges, may be prevalent. In two forest fragments (c. 200 ha at c. 2450 m asl) of tropical montane forest in Bolivia, sympatric populations of the dioecious tree species Clusia sphaerocarpa and C. lechleri were used as case study species to compare genetic diversity and small-scale genetic structure (SGS) between edge and interior habitats. Eight microsatellite markers were employed to genotype 343 individuals including adults, juveniles and seedlings of C. sphaerocarpa and 196 of C. lechleri. Genetic differentiation was found between habitats in both species (ΦRT = 0.071 for C. sphaerocarpa and ΦRT = 0.028 for C. lechleri) and among ages in C. sphaerocarpa (ΦRT = 0.016). Overall, SGS was weak but significant with more pronounced SGS in C. lechleri (Sp = 0.0128) than in C. sphaerocarpa (Sp = 0.0073). However, positive spatial genetic autocorrelation extended only up to 10 m. For C. sphaerocarpa, SGS was stronger in seedling and juvenile stages than in adults and in the forest interior than at forest edges. Our results show that edge effects can extend to the genetic level by breaking-up local genetic structures, probably due to increased gene flow and enhanced pollination and seed-dispersal interactions at forest edges.

Understanding the response of biodiversity to land-use changes is an important challenge for ecologists. We assessed the effects of five landscape metrics (forest cover, number of patches, edge density, mean inter-patch isolation distance and matrix quality) and three patch metrics (patch size, shape and isolation) on the number of species and patch occupancy of medium- and large-sized terrestrial mammals in the fragmented Lacandona rain forest, Mexico. We sampled mammal assemblages in 24 forest patches and four control areas within a continuous forest. The landscape metrics were measured within a 100-ha buffer, and within a 500-ha buffer from the centre of each sampling site. A total of 21 species from 13 families was recorded. The number of species increased with shape complexity and patch size at the patch scale, and with matrix quality within 100-ha landscapes. When considering 500-ha landscapes, only the number of patches (i.e. forest fragmentation level) tended to have a negative influence at the community level. Different landscape and patch metrics predicted the occurrence of each species within the sites. Our results indicate that there is a gradient of tolerance to forest cover change, from highly sensitive species to those tolerant of, or even benefited by, forest-cover change.

Conversion of natural habitats to anthropogenic land uses is a primary cause of amphibian declines in species-rich tropical regions. However, agricultural lands are frequently used by a subset of forest-associated species, and the habitat value of a given land use is likely modified by the presence and characteristics of remnant trees. Here we used mark–recapture methods to examine abundances and movement probability of the poison frog, Oophaga pumilio, at individual trees in forest-fragment edges and adjacent pastures in north-eastern Costa Rica. One hundred and forty-seven trees were surveyed at three replicate sites that each included a forest fragment and adjacent pasture. Trees were sampled at distances of ≤30 m into forest and ≤150 m into pastures for Oophaga pumilio, and local environmental characteristics were measured at each tree. We also measured indices of physical condition (size and endurance) of frogs captured in forest edges and in nearby pastures. Analyses of 167 marked individuals showed no difference in per-tree abundances or sex ratios between pasture and forest edges. We found significant interactions between habitat type and leaf-litter cover, tree dbh and number of logs, indicating greater influence of local variables on abundances in pastures. Movement among trees was infrequent and not predicted by sex, size, habitat type or environmental variables. While results of endurance tests did not differ for individuals from the two habitats, frogs captured in pastures were, on average, larger than frogs captured in forest edges. These data indicate that remnant trees are important habitat features for O. pumilio in pastures and corroborate research in other systems that suggests that large relictual trees should be retained to maximize the potential for altered landscapes to provide habitat for native species.

The pollination ecology and breeding system of Trochetia granulata (Malvaceae), an endemic tree species from Réunion were studied. In 2010–2011, compatibility studies were conducted on a total of 154 flowers from 35 different individuals using three different hand pollination treatments: (a) autofertility, (b) self-pollination and (c) cross-pollination. During the period, we also studied the pollination ecology of T. granulata. During 48 h of video recordings, we tracked flower visits to T. granulata in six different sites and studied the behaviour of the visitors. The results from the hand-cross experiments show that T. granulata is self-compatible (60.8% fruit set) but cannot produce fruit (5.4% fruit set) without the visit of a pollen vector. During surveys, four different visitors were reported: the introduced honey bee (Apis mellifera), two endemic species of white-eye (Zosterops borbonicus borbonicus and Z. olivaceus) and the endemic Réunion day gecko (Phelsuma borbonica). This study documented a new case of vertebrate-pollination by lizard and birds in an insular context. These interactions might be linked to several uncommon floral traits of Trochetia species.

Root climbers constitute a distinctive group within climbing plants and some evidence suggests that they are associated with high precipitation and low light availability at local scales, which is in contrast with general patterns of liana distribution in the tropics. The influence of precipitation and seasonality on the occurrence of root climbers was evaluated both globally and in the tropics. The presence/absence of root climbers was recorded in 174 sites of Alwyn H. Gentry Forest Transect Data Set. The effects of mean annual precipitation and dry-season length (and temperature) on their occurrence were analysed using logistic regressions. Root climbers were significantly more frequent in sites with greater precipitation and reduced seasonality. Increasing temperature reduced root-climber occurrence in tropical sites, but this effect was marginally significant at a global scale. Dry and open habitats appear unsuitable for root climbers. This can be explained by the susceptibility to desiccation of adventitious roots and/or the low acclimation ability of these climbers to high irradiance.

Patterns of leaf production and leaf fall directly influence leaf area index and forest productivity. Here, we focused on Cecropia sciadophylla individuals inhabiting the extremes of the gradient in seasonality in rainfall at which C. sciadophylla occurs. In Colombia and French Guiana we compared the intra-annual variation in leaf production as well as the intra-annual fluctuation in internode length on a total of 69 saplings ranging in size from 1 to 2 m. The mean rate of leaf production was ~2 leaves mo−1 in both populations, and the rate of leaf production was constant throughout the year. Our results showed monthly variation in internode length and the number of live leaves per sapling in the seasonal habitat and variation only in internode length in the everwet habitat. Because the rate of leaf production is constant at both localities, the difference in number of live leaves per sapling at the seasonal site must reflect seasonal variation in leaf life span. We show that in Cecropia, internode length can serve as an indicator of precipitation seasonality. Finally an open question is whether leaf production in other pioneer species is also independent of climatic seasonal cues. This information could allow us to link growth and climate of secondary forest species and better understand how past and future climate can affect plant growth trajectories.