Breeding of temperate forage grasses is aimed at improving the economic and environmental sustainability of production from cattle and sheep. The primary objective is to ensure that forage can be the main source of feed for ruminants. This requires consistent production of herbage with a high feeding value, usually under nitrogen-limiting conditions. The most important traits affecting the feeding value of herbage are in vitro dry matter digestibility (DMD), the ratios of crude protein, water-soluble carbohydrate and fibre, and the concentration of alkaloid toxins. Improvements in these primary quality traits must be combined with good plant persistency, adequate tolerance to a range of environmental stresses, adequate resistance to a large number of different pathogens and invertebrate pests, and adequate seed yield. Forage grasses also have considerable potential to produce material for refining, to provide protein extracts for feeding to monogastric animals and carbohydrate for fermentation into fuel or into feedstocks for other industries.

Three experiments were carried out to investigate the dry matter production of nine white clover (Trifolium repens L.) varieties grown with the same variety of perennial ryegrass (Lolium perenne L.) and subjected to rotational grazing by sheep over a period of 10 years. The experiments differed only in the nitrogen fertilizer added: no nitrogen, 100 kg/ha per year and 200 kg/ha per year. Dry matter (DM) yields of white clover and perennial ryegrass components of the sward were recorded at approximately 6-week intervals during the growing season.

Without applied nitrogen, 10-year mean white clover annual DM yields ranged from 2·89–4·54 t/ha. Mean clover content for all varieties ranged from 31–50% for the first 9 years, declining to 20% in the 10th year. The most consistently high yielding variety, AberVantage, gave yields greater than 3·5 t/ha in every year. Similar results were observed for the variety Aran. The 10-year mean annual DM yield of the perennial ryegrass companion (variety Talbot) ranged from 4·41–5·57 t/ha depending on the white clover variety in the mixture. Variation in perennial ryegrass DM yield was of a similar range and pattern as for white clover.

In the experiment in which 100 kg N/ha per year was added, 10-year mean white clover annual DM yields ranged from 2·27–3·87 t/ha. The varieties AberVantage and Aran showed yields that fell below 3 t/ha per year in only 1 or 2 years, respectively. Mean clover content for all varieties ranged from 26–38% for the first 9 years, declining to 17·5% in the 10th year. There was no consecutive annual decline in white clover DM yields. The 10-year mean annual DM yields of the perennial ryegrass companion ranged from 6·03–7·57 t/ha.

With applied nitrogen fertilizer of 200 kg N/ha per year (Experiment 3), 10-year mean white clover annual DM yields ranged from 1·21–2·67 t/ha. Mean clover content ranged from 12–27% for the 10 years. AberVantage and Aran showed yields consistently above 2 t/ha. No general decline in white clover DM yields was observed although some varieties showed consecutive annual reductions in years 8, 9 and 10. The 10-year mean annual DM perennial ryegrass yields ranged from 7·27–8·68 t/ha.

The results show that, under rotational grazing by sheep, white clover can give reliably high yields over a 10-year period. With moderate to high applications of nitrogen fertilizer white clover yields were lower than without nitrogen but they were consistent and sufficient to make a considerable impact on forage quality. There was no evidence for a general decline in clover content until the 10th year of the experiment and no cyclical pattern of annual variation in white clover yield was observed. The implications of these results for the role of white clover in UK agriculture are discussed.

A field experiment was initiated at the Central Soil Salinity Research Institute, Karnal, India between 1994 and 1998 involving use of NPK fertilizers alone and in combination with green manure (Sesbania bispinosa) or farmyard manure (FYM) in a rice–wheat cropping sequence. An attempt was made to evaluate the effect of the substitution of inorganic fertilizers with organic manures on yields of grain and nutrients, economy and soil fertility during 1997–98 and 1998–99. Application of NPK and its combination with green manuring and FYM increased the rice yield significantly. Applying inorganic fertilizers resulted in similar nitrogen use efficiency (NUE) in rice as compared with organic manures along with inorganic fertilizers, but NUE was increased in wheat by the residual effect of organic manures along with inorganic fertilizers. The responses of rice to the application of the full recommended amount of inorganic fertilizers (120 kg N, 26 kg P and 42 kg K/ha) and its combined use with green manure or 10 t/ha FYM and 150% recommended amount (180 kg N, 39 kg P and 63 kg K/ha) were 2·98, 4·27, 4·10 and 3·54 t/ha, respectively. Further, with green manure or 10 t FYM/ha in combination with 50% recommended amount, the mean rice yield (5·8 t/ha) was similar to the yield (5·5 t/ha) obtained from the 100% NPK recommended treatment. Application of green manure or 10 t FYM/ha thus saved 60 kg N and 13 kg P/ha inorganic fertilizer in rice. The residual effect of green manure or FYM plus the full recommended fertilizer amount (120 kg N, 26 kg P and 42 kg K/ha) was significantly greater than that of the full recommended amount of fertilizer. Addition of green manure or FYM resulted in higher removal in crops, increase of soil N, P, K and organic C, and reduced soil pH. Application of the full recommended amount of fertilizer only maintained the N, P and K status in soil. Higher profit was obtained when inorganic fertilizer was combined with organic manures.

Field experiments were undertaken during 1998–2000 at Askov Experimental Station and Lundgård Experimental Site, Denmark, to investigate the fertilizer value of anaerobic and aerobic sewage sludges (SS1 and SS2), composted household waste (Compost) and farmyard manure (FYM). The organic residues were applied at two rates with or without supplementary mineral nitrogen (N). The effects of residue application on spring cereal dry matter (DM) yield and N-offtake were related to reference treatments with increasing rates of calcium ammonium nitrate (CAN). DM yields at the high application rates of aerobic sewage sludge (198 kg N/ha/year) and farmyard manure (300 kg N/ha/year) were comparable to the reference treatments receiving 90 kg mineral-N/ha/year. The comparable high application rate of anaerobic sewage sludge was 138 kg N/ha/year only and the DM yield was less. In contrast, the yield effect of Compost was very poor; even the high application rate of 321 kg N/ha/year yielded less than the low application rates of aerobic sewage sludge and farmyard manure, 66 and 100 kg N/ha/year, respectively.

The nitrogen fertilizer replacement value (NFRV) of the organic residues was estimated for all four combinations of the response variables DM-yield and N-offtake and the independent variables of total-N and ammonium-N applied. NFRV was in the range 49–68% for the sewage sludges and FYM based on the DM-yield[ratio ]total-N relation, and slightly smaller for the N-offtake[ratio ]total-N relation, 29–53%. The highest values were obtained for the aerobic sewage sludge, having a potential manurial value comparable to FYM. In contrast, the NFRV of Compost was low, about 10%.

The concentration of ammonium-N in organic residues and manures is often used for predicting the fertilizer value. Ammonium-N based NFRV of 160–210% for the sewage sludges indicate that water extractable ammonium-N underestimates the NFRV, probably due to the content of easily degradable organic matter in digested sewage sludge. The estimated NFRV for Compost was above 100% but connected with high uncertainty. In contrast, the ammonium-N based NFRV for FYM was only 70–87%, probably due to ammonia volatilization caused by incomplete incorporation of large quantities and the high ammonium-N[ratio ]total-N ratio in this residue.

The present study investigated how increasing silica content modifies the chemical and morphological characteristics and microbial degradation of rice straw. Two rice straws grown on culture media with different silica contents were collected and analysed for chemical and morphological composition and ultrastructure. Silica content (g/kg DM) of the two straws was high (98·0, straw H) and low (0·0, not detected, straw L). The ground (2 mm) straws were incubated in the rumen of three ruminally cannulated cows for 4, 8, 16, 24, 48 and 96 h for in sacco degradability measurements. The main fractions (stem, leaf sheath and blade) of each straw were incubated for 24 h. Kinetics were fitted to an exponential model with lag time. Scanning electron microscopy was used to examine intact fragments of stems and fragments incubated for 6, 24, 72 and 96 h in cow rumen. X-ray analysis was carried out on non-incubated fragments for silica mapping. A reduction of stem content from 320 to 270 g/kg straw, and an increase in leaf sheath content from 360 to 400 g/kg straw, were found for an increase in silica content from 0 to 100 g/kg DM. Chemical composition differed little between straws H and L, except for ash and silica contents. The ash originated mainly from the leaves and increased with silica content from 70 to 140 g/kg DM. The DM degradability was lower in the H than in the L straw. This reduction came mainly from a lower non-NDF component degradation in straw H. Stems were more degraded than leaf fractions for DM, NDF and non-NDF components; their degradation was depressed in the H straw. X-ray analysis showed that the deposition of silica on the stem epidermis was different, with a thick layer on H stems and no deposition on L stem surfaces. As a consequence, microbial colonization and degradation were faster on the epidermis of straw L. Epidermal silica did not hinder degradation from the internal cavity.

This study was conducted to determine the effects of plastic film mulch on percentage of abortive tillers and harvest index (HI) in two spring wheat populations, and to explore its mechanism in relation to size inequality and life-history strategies theory. Field-grown spring wheat mulched with plastic film shows a remarkable increase in grain yield (an average increase of 38·5% over non-mulched control), which mainly results from the significant increase in above-ground biomass (+44·7%). At the same time, however, reproductive allocation (spike weight/above-ground biomass, −5·2%) and harvest index (−4·5%) were significantly lower (P<0·05) in mulched than unmulched populations in both of the two cultivars used. Meanwhile, the number and weight of barren shoots and the ratio of barren shoot biomass to total shoot biomass were significantly greater in mulched populations than unmulched controls both at booting, flowering and ripening stages. From tillering to ripening stages, the tendency of G (Gini coefficient) shows obvious differences between mulched populations (‘∧’ type with the peak of G at booting stages) and non-mulched controls (‘∨’ type with the lowest G at flowering and rebounded at ripening stage). At booting and flowering, the G was significantly higher in mulched populations than unmulched controls, and it was just contrary at ripening. Reproductive allocation and HI were both negatively correlated to average G of the populations, which indicated that resource use efficiency of a crop is inversely related to plant-to-plant variability and also provided further evidence for the views that stand uniformity of field crops is an important aspect of high yield formation. From these results, it was concluded that appreciable growth redundancy occurred in spring wheat populations mulched with plastic film, which may result from the exacerbated inter-plant competition and self-thinning (evidenced by the increased degree of Gini coefficient at booting and flowering stages). Thus, spring wheat cultivation with plastic film mulching does not always mean efficiency, although there is a remarkable increase in grain yields.

An indoor experiment involving 10 rumen-cannulated Romney sheep was conducted in May and June 1998 at AgResearch Grasslands, Palmerston North, New Zealand, under restricted feeding conditions, in order to test the hypothesis that animal factors, in particular rumen fractional outflow rate (FOR) and rumen volume, have an influence on the between-sheep variation in methane (CH4) emission. Sheep were fed 2-hourly on chaffed lucerne hay. Following an acclimatization period of 21 days, the experiment lasted 16 days. Energy and nitrogen (N) balances were measured on days 1–6. Cr-EDTA marker was continuously infused into the rumen from day 9 to 16, and rumen contents emptied and sampled on days 13 and 16. Particulate and fluid FOR were estimated using feed lignin and Cr-EDTA, respectively. Daily CH4 production was measured by the sulphur hexafluoride tracer technique on days 2, 5, 6, 12 and 15 of the experiment.

CH4 production (g/day) was positively correlated with the pool size of organic matter (OM) in the rumen (OM pool, g) (r=0·84, P=0·002), OM intake (OMI, g/day) (r=0·67, P=0·04), and the rumen fill (g, wet digesta) (r=0·76, P=0·01). Multiple regression analysis showed that CH4 production was best predicted (R2=0·88) as a function of OM pool and the molar % of butyrate; however, OM pool alone accounted for a large proportion (R2=0·71) of the variation in CH4 production.

CH4 yield (% gross energy intake, % GEI) was negatively correlated with the particulate FOR (%/h) (r=−0·75, P=0·01) and buffering capacity of rumen fluid (mmol HCl) (r=−0·72, P=0·02), but positively correlated with the digestibility of cellulose (r=0·66, P=0·04). Multiple regression analysis showed that CH4 yield was best predicted as a function of particulate FOR, OMI (g/kg liveweight0·75) and the molar % of butyrate (R2=0·88). Particulate FOR alone explained a large proportion (R2=0·57) of the variation in CH4 yield. Particulate FOR was negatively correlated with rumen fill (r=−0·69, P=0·03) and digestibility of cellulose (r=−0·65, P=0·04).

These results suggest that sheep with lower rumen particulate FOR (i.e. longer rumen retention times) had larger rumen fills and higher fibre digestibilities and CH4 yields. If rumen particulate FOR is to be used as a tool for CH4 mitigation, the repeatability of its relationship to CH4 emission must be assessed, preferably under grazing conditions.

Based on the knowledge that alpaca (Lama pacos) have a lower fractional outflow rate of feed particles (particulate FOR) from their forestomach than sheep (San Martin 1987), the current study measured methane (CH4) production and other digestion parameters in these species in three successive experiments (1, 2 and 3): Experiment 1, lucerne hay fed indoors; Experiment 2, grazed on perennial ryegrass/white clover pasture (PRG/WC); and Experiment 3, grazed on birdsfoot trefoil (Lotus corniculatus) pasture (Lotus). Six male alpaca and six castrated Romney sheep were simultaneously and successively fed on the forages either ad libitum or at generous herbage allowances (grazing). CH4 production (g/day) (using the sulphur hexafluoride tracer technique), voluntary feed intake (VFI), diet quality, and protozoa counts and volatile fatty acid concentrations in samples of forestomach contents were determined. In addition, feed digestibility, energy and nitrogen (N) balances and microbial N supply from the forestomach (using purine derivatives excretion) were measured in Experiment 1.

Diets selected by alpaca were of lower quality than those selected by sheep, and the voluntary gross energy intakes (GEI, MJ) per kg of liveweight0·75 were consistently lower (P<0·001) for the alpaca than for the sheep (0·74 v. 1·36, 0·61 v. 1·32 and 0·77 v. 2·53 on lucerne hay, PRG/WC and Lotus, respectively). Alpaca and sheep did not differ (P>0·05) in their CH4 yields (% GEI) when fed on lucerne hay (5·1 v. 4·7), but alpaca had a higher CH4 yield when fed on PRG/WC (9·4 v. 7·5, P<0·05) and Lotus (6·4 v. 2·7, P<0·001). When grazing on Lotus, the sheep had very high protozoa counts in their forestomach contents, compared with those with the other forages and those in the alpaca. On lucerne hay and Lotus, but not on PRG/WC, the alpaca had higher (P<0·01) acetate/propionate ratio in their forestomach fluid than sheep. When fed on lucerne hay, alpaca and sheep did not differ (P>0·05) in diet N partition or microbial N yield, but alpaca had higher (P<0·05) neutral detergent fibre digestibility (0·478 v. 0·461) and lower (P<0·01) urinary energy losses (5·2 v. 5·8 % GEI) than sheep. It is suggested that differences between these species in forestomach particulate FOR might have been the underlying physiological mechanism responsible for the differences in CH4 yield, although the between-species differences in VFI and diet quality also had a major effect on it.

Four low and four high methane (CH4) emitters were selected from a flock of 20 Romney sheep on the basis of CH4 production rates per unit of intake, measured at grazing using the sulphur hexafluoride (SF6) tracer technique. Methane emissions from these sheep were monitored at grazing for four periods (P): October, November, January and February 1999/2000. All measurements were carried out on perennial ryegrass/white clover pasture under generous herbage allowance, and the sheep were maintained on similar pastures during non-measurement periods. The tracer technique was used for all the CH4 measurements and feed DM intake was calculated from total faecal collection and estimated DM digestibility. Data for liveweight (LW), gross energy intake (GEI) and CH4 emission were analysed using split-plot analysis of variance. In addition, a between-period rank order correlation analysis was carried out for CH4 emission data.

Low CH4 emitters were heavier (P<0·05) than the high emitters in all the periods, but they did not differ (P<0·05) in their gross energy intakes (GEI: MJ/kg LW0·75). Low and high CH4 emitters consistently maintained their initial rankings in CH4 yield (% GEI) throughout the subsequent periods and the correlation analysis of rank order for CH4 yield showed strong between-period correlation coefficients, although this was weaker in the last period. It is suggested that feeding conditions that maximize feed intake (e.g. generous allowance of good quality pasture under grazing) favour the expression and persistence of between-sheep differences in CH4 yield.

The effect of base composition biases on codon usage patterns was investigated in the goat species Capra hircus, using custom-designed computational tools available within the public domain. Nucleotide frequencies were nearly equal and a slight increase of adenine–thymine (AT) over guanine–cytosine (GC) was detected throughout the dataset. However, this increase showed no influence on the bases at the third codon position (N3). C3 and G3 were found more often than A/T3, suggesting that there was a small or almost no influence of the general base composition on the N3 base composition. To understand more and analyse in-depth influence and interactions between base compositions and codons, further relative synonymous codon usage (RSCU) was investigated. Amino acid usage and the correlation between its usages were also investigated, using both basic sequence analysis and statistical analysis means (measures of correlation). These analyses were utilized to probe whether there were correlations between genes, genomic characteristics and their function. Genes with high GC and those with low GC were also investigated to see to what extent how a gene functions could influence its sequence structure and impose certain structural modifications. This investigation may shed light on many genomic features of Capra hircus genes and would be of significance for future biotechnology/research projects considering Capra for transgenic and advanced genomic initiatives.