Between 1994 and 1999, several sampling designs were used to measure the growth of the black-lip pearl oyster, Pinctada margaritifera var. cumingi at different sites in French Polynesia. Using a common statistical method, growth data were analysed for nine sites and showed significant geographic variability. Parameters of the Von Bertalanffy model, fitted on the nine data sets, ranged from 147 to 186.5 mm for the H∞ parameter and from 0.42 to 0.58 year–1 for the k parameter. The φ parameter (combination of H∞ and k) provided a ranking classification of growth in these nine sites: growth was low in closed atoll lagoons, such as Takapoto, whereas the island lagoons and ocean habitat supported a very promising shell growth. Calculated on the basis of these models, two parameters of interest for pearl farming were computed: 1) the time for pearl oysters to reach a size of 100 mm (size at which they are suitable for nucleus implantation), which ranged from 21 to 26 months, and 2) the annual shell growth increment at this size (correlated to the rate of nacreous deposition on the pearl), which varied from 19.7 to 31.8 mm·year–1. The combination of these two sets of results demonstrated that the time necessary to produce a comparable pearl varied significantly according to the site. Several hypotheses to explain the differences observed in the growth of P. margaritifera in these nine sites are proposed. The most reasonable would appear to be: 1) the negative effect of high temperature (> 30°C), and 2) the degree of water renewal and food supply around the bivalve. Although this paper demonstrated significant variability in growth performance in the nine investigated sites, further investigations are needed, especially concerning the flesh growth rate. Indeed, this highly relevant parameter, which reflects both bivalve health and the suitability of farming sites, has received very little attention to date.

Data concerning the planktonic food web and the farmed pearl oysters of the lagoon of Takapoto Atoll were assembled into a steady state model of carbon flows. A method of optimisation, using constraints from the literature, called ‘inverse analysis’ was chosen as the numerical tool for estimating the missing flow values. The resulting food web is characterised by: 1) high primary production, achieved by low phytoplankton biomass, 2) high production of non-living matter, especially as dissolved organic carbon, 3) low bacterial production, 4) zooplankton dominated by protozoa (biomass and processes) and mesozooplankton (processes), and 5) very low consumption of plankton by farmed bivalves compared to planktonic fluxes. When considering the whole lagoon, the farmed oysters (Pinctada margaritifera) and associated bivalves (Pinctada maculata) consume 0.24% of the planktonic gross primary production. In addition, the consumption by natural populations of the main benthic bivalves in this lagoon (Chama iostoma, Arca ventricosa, Pinctada margaritifera and Pinctada maculata) is also low compared to the high planktonic primary production (4.1%). The oyster farming in this lagoon is thus very far from being food-limited.

The characteristics of the phytoplankton of Takapoto Atoll are reviewed from the studies conducted between 1974 and 1998. These studies mainly concerned the biomass and primary production of phytoplankton while the taxonomic composition received far less attention. The mean biomass is 0.2–0.3 μg chl a·L–1. The phytoplankton is homogeneously distributed on a year scale although an higher biomass (0.8 μg chl a·L–1) may temporarily exist in the south part of the atoll under moderate tradewinds or calm weather. The gross primary production reached 0.8 g C·m–2·day–1 whereas the net primary production is estimated to be 0.7 g C·m–2·day–1. No significant long-term changes of the biomass or primary production can be observed. The implications of this stability are discussed in the context of the mother-of-pearl mariculture. Size fractionated samples revealed the predominance of picophytoplankton which represented more than 60% of the phytoplankton biomass and achieved > 50% of the primary production. The taxonomic composition observed in 1974 showed the predominance of three algal groups: diatoms, dinoflagellates and coccolithophorids. The diatoms were the most diversified group, while the dinoflagellates were the most abundant. No further examination of the phytoplankton was undertaken until 1996. At that time, the microplankton was quite absent, and the phytoplankton communities were dominated by the pico- and nanophytoplankton, mainly chlorophytes, prymnesiophytes and dinoflagellates. This drastic shift of the phytoplankton communities towards smaller size is not clearly understood. It emphasises the need of taxonomic studies for a better understanding of the lagoon ecology.

Several studies have found that, since 1975 at least, the atoll lagoon of Takapoto exhibits high salinities and high planktonic chlorophyll concentrations. We used observations gathered in Takapoto and 23 other atoll lagoons between 1995 and 2000 to study the water renewal rate (determined by different approaches) of Takapoto relative to that of the other lagoons. This rate is controlled by reef rim aperture, which is abnormally low in Takapoto. Across this set of lagoons, average water residence time was correlated with salinity, and with two descriptors of water column biological properties, chlorophyll and dissolved organic matter contents. In parallel to these bulk quantitative variations, qualitative variations were found inside this trophy gradient, concerning the size of primary producers (proportion of cells > 2.7 μm) and the composition of seston (relative phosphorus content). Takapoto Lagoon fits into a gradient of water residence time that controls the overall trophic web organization.

A programme of zoosanitary survey of the populations of black-lip pearl oyster (P. margaritifera) has been developed in French Polynesia during 1996 and 1997. Based on histological and ultrastructural examinations, the study of pearl oysters sampled in several pearl farms from the Society Islands, Tuamotu Atolls and Gambier Archipelago, has been particularly turned to enzootic pathological problems. Particular attention has been given to the shell disease and to the necrosis of the adductor muscle, symptoms that had accompanied the mass mortality in 1985.Virus–like particles, about 40 nm in diameter, were detected in membrane bound vesicles from the necrosized muscle tissue. A new Rickettsia-like organism found in epithelial cells of the digestive tubules was described, while parasites previously reported, such as cestodes and gregarines, were recognized in some animals. Apart from the pathology, a thorough study of ‘parasite-like bodies’ discovered in the pearl sack epithelium showed dysfunction in the periostracal secretion.