There is growing interest in bio-economic models as tools for understanding pathways of fishery behaviour, in order to assess the impact on natural resources. Based on ‘FishRent’, a modelling approach is presented that integrates economics of the fleet, the impact of fishing on stock development and their spatio-temporal interplay. The simulation of species seasonal movements in combination with both observed values and stochastic recruitment allowed analysing the economic response of fleet segments to changes in stock distribution and development. Optimisation of net profits determines the effort adjustment and spatial allocation of fleet segments, which in turn affects the level of catch rates. Effort tended to concentrate where fish abundance was high, but also where fishing costs were low. In simulations with the current management plan spawning stock of North Sea saithe (Pollachius virens) declined below its precautionary reference point. In response fishing far from home ports became expensive and 40% of the initial effort was shifted to areas closer to home ports, but as areas of high fish concentrations were located by the modelled fleet segments catch rates remained high. Changes in seasonal/annual stock distribution, the stock decline and costs influenced the change in fishing effort distributions leading to overestimated catch per unit of effort values that masked the decline of stock abundance.

In 2009, the European Commission set restricted fishing areas northwest of the British Isles to protect deep-sea vulnerable marine ecosystems and fish stocks. Two protection areas which, historically, have been targeted by fisheries directed at blue ling (Molva dypterygia), were defined. The study aims to assess the effectiveness of restricting fishing activity within the protection areas during the blue ling spawning period (March–May) and to determine whether the existing boundaries are fit for purpose. Estimations of the spatial apportionment of blue ling landings within and outside the protection areas are achieved by combining low-resolution data from fishing vessel logbook entries with higher-resolution vessel monitoring system (VMS) data. High-resolution spatial apportionment of blue ling landings is limited by a lack of high-resolution logbook data, and certain assumptions need to be made on whether vessels are engaging in fishing activity at any individual VMS data point, based on vessel speed and types of fishing gear available. Although current measures appear to have influenced fishing activity in the vicinity of the protection areas, more evidence is needed for a robust evaluation of their effectiveness in protecting blue ling. Recommendations are made for improvements in data collection methods and data availability for research in support of monitoring, assessment and delineation of marine protection boundaries.

The aim of this project was to evaluate the impact of probiotic (Phaeobacter gallaeciensis, X34 strain) treatment on the complete development (from veliger to metamorphosis) of Pecten maximus larvae in the context of a bacterial challenge and in conditions more representative of hatchery practices. To that effect, the present study was divided into two main steps. In the first, we used in vitro analyses (antibiograms and microplate assays) to validate the inhibition abilities of X34 on the growth of four Vibrio pathogen species. During the second step, we added pathogens (Vibrio pectenicida) into rearing tanks after two weeks of pre-treatment with the probiotic and then followed the larval development of Pecten maximus through the monitoring of survival rates, shell lengths and metamorphosis ability. Moreover, antioxidant (catalase and superoxide dismutase) and lipids peroxidation activities were also measured after bacterial challenge in order to evaluate the physiological response of larvae to pathogen exposition. Our results indicated an activation of the two selected antioxidant enzymes after bacterial challenge, but the increase was significantly lower in probiotic treated larvae. At the end of the experiment, the strain X34 treatment prevented a mass mortality event and showed a significant increase in the number of individuals reaching competence, when compared to untreated larvae.

To develop selection programs for the great scallop, artificial reproduction of the species needs to be improved by gamete cryobanking. Here, a set of four experiments was designed in order to define the basic elements of a cryopreservation protocol for scallop sperm, including extender composition (experiment 1), cryoprotectant selection (2), cooling rate (3), and assessment of the effects of sperm cryopreservation on sperm motility and fertilization capacity (4). Sperm was collected after serotonin injection (100 μl of a 10-mM solution) and frozen in 500-μl straws. For the first three experiments, the percentage of motile fresh sperm (80 ± 4%, mean ± SEM) was significantly higher than that observed for thawed sperm (11 ± 2%). During the first experiment, no significant difference of the percentage of motile thawed sperm was observed among the three saline extenders tested: seawater, calcium-free Hanks’ balanced salt solution (Ca-free HBSS) and DCSB4 solution. However, a complementary experiment (2) showed that a significantly higher percentage of motile thawed sperm was recorded using DCSB4 than with Ca-free HBSS as an extender. During the third experiment, sperm motility was higher when using polyethylene glycol (10% PEG) as a cryoprotectant, than when using dimethyl sulphoxide, DMSO (10 and 20%), methanol (10%) and ethylene glycol (10% EG). A higher D-larval rate was obtained during the fourth experiment, using fresh sperm than thawed sperm, and using a 500:1 sperm-to-egg ratio compared with a 50:1 ratio. There is some evidence of inter-individual variations in sperm tolerance to cryopreservation. In conclusion, the highest survival of great scallop sperm after thawing was recorded using the following conditions: DCSB4 extender (1:3 vol/vol sperm to extender dilution), PEG cryoprotectant (10%) and straws maintained at 5.5 cm above liquid nitrogen.

Though Crassostrea oysters have been distributed and cultured worldwide, their taxonomy is still difficult and often inaccurately determined because of the high level of phenotypic plasticity of the shell morphology. With the help of mitochondrial DNA, two novel species of Crassostrea oysters (C. hongkongensis and C. zhanjiangensis) were recently recognized, which suggests that the species diversity of Indo-Pacific oysters could be underestimated. Utilizing a combination of shell characteristics, a molecular marker (mitochondrial cox1 gene) and phylogenetic analysis, we identified a mangrove-distributed novel Crassostrea oyster species, C. dianbaiensis. The shell morphology of the new species is phenoplastic, as seen in other congeneric oysters. The left valve of this oyster is usually deeply cupped, and the right valve is usually slightly concave. The body size is classified as medium and is approximately 5–10 cm in height (estimated from 20 individuals). One distinctive feature of C. dianbaiensis is that the adductor muscle scars vary in color from dark purple to white in the right valve, but always appear white in the left valve. Based on the cox1 phylogenetic tree, C. dianbaiensis is inferred to be a new member of the Southeast Asia tropical oysters and is believed to be the northernmost distributed species among the tropical oysters. This study provided basal information for future studies, which are necessary to better understand the faunal characteristics, population and roles of this oyster in nearshore ecosystems.