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Published online by Cambridge University Press: 05 March 2012
General database configuration
Sequence database support
EMBOSS provides excellent database support. All the common sequence formats you are likely to come across are supported. See the EMBOSS User’s Guide.
A variety of indexing and access methods are supported. For example, EMBL entries can be read from :
A non-indexed EMBL-format flatfile held locally
Original EMBL flatfiles using the CD-ROM, Staden or EMBOSS indexes
Original EMBL flatfiles using local SRS indexes
A file indexed for use with BLAST version 2 indexes
GCG database format
A query to the EMBL-EBI DBFETCH service
A query to the EMBL-EBI web server
A query to the Entrez web server
A query to any MRS web server
A query to any SRS web server (local or remote)
A relational database such as Sybase or Oracle by calling a local application.
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