The sea urchin Arbacia spatuligera is an echinoid distributed in the Southeastern Pacific Ocean from Peru to Chile. This species was previously reported from the subtidal zone with a bathymetric distribution up to 30 m depth. In this work, 128 individuals were found in four mesophotic reefs along the central coast off Chile using closed-circuit rebreathers in technical diving at higher depths than previously, ranging from 36 to 63 m in depth. A population exhibits unexpected morphological characters, requiring an emended diagnosis and description of a new morphotype for A. spatuligera. These morphological traits are further discussed as potential ecophenotypic adaptations.