The poly(A)-limiting element (PLE) is a cis-acting
sequence that acts to limit poly(A) tail length on pre-mRNA
to <20 nt. Functional PLEs are present in a number of
genes, underscoring the generality of this control mechanism.
The current study sought to define further the position
requirements for poly(A) length regulation and the core
sequence that comprises a PLE. Increasing the spacing between
the PLE and the upstream 3′ splice site or between
the PLE and the downstream AAUAAA had no effect on poly(A)
length control. However, moving the PLE from the terminal
exon to either an upstream exon or intron eliminated poly(A)
length control. Poly(A) length control was further evaluated
using a battery of constructs in which the PLE was maintained
in the terminal exon, but where upstream introns were either
deleted, modified, or replaced with a polypyrimidine tract.
Poly(A) length control was retained in all cases, indicating
that the key feature is the presence of the PLE in the
terminal exon. A battery of mutations demonstrated the
importance of the 5′ pyrimidine-rich portion of the
element. Finally, UV crosslinking experiments identified
an ∼62-kDa protein in Hela nuclear extract that binds
to a wild-type 23-nt PLE RNA oligonucleotides but not to
a mutated nonfunctional form of the element.