Let X be any set and P(X) the set of all partial transformations defined on X, that is, all functions α:A→B where A,B are subsets of X. Then P(X) is a semigroup under composition. Let Y be a subset of X. Recently, Fernandes and Sanwong defined PT(X,Y )={α∈P(X):Xα⊆Y } and defined I(X,Y ) to be the set of all injective transformations in PT(X,Y ) . Hence PT(X,Y ) and I(X,Y ) are subsemigroups of P(X) . In this paper, we study properties of the so-called natural partial order ≤ on PT(X,Y ) and I(X,Y ) in terms of domains, images and kernels, compare ≤ with the subset order, characterise the meet and join of these two orders, then find elements of PT(X,Y ) and I(X,Y ) which are compatible. Also, the minimal and maximal elements are described.