Mitochondrial (mt) DNA D-loop heterogeneity, haplotype distribution and possible sub-population structures within the relevant populations are important for DNA-based traceability. To gain insight into this distribution, we compared 1515 Bos taurus mtDNA D-loop sequences available from GenBank to 219 sequences that we sequenced de novo. A pronounced ambiguous trace typical of C-track length heteroplasmy was encountered in 5% of the samples, which were excluded from the analysis. Previously undescribed mutations and haplotypes were observed in 6% and 63% of the sequences, respectively. B. taurus haplotypes divided into the taurus, indicus and grunniens types and 302 variable sites formed the 858 taurus haplotypes detected. Fifty-five sites displayed a complex level of variation. As each level represents an independent mutation event, a total of 399 mutations were traced, which could potentially explain independent formation of less than half (47%) of the haplotypes encountered: most haplotypes were derived from different combinations of these mutations. We suggest that a mutational hotspot may explain these results and discuss the usefulness of mtDNA for identity and maternity assurance.

Several crab species are important fishery resources in Brazil and their overexploitation has lead to severe population declines in some regions. The management of populations of these species should take into account the degree of gene flow among populations in different estuaries. The goal of the present study is to assess the degree of geographical structure in the genetic diversity of the blue land crab, Cardisoma guanhumi, along the Brazilian coast. A fragment of the control region of the mtDNA (750 bp) was sequenced for 95 specimens collected across 5 Brazilian states. Analyses using F-statistics failed to indicate any evidence of geographical structure, a result that was corroborated by a nested clade analysis of the same dataset. Mismatch distribution analyses indicated that populations of the blue land crab have experienced an expansion during their recent evolutionary past. The obtained results are similar to those recently described for another sympatric crab, Ucides cordatus, particularly with respect to the extensive degree of gene flow. However, populations of C. guanhumi seem to be older than those of U. cordatus and do not show the north–south expansion found in that species.