Mangroves, tidal marshes and seagrasses have experienced extensive historical reduction in extent due to direct and indirect effects of anthropogenic land use change. Habitat loss has contributed carbon emissions and led to foregone opportunities for carbon sequestration, which are disproportionately large due to high ‘blue carbon’ stocks and sequestration rates in these coastal ecosystems. As such, there has been a rapid increase in interest in using coastal habitat restoration as a climate change mitigation tool. This review shows that restoration efforts are able to substantially increase blue carbon stocks, while also having a positive impact on various gaseous fluxes. However, blue carbon increases are spatially variable, due to biophysical factors such as climate and geomorphic setting. While there are potentially hundreds of thousands of hectares of land that may be biophysically suitable for restoration, these activities are still often conducted at small scales and with mixed success. Maximizing potential carbon gains through blue carbon restoration will require managers and coastal planners to overcome the myriad socioeconomic and governance constraints related to land tenure, legislation, target setting and cost, which often push restoration projects into locations that are biophysically unsuitable for plant colonization.

We measured the concentrations of antifouling biocides in sediment, mangrove leaves and seagrasses from Merambong and Tinggi Island, Johor, Malaysia to evaluate their contamination levels. Although the concentrations of tributyltin (TBT) in mangrove leaves in Merambong in 2013 were significantly lower than those in 2012, the Sea-Nine 211 concentration in 2013 was significantly higher than that in 2012, suggesting that the use of antifouling biocides changed from TBT to Sea-Nine 211. The concentration of each BT (butyltin) and PT (phenyltin) in the mangrove area was significantly higher than the corresponding concentration in the seagrass area in Merambong, but the concentrations of Sea-Nine 211, diuron, chlorothalonil, Irgarol 1051 and M1 in seagrasses were significantly higher than those in mangrove leaves. There were differences in the accumulation profiles of OTs (organotins) and alternative biocides between the seagrass shoots and roots. The concentration of OTs in the seagrass roots was almost the same or higher than those in the shoots, whereas those of alternative biocides shows the opposite pattern to the OTs. Significant high relationships were observed between stable carbon isotope (δ13C) and OTs, Sea-Nine 211 and Irgarols in mangrove leaves. The concentrations of these compounds increased along with the δ13C values of the mangroves. These results suggest that mangroves take up the bicarbonate ions and nutrients in sediment and/or seawater through their roots, along with OTs, Sea-Nine 211 and Irgarols which were accumulated in sediment.

Coasts are undeniably regions of critical importance for a range of environmental, sociocultural, and economic reasons. Yet they are also areas of intense anthropogenic impact and are particularly susceptible to climate change-related concerns. As such, it is imperative that we have the means to monitor and manage them in a sustainable manner. Drone technology has emerged as providing a unique value proposition in coastal environments to support data-driven monitoring and management decisions. With their highly detailed data capture capability, drones are particularly well suited to map the spatial heterogeneity, structural complexity, and temporally dynamic nature of coasts. Further, they are readily accessible to coastal populations and can promote grassroots action by the very people whose lives and livelihoods the coasts support. Herein, we cover several of the leading innovations in using aerial drones to map coastal ecosystems. We then consider how general trends and technology projections including artificial intelligence, as well as cloud and edge computing offer opportunities for the future of drone mapping and monitoring in a coastal context. While the challenge of change is inevitable, embracing the opportunities it provides will allow us to better understand and live sustainably with and within our coastal ecosystems.

Hydrogen sulfide (H2S, “sulfide”) is a naturally occurring component of the marine sediment. Eutrophication of coastal waters, however, can lead to an excess of sulfide production that can prove toxic to seagrasses. We used stable sulfur isotope ratio (δ34S) measurements to assess sulfide intrusion in the seagrass Halodule wrightii, a semi-tropical species found throughout the Gulf of Mexico, Caribbean Sea, and both western and eastern Atlantic coasts. We found a gradient in δ34S values (−5.58 ± 0.54‰+13.58 ± 0.30‰) from roots to leaves, in accordance with prior observations and those from other species. The results may also represent the first values reported for H. wrightii rhizome tissue. The presence of sulfide-derived sulfur in varying proportions (15–55%) among leaf, rhizome, and root tissues suggests H. wrightii is able to assimilate sedimentary H2S into non-toxic forms that constitute a significant portion of the plant’s total sulfur content.

This study intends to reliably estimate the general status of the benthic and the epiphytic foraminifera community related to each studied seagrass ecosystem (Posidonia oceanica, Cymodocea nodosa and Halophila stipulacea) distributed in different shallow sites in the coastal archipelago of Kerkennah (Gulf of Gabes, Tunisia) during winter. We were able to first sort and subsequently identify some characteristics conditioning their behaviour. Twenty-four species of foraminifera were encountered. Among them, three epiphytic species identified on these seagrass leaves had a much lower abundance than those in the sediment. We were interested in highlighting the foraminiferal community related to Halophila stipulacea, since this seagrass species is newly introduced into the Mediterranean sea. Thanks to the statistical study, we were able to identify the favourable habitat for epiphytic and benthic foraminifera among the three seagrass ecosystems. A correlation between the identified foraminifera species and some environmental parameters was addressed using a variety of software.

Animals develop behavioural strategies throughout life to improve their survival in nature. Juvenile activity and behaviour of the commercial tropical sea cucumber Stichopus cf. horrens were examined considering factors that may influence survival at this critical developmental stage. Wild juveniles were observed in situ to describe diel activity and movement. Wild and hatchery-reared juveniles were observed in the laboratory to evaluate the influence of different light-dark cycles and microhabitats on feeding and sheltering behaviour. All juveniles (4–54 g) displayed a distinct nocturnal activity pattern both in the field and laboratory. Nocturnal activity was strongly associated with feeding and locomotion. Wild and hatchery-reared juveniles were most active at night, displayed intermediate activity during twilight, and minimal to no activity during daytime. Movement rates of wild juveniles in situ were significantly influenced by time and size to a lesser extent. Under constant light and constant dark for 48 h, juvenile feeding rhythm was endogenously controlled and strongly entrained to natural light-dark cycles. Sheltering was directly affected by light and linked to strong phototactic and thigmotactic reflexes. Juveniles preferred vegetation as shelter compared to coral, sand or open space, and showed equal preference for seagrass and macroalgae. Deviations in behaviour of hatchery-reared juveniles under laboratory conditions indicate some degree of acclimation to an artificial environment with minimal threats and a decreased sensitivity to light. The implications of nocturnal feeding, light-induced sheltering, shelter preferences and acclimation to artificial conditions are discussed in relation to juvenile survival in nature and potential restocking of the species.

Belize contains important habitat for Antillean manatees (Trichechus manatus manatus) and provides refuge for the highest known population density of this subspecies. As these animals face impending threats, knowledge of their dietary habits can be used to interpret resource utilization. The contents of 13 mouth, six digestive tract (stomach, duodenum and colon) and 124 faecal samples were microscopically examined using a modified point technique detection protocol to identify key plant species consumed by manatees at two important aggregation sites in Belize: Southern Lagoon and the Drowned Cayes. Overall, 15 different items were identified in samples from manatees in Belize. Five species of seagrasses (Halodule wrightii, Thalassia testudinum, Ruppia maritima, Syringodium filiforme and Halophila sp.) made up the highest percentage of items. The red mangrove (Rhizophora mangle) was also identified as an important food item. Algae (Ulva sp., Chara sp., Lyngbya sp.) and invertebrates (sponges and diatoms) were also consumed. Variation in the percentage of seagrasses, other vascular plants and algae consumption was analysed as a 4-factor analysis of variance (ANOVA) with main effects and interactions for locality, sex, size classification and season. While sex and season did not influence diet composition, differences for locality and size classification were observed. These results suggest that analysis of diet composition of Antillean manatees may help to determine critical habitat and use of associated food resources which, in turn, can be used to aid conservation efforts in Belize.

This study recognizes six species of onuphid polychaetes associated with the Cymodocea nodosa meadows of the Canary Islands. Of these, three species of the genus Aponuphis, A. bilineata, A. brementi and A. ornata have been previously reported from the eastern North Atlantic, whilst A. willsiei was only known from the western Mediterranean Sea. We describe two new species: Onuphis erici sp. nov. and Kinbergonuphis sanmartini sp. nov., of which the latter represents the first discovery of the genus Kinbergonuphis in the eastern North Atlantic Ocean. Furthermore, we present brief notes on their ontogeny and ecology and remarks on the presence and microstructure of lateral organs observed in one of the new species.

Light adaptive strategies were studied in a comparative analysis of the congeneric seagrass species Zostera muelleri and Zostera marina at two case study areas in New Zealand and Germany. Surveys in intertidal seagrass meadows were conducted from pre-dawn until sunset on days when either low or high tide coincided with noon. The results show marked fluctuations of photophysiology (optimum and effective quantum yield, non-photochemical quenching, cycling of xanthophyll cycle (XC) pigments) over daily and tidal cycles. At both locations, we observed a near complete conversion (de-epoxidation) of violaxanthin to zeaxanthin at times with high irradiance and a rapid and complete re-epoxidation under subsequent lower light conditions. At the New Zealand site we also observed significantly larger XC-pigment pool sizes in seagrass leaves sampled in a week when low tide coincided with noon (larger daily fluence and higher maximum irradiance), compared with leaves sampled in a week when high tide was at noon. This dynamic adjustment of xanthophyll pool size has not been previously reported for intertidal seagrasses. It adds to our understanding of an important adaptive feature in a highly dynamic light environment and to the general ecology and adaptability of seagrasses.

Despite the current global decline in seagrass, sessile epifaunal invertebrates inhabiting seagrass ecosystems, particularly sponges and ascidians, have been poorly studied due to their taxonomic complexity. Understanding patterns of distribution of sessile epifaunal communities in seagrass meadows is an important precursor to determining the processes driving their distribution and species interactions. This study (1) identified the sponge and ascidian assemblage associated with Posidonia australis meadows and (2) determined distributional patterns of these invertebrates at a hierarchy of spatial scales in Jervis Bay, Australia. We used a fully nested design with transects distributed in the seagrass (10s m apart), two sites (100s m apart), and six locations (km apart). Within these transects, we recorded the abundance, volume, diversity and substratum used for attachment by sponges and ascidians. We encountered 20 sponge species and eight ascidian species; they were sporadically distributed in the seagrass meadows with high variability among the transects, sites and locations. A few sponge and ascidian species dominated the assemblage and were widespread across the largest spatial scale sampled. The remaining species were mostly rare and sparsely distributed. Sponges attached to a variety of substrata but most notably shells, P. australis and polychaete tubes. No obligate seagrass species were recorded although three species predominantly used P. australis as a substratum. These sponge species relying heavily on seagrass for their attachment are likely prone to disturbances impacting their host habitat. Examining the response of sessile epifauna to the degradation of their seagrass habitat remains a key challenge for the future.

The network of roots and rhizomes of seagrasses plays an important role in coastal ecosystems by anchoring the substrate firmly, controlling the biogeochemistry of the sediments and providing habitat for many infaunal organisms. The purpose of this study was to compare five seagrass communities in southern Thailand in terms of species composition, belowground biomass, redox potential and the abundance of the dominant bivalve Pillucina vietnamica. The communities of Halophila ovalis, Cymodocea rotundata, Thalassia hemprichii, H. ovalis with C. rotundata and C. rotundata with T. hemprichii were studied. Belowground biomass, redox potential, bivalve abundance and bivalve size differed among communities and depths (P < 0.05). The redox potential in vegetated areas was lower than in bare sand, showing that seagrass roots trapped more organic matter than did bare sand. The lowest redox potential was in a monospecific patch of the branching root species, C. rotundata. The abundance of P. vietnamica in vegetated areas was lower than in bare sand (P < 0.05). Pillucina vietnamica was relatively large in size in the monospecific stands of C. rotundata and T. hemprichii, where relatively high root biomass and belowground biomass, respectively, were found. Our results suggest that seagrass promotes anoxic conditions belowground by trapping sediment but could obstruct the burrowing activity of lucinids, as dense populations of lucinids occurred mainly in bare sand. However, seagrass also provided shelter for lucinids, as larger bivalves were found in seagrass areas. The interactions among belowground seagrass parts, the biogeochemistry of sediments and the lucinids are highly complex and merit further study.

The structural complexity of macrophytes that provide various microhabitats is related to local infaunal abundance and diversity. Seagrass is considered an ecosystem engineer that alters the benthic environment and enables certain distinct meiofauna to thrive in sediments. The effects of seagrass species in a mixed-species seagrass bed at Haikou, Taiwan were examined. Analysing quantitative samples obtained from patches of Thalassia hemprichii, Halodule uninervis, Halophila ovalis and adjacent unvegetated sediments inspected the community structures of meiofauna and marine nematodes. The abundance and diversity of crustaceans and nematodes were substantially higher in habitats in which seagrass grew than in those comprising unvegetated sediments. Both the compositions of higher meiofaunal taxa and nematode species were distinct between seagrass habitats and unvegetated areas. Several nematode species existed exclusively in patches of individual seagrass species, whereas no nematode specifically occurred in unvegetated areas. Regarding the trophic types of nematodes, non-selective deposit feeders were prevalent in the present study, whereas selective deposit feeders and epistrate feeders were relatively dominant in seagrass habitats. Sediments underneath various patches of seagrass species harbour dissimilar nematode communities, even with similar sediment parameters and at a small-scale distance.

Today, three-spined stickleback Gasterosteus aculeatus are the most abundant fish in the White Sea and are close to their historical maximum. Based on observations from 2011–2013, this study reports quantitative and qualitative characteristics of juvenile stickleback diet during periods of active feeding in coastal Zostera seagrass beds. The following planktonic taxa dominated stomach contents: copepods Temora longicornis and Microsetella norvegica, ciliophora Helicostomella subulata. Benthic organisms such as Oligochaetae and Orthocladiinae also played an important role, whereas the literature suggests they were once rare in marine stickleback diets. Consumption patterns depended on fish size, with the most pronounced diet shift taking place as juveniles reached a length of 15 mm, in late August. In larger juveniles the highest correlation between the abundance of food organisms in stomachs and in the sea was observed for Orthocladiinae, suggesting that they are the preferred food. Overall, changes in diet followed changes in the abundance of available food organisms, but food selectivity analysis of planktonic organisms showed that M. norvegica were actively selected by juveniles.

Epifaunal invertebrates are sensitive to changes in the identity of the dominant host plant, so assessing differences in the structure of epifaunal assemblages is particularly pertinent in areas where seagrasses have been replaced by alternative vegetation (e.g. green seaweeds). In this study, we aimed to compare the diversity, abundance and structure of epifaunal assemblages, particularly amphipods, between meadows dominated by the seagrass Cymodocea nodosa and the green rhizophytic algae Caulerpa prolifera on shallow soft bottoms of Gran Canaria Island, determining whether patterns were temporally consistent between two times. The epifaunal assemblage structure (abundance and composition) consistently differed between both plants, those assemblages associated with C. prolifera-dominated beds being more diverse and abundant relative to C. nodosa meadows. Amphipods constituted ~70% of total crustaceans for the overall study, including 37 species belonging to 16 families. The amphipod abundance was ~3 times larger in C. prolifera-dominated beds than in C. nodosa meadows. We detected species-specific affinities; for example, Microdeutopus stationis, Dexamine spinosa, Aora spinicornis, Ischyrocerus inexpectatus and Apherusa bispinosa were more abundant in C. prolifera-dominated beds; while the caprellid Mantacaprella macaronensis dominated in C. nodosa meadows. However, some species, such as Pseudoprotella phasma and Ampithoe ramondi, were found in both habitats with varying abundances between times.

This study investigated whether associated meiobenthic communities, especially harpacticoid copepods, differed amongst habitats. Five pre-defined habitats within and next to the Posidonia oceanica seagrass meadow were sampled: living seagrass canopy leaves (LL), small (SMF) and large (LMF) macrophytodetritus fragment accumulations and sand, bare (BS) and covered (CS). The highest meiofauna abundances were recorded in the BS for the core sampled habitats (BS, CS, SMF and LMF) and in the LMF for seagrass material habitats (SMF, LMF and LL). Harpacticoid copepods were the most abundant taxon in all habitats. The assemblage composition at copepod family level showed two distinct habitats clusters: a leaf (LMF and LL) and a sediment cluster (BS, CS and SMF). Subsequently, stable isotope analyses were conducted to analyse the relationship between copepods and their potential food sources in seagrass material habitats. Based on δ13C isotopic analyses and SIAR mixing model, harpacticoid copepods relied for 70% on epiphytes and for 30% on P. oceanica leaf material in the LMF and LL habitats.

The first list of epiphytic diatom species on the seagrass Thalassia testudinum from the Yalahau lagoon area in the Mexican Caribbean is given. One hundred and seven diatom taxa living on T. testudinum were identified including species and varieties. Nine taxa are new records for Mexico. The Bacillariophyceae with 87 taxa were the most diverse group. The most abundant taxa were: Cocconeis lineata, Mastogloia crucicula var. crucicula, Cocconeis thalassiana, Cocconeis scutellum var. scutellum and Mastogloia ovata, representing approximately 75% of the total valve count (N = 1527). Yalahau lagoon samples from site 1 yielded a high number of rare taxa. Species richness (S), diversity (H′, 1-λ) and equitability (J′) for the lagoon were lower than for Cabo Catoche (site 2). Based on presence/absence of species, the measured similarity (60%) suggests that the diatom assemblages growing on T. testudinum in the two localities are different.

The distribution and composition of molluscan assemblages of seagrass beds in the Ensenada de O Grove (north-western Spain), are described in this paper. The studied bottoms were mostly muddy and colonized predominantly by Zostera marina L., Z. noltei Hornemann, or by both species. Molluscan fauna was dominated by gastropods and bivalves, in terms of both species richness and abundance. A total of 7641 individuals belonging to 68 taxa was identified. The most abundant species were the gastropods Peringia ulvae, Retusa truncatula and Calyptraea chinensis and the bivalves Abra alba, Loripes lucinalis and Kurtiella bidentata. Cluster and multidimensional scaling analyses based on Bray–Curtis similarity coefficient showed two distinct faunal assemblages. Group A comprised intertidal sites colonized either by Z. noltei or by Z. marina and Z. noltei on muddy sand and sandy mud bottoms and subtidal sites exclusively colonized by Z. marina in the outer part of the inlet on muddy sand with the highest values of species richness and diversity. Group B consisted of sites characterized by low values of species diversity and a species composition typical of a ‘reduced Macoma community’. The sorting coefficient and the combination of gravel, sorting coefficient and carbonates content (BIOENV analyses) and the salinity of bottom water and depth (canonical correspondence analyses) were the most important abiotic variables in explaining the structure of the molluscan assemblage.

Seagrass beds are common features of coastal ecosystems worldwide, and their associated infauna are often more productive and diverse than in unvegetated habitats. Little is known, however, about the ecology of meiofaunal communities living in seagrass sediments. We compared the abundance and biomass of sediment meiofauna inside and outside an intertidal Zostera muelleri bed in southern New Zealand to assess the impact of seagrass cover on meiofaunal distribution. Nematode community structure, diversity, and feeding groups were also compared between habitats and sediment depths (0–2, 2–5 and 5–10 cm) to evaluate the effect of seagrass on nematode communities. Meiofaunal biomass was significantly higher inside than outside the Z. muelleri bed, but secondary productivity inside the bed is likely to have been limited by the availability of labile organic matter. There were significant differences in nematode community structure between unvegetated, sparsely vegetated, and densely vegetated sites (102 m scale), as well as between sediment depths (cm scale). No significant differences were found in depth-integrated (0–10 cm) nematode diversity between sites, but vertical gradients in diversity differed between vegetated and unvegetated sites. Epistrate feeders were the most common feeding group in unvegetated sediments whereas most feeding groups were common inside the seagrass bed. Findings from this study indicate that seagrass beds can have a marked impact on infaunal structure and function over small spatial scales through their effect on sediment characteristics and organic matter input. Some unexpected trends observed in the present study, i.e. low meiofaunal biomass at the vegetated sites, and lower abundance of copepods inside than outside the seagrass bed, suggest that the nature of seagrass–invertebrate interactions may depend on habitat characteristics and the identity and ecology of species considered.