Nuristan province, in north-east Afghanistan, holds a significant portion of the country's remaining forests, but because of the inaccessible terrain and the recent history of poor security little is known about the wildlife inhabiting these forests. We conducted transect surveys in central Nuristan and confirmed the presence of musk deer Moschus cupreus > 60 years after the last documented observation of the species in Afghanistan. We found that, in summer, musk deer inhabit remote alpine scrub on scattered rock outcrops and in upper fringes of closed coniferous forests at c. 3,000–3,500 m. They invariably use steep slopes (≥ 20°), which makes them difficult to approach. We built a data-driven geographical model, which predicted that suitable habitat for musk deer in Afghanistan extends over c. 1,300 km2 in the contiguous provinces of Nuristan (75.5%), Kunar (14.4%) and Laghman (10.1%). Although relatively vast, the area of habitat potentially available to musk deer in Afghanistan appears to be highly fragmented. Despite indications of unsustainable hunting, this Endangered species persists in Afghanistan and targeted conservation programmes are required to protect it and its forest habitat.

We used transect and camera-trap surveys and DNA identification of scat samples to provide the first update since 1977 of large mammals in the montane forests of the conflict-ridden province of Nuristan in eastern Afghanistan. Nuristan contains a range of habitats from oak Quercus spp. forests to treeless alpine steppes that historically hosted populations of markhor Capra falconeri, Asiatic black bear Ursus thibetanus, grey wolf Canis lupus and common leopard Panthera pardus, among others. Surveys conducted in 2006–2009 in an area of 1,100 km2 by the Wildlife Conservation Society confirmed the presence of some of these species, and also recorded the common palm civet Paradoxurus hermaphroditus, previously unknown from Afghanistan; this extends the westernmost boundary for this species. The most commonly recorded species, as determined by direct sightings, scat identification or camera-trap photographs, were the Indian crested porcupine Hystrix indica, red fox Vulpes vulpes and a canid (grey wolf or golden jackal Canis aureus). Despite indications of significant habitat loss and unsustainable hunting, globally important species persist in the area and targeted conservation programmes are required for the protection of these species, the forests they inhabit and the surrounding communities who depend on both for their survival.