We review the scientific literature, especially from the past decade, on the impacts of human activities on the Antarctic environment. A range of impacts has been identified at a variety of spatial and temporal scales. Chemical contamination and sewage disposal on the continent have been found to be long-lived. Contemporary sewage management practices at many coastal stations are insufficient to prevent local contamination but no introduction of non-indigenous organisms through this route has yet been demonstrated. Human activities, particularly construction and transport, have led to disturbances of flora and fauna. A small number of non-indigenous plant and animal species has become established, mostly on the northern Antarctic Peninsula and southern archipelagos of the Scotia Arc. There is little indication of recovery of overexploited fish stocks, and ramifications of fishing activity on bycatch species and the ecosystem could also be far-reaching. The Antarctic Treaty System and its instruments, in particular the Convention for the Conservation of Antarctic Marine Living Resources and the Environmental Protocol, provide a framework within which management of human activities take place. In the face of the continuing expansion of human activities in Antarctica, a more effective implementation of a wide range of measures is essential, in order to ensure comprehensive protection of the Antarctic environment, including its intrinsic, wilderness and scientific values which remains a fundamental principle of the Antarctic Treaty System. These measures include effective environmental impact assessments, long-term monitoring, mitigation measures for non-indigenous species, ecosystem-based management of living resources, and increased regulation of National Antarctic Programmes and tourism activities.

Ongoing climate variations in the Arctic and Antarctic pose an apparent paradox. In contrast to the large warming and loss of sea ice in the Arctic in recent decades, Antarctic temperatures and sea ice show little change except for the Antarctic Peninsula. However, model simulations indicate that the Arctic changes have been shaped largely by low-frequency variations of the atmospheric circulation, superimposed on a greenhouse warming that is apparent in model simulations when ensemble averages smooth out the circulation-driven variability of the late 20th century. By contrast, the Antarctic changes of recent decades appear to be shaped by ozone depletion and an associated strengthening of the southern annular mode of the atmospheric circulation. While the signature of greenhouse-driven change is projected to emerge from the natural variability during the present century, the emergence of a statistically significant greenhouse signal may be slower than in other regions. Models suggest that feedbacks from retreating sea ice will make autumn and winter the seasons of the earliest emergence of the greenhouse signal in both Polar Regions. Priorities for enhanced robustness of the Antarctic climate simulations are the inclusion of ozone chemistry and the realistic simulation of water vapour over the Antarctic Ice Sheet.

Uncertainty exists over the importance of Antarctic toothfish (Dissostichus mawsoni) as prey of top predators in the Ross Sea. In this paper we assess relative weight given to direct, observational evidence of prey taken, as opposed to indirect evidence from scat and biochemical analysis, and conclude that toothfish are important to Weddell seals (Leptonychotes weddellii). The seals eat only the flesh of large toothfish and therefore they are not detected in scat or stomach samples; biochemical samples have been taken from seal sub-populations where toothfish seldom occur. Using direct observations of non-breeding seals away from breeding haulouts in McMurdo Sound, 0.8–1.3 toothfish were taken per day. Based on these and other data, the non-breeding portion of the McMurdo Sound seal population, during spring and summer, consume about 52 tonnes of toothfish. Too many unknowns exist to estimate the non-trivial amount consumed by breeders. We discuss why reduced toothfish availability to Weddell seals, for energetic reasons, cannot be compensated by a switch to silverfish (Pleuragramma antarcticum) or squid. The Ross Sea toothfish fishery should be reduced including greater spatial management, with monitoring of Weddell seal populations by CCAMLR. Otherwise, probable cascades will lead to dramatic changes in the populations of charismatic megafauna.

This study contains the current list of the austral pycnogonids together with details of their depth range and distribution. To date 264 species have been recorded, accounting for 19.6% of the 1344 species recorded worldwide. One hundred and eight species are endemic to Antarctic waters, 62 to the sub-Antarctic, 63 are common in both regions, and 55 are circumpolar. The richest genus is Nymphon, with 67 species and the richest area is the Scotia Sea. Comparing species lists between the years 2000 and 2007 shows that increased expeditions with more sampling has increased the circumpolarity of species and decreased zonal endemicity. The benthic insular refuge hypothesis is proposed as an explanation for the southern distribution of the present pycnogonid fauna, with an origin in the Scotia Arc.

The Antarctic climate system varies on timescales from orbital, through millennial to sub-annual, and is closely coupled to other parts of the global climate system. We review these variations from the perspective of the geological and glaciological records and the recent historical period from which we have instrumental data (∼the last 50 years). We consider their consequences for the biosphere, and show how the latest numerical models project changes into the future, taking into account human actions in the form of the release of greenhouse gases and chlorofluorocarbons into the atmosphere. In doing so, we provide an essential Southern Hemisphere companion to the Arctic Climate Impact Assessment.

Determining the mass balance of the Greenland and Antarctic ice sheets (GIS and AIS) has long been a major challenge for polar science. But until recent advances in measurement technology, the uncertainty in ice sheet mass balance estimates was greater than any net contribution to sea level change. The Fourth Assessment Report of the Intergovernmental Panel on Climate Change (AR4) was able, for the first time, to conclude that, taken together, the GIS and AIS have probably been contributing to sea level rise over the period 1993–2003 at an average rate estimated at 0.4 mm yr-1. Since the cut-off date for work included in AR4, a number of further studies of the mass balance of GIS and AIS have been made using satellite altimetry, satellite gravity measurements and estimates of mass influx and discharge using a variety of techniques. Overall, these studies reinforce the conclusion that the ice sheets are contributing to present sea level rise, and suggest that the rate of loss from GIS has recently increased. The largest unknown in the projections of sea level rise over the next century is the potential for rapid dynamic collapse of ice sheets.

On Southern Ocean islands the effects of the house mouse on plants are not well understood. In particular, its influence at the landscape scale has largely been overlooked. To address this issue, we systematically mapped the distribution of a keystone, cushion plant species, Azorella selago, and mouse damage to it across Marion Island. Mouse damage was observed in a third of the sampled sites from sea level to 548 m a.s.l. Damage to individual cushions ranged from single burrows to the disintegration of entire cushions. Mouse damage was high in sites with low A. selago density, suggesting that in areas of low cushion density the impact of mice may be substantial. Moreover, it is not simply direct impacts on the A. selago population that are ecologically significant. Azorella selago cushions serve as nurse plants for many epiphyte species, so increasing the altitudinal range of a variety of them, and also house high densities of invertebrates especially in fellfield landscapes. In consequence, this study demonstrates that mice are having a significant, negative impact at the landscape scale on Marion Island, so adding to the growing list of species and ecosystem-level effects attributable to this invasive rodent.

We investigated nutrient composition and the potential for greenhouse gas production in Antarctic penguin guano, ornithogenic soils and seal colony soils through a laboratory incubation experiment. Total organic carbon contents ranged from 0.2–14.7% and total nitrogen contents ranged from 0.05–3.60% across all the samples. Penguin guano and the soils had the δ13Corg values of -28.4‰ to -22.8‰ and highly enriched δ15N values (8.28–35.51‰), indicating a rapid N cycling in local ecosystems. The mean CO2 and CH4 emission rates from penguin guano were significantly higher than those from the soils under aerobic or anaerobic conditions. The CO2-C/TOC rate indicated that the bioavailability of TOC was markedly higher in penguin guano than in the soils. These soils showed higher N2O emission rates under anaerobic conditions, indicating that denitrification may be the major process in N2O emission. The CO2 and CH4 emissions have a significant correlation with TOC in both penguin guano and the soils. Our results show that marine animal excreta are an important factor determining storage and composition of nutrients in coastal Antarctica, and that they may considerably affect current and future net fluxes of greenhouse gases in this region.

The biota of Antarctica is amazingly rich and highly endemic. The phylogenetics of notothenioid fishes has been extensively investigated through analyses of morphological characters, DNA sequences from mitochondrial genes, and single copy nuclear genes. These phylogenetic analyses have produced reasonably similar phylogenetic trees of notothenioids, however a number of phylogenetic questions remain. The nototheniid clade Trematomus is an example of a group where phylogenetic relationships remain unresolved. In this paper we revisit the phylogenetic relationships of Trematomus using both increased taxon sampling and an expanded dataset which includes DNA sequences from two mitochondrial genes (ND2 and 16S rRNA) and one single-copy nuclear gene (RPS7). The Bayesian phylogeny resulting from the analysis of the combined mitochondrial and nuclear gene datasets was well resolved and contained more interspecific nodes supported with significant Bayesian posteriors than either the mitochondrial or nuclear gene phylogenies alone. This demonstrates that the addition of nuclear gene sequence data to mitochondrial data can enhance phylogenetic resolution and increase node support. Additionally, the results of the combined mitochondrial and nuclear Bayesian analyses provide further support for the inclusion of species previously classified as Pagothenia and Cryothenia in Trematomus.

Adult male southern elephant seals instrumented in 2000 on King George Island (n = 13), travelled both to the north (n = 2) and to the east (n = 6) of the Antarctic Peninsula. Five males remained within 500 km of the island focusing movements in the Bransfield Strait and around the Antarctic Peninsula. Sea surface temperatures encountered by these animals showed little variation. While animal trajectories appeared unaffected by sea ice cover, areas of shallow depths were frequented. Three males moved as far as 75°S to the east of the Peninsula with maximum distances of more than 1500 km from King George Island. They travelled into the Weddell Sea along the western continental shelf break until they reached the region of the Filchner Trough outflow. Here the sea floor consists of canyons and ridges that support intensive mixing between the warm saline waters of the Weddell Gyre, the very cold outflow waters and ice shelf water at the Antarctic Slope Front. The need for re-instrumentation of adult males from King George Island is highlighted to investigate whether males continue to travel to similar areas and to obtain higher resolution data.

In order to establish the environmental status of areas close to Antarctic stations it is necessary to document levels of contaminants present in these sites. Several petrogenic and pyrogenic sources have been reported for polycyclic aromatic hydrocarbons (PAHs) in Antarctica. In this work, levels of 25 PAHs were measured in suspended particulate matter (SPM), surface sediment and marine organisms (fish Notothenia coriiceps, bivalve Laternula elliptica and gastropod Nacella concinna) from Potter Cove. Total PAH levels from SPM were low and similar in all sites studied (30–82 ng g-1 dw), phenanthrene being the dominant compound (68–84%). The exception was an area close to the wharf where significantly higher values of light PAHs such as naphthalene, acenaphthylene, 2,3,5-trimethylnaphthalene and fluorene were detected, indicating the influence of recent fuel spills. PAH concentrations in surface sediments were generally low (37–252 ng g-1 dw) except for two sites (1762 and 1908 ng g-1 dw) which suggested an accumulation process associated with the water circulation pattern. Liver tissue of N coriiceps presented significantly higher PAH levels (257 ng g-1 dw) compared with gonads. The pattern of individual compounds from substrates and organisms suggests a petrogenic and low-temperature combustion origin.

This study is the first published survey of diatom-environment relationships on sub-Antarctic Macquarie Island. Fifty-eight sites in 50 coastal and inland lakes were sampled for benthic diatoms and water chemistry. 208 diatom species from 34 genera were identified. Multivariate analyses indicated that the lakes were distributed along nutrient and conductivity gradients. Conductivity, pH, phosphate (SRP), silicate and temperature all explained independent portions of the variance in the diatom data. Transfer functions provide a quantitative basis for palaeolimnological studies of past climate change and human impacts, and can be used to establish baseline conditions for assessing the impacts of recent climate change and the introduction of non-native plants and animals. Statistically robust diatom transfer functions for conductivity, phosphate and silicate were developed, while pH and temperature transfer functions performed less well. The lower predictive abilities of the pH and temperature transfer functions probably reflect the broad pH tolerance range of diatoms on Macquarie Island and uneven distribution of lakes along the temperature gradient. This study contributes to understanding the current ecological distribution of Macquarie Island diatoms and provides transfer functions that will be applied in studies of diatoms in lake sediment cores to quantitatively reconstruct past environmental changes.

Despite several works that have documented patterns of diversity in deep sea organisms, trends of diversity and the processes responsible for such trends still remain unclear. To date very few studies have documented the effects of variables such as latitude and longitude in deep-sea organisms in the Antarctic region. We explored the spatial patterns of diversity of benthic gastropods and bivalves in an extensive region about 2200 km long and 500 km wide from the South Shetland Islands to the Bellingshausen Sea in West Antarctica. A total of 134 species from 54 sites was recorded. Alpha diversity and beta diversity (measured as Whittaker’s and Bray-Curtis similarity indices) were highly variable among areas. None of the species richness estimators measured as Sobs, Chao2, Jacknife1 and Jacknife2, stabilized towards asymptotic values in any area. The number of rare species was large with almost half of species represented by 1 or 2 individuals (41%) and most species (62%) restricted to 1 or 2 sites. The partial Mantel test revealed that similarity between sites increased with the decrease of depth differences, but not with horizontal separation.

The distribution of euphausiid larvae along the coast of Terre Adélie, Antarctica, was assessed using oblique tows of a double-framed bongo net at 38 stations during summer 2004. Larvae of Euphausia crystallorophias and Thysanoessa macrura were observed. For E. crystallorophias larvae, the calyptopis I stage was dominant along the coast, while the most commonly observed stage of T. macrura was the furcilia. The distribution of E. crystallorophias larvae were correlated with abiotic factors, including depth and sea surface salinity, whereas those of T. macrura larvae were correlated with biotic factors, especially chlorophyll a and nitrate. Developmental stages of both species increased in age from west to east in the survey area, with younger developmental stages (metanauplius and calyptopis I) in the western part of the region and older stages (calyptopis II and III and furcilia I to VI) in the eastern part near the Mertz Glacier Tongue (MGT). It is suggested that these patterns could be linked with the water circulation and wind: near the MGT gyres could concentrate all developmental stages of both species near the coast, while katabatic winds near Dumont d'Urville will promote larval advection seawards, with younger stages near the coast and older stages further offshore.