To explore trait variation, assess relative performance and establish association among yield and its associated traits in maize under organic system, 373 maize genotypes that consisted of landraces, open-pollinated varieties and single-cross hybrids were tested under organic management in Sikkim midhills. Data of 8 years (2009–2015 and 2019) for 12 agronomic traits viz., plant height, days to 50% tasselling, days to 50% silking, days to 75% dry husk, grain yield per ha, anthesis–silking interval, cob length, cob diameter, kernel rows per cob, kernels per row, number of cobs per plot and test weight were taken for analysis. Conventionally bred maize hybrids yielded 95.36% higher than the landraces and 58.60% higher than the open-pollinated varieties. Landraces displayed highest mean anthesis–silking interval of 7.18 days. In open-pollinated varieties, test weight showed a positive association with grain yield (0.37) while plant height (0.33) and kernels per row (0.34) were positively correlated to grain yield in case of landraces. Number of cobs per plot showed a very strong association with grain yield in hybrids (1.0). Kernels per cob and test weight contributed 24% to the variation in grain yield in open-pollinated varieties while anthesis–silking interval, days to maturity, number of cobs/plot, test weight and kernel per row accounted for 97% of the variation in grain yield in landraces. Grain yield in single-cross hybrids is contributed maximum (97%) by days to tasselling, silking, anthesis–silking interval, plant height and number of cobs per plot. The study indicates attaining high number of cobs per unit area along with emphasis on traits such as kernels per row, cob length and diameter for achieving higher yields in single-cross hybrids, selection of high test weight genotypes for open-pollinated varieties and emphasis on cob length, kernels per row and plant height for yield improvement in landraces.