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Transmission of severe acute respiratory coronavirus virus 2 (SARS-CoV-2), delta variant, between two fully vaccinated healthcare personnel

Published online by Cambridge University Press:  08 November 2021

L. Leigh Smith*
Affiliation:
Division of Infectious Diseases, Department of Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland
Aaron M. Milstone
Affiliation:
Division of Infectious Diseases, Department of Pediatrics, Johns Hopkins University School of Medicine, Baltimore, Maryland
Morgan Jibowu
Affiliation:
Department of Healthcare Epidemiology and Infection Control, Johns Hopkins Health System, Baltimore, Maryland
Chun Huai Luo
Affiliation:
Division of Medical Microbiology, Department of Pathology, Johns Hopkins Hospital, Baltimore, Maryland
C. Paul Morris
Affiliation:
Division of Medical Microbiology, Department of Pathology, Johns Hopkins Hospital, Baltimore, Maryland National Institute of Allergy and Infectious Disease, National Institutes of Health, Bethesda, Maryland
Heba H. Mostafa
Affiliation:
Division of Medical Microbiology, Department of Pathology, Johns Hopkins Hospital, Baltimore, Maryland
Lisa L. Maragakis
Affiliation:
Division of Infectious Diseases, Department of Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland
*
Author for correspondence: L. Leigh Smith, E-mail: [email protected]
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Abstract

Type
Letter to the Editor
Copyright
© The Author(s), 2021. Published by Cambridge University Press on behalf of The Society for Healthcare Epidemiology of America

To the Editor—Breakthrough severe acute respiratory coronavirus virus 2 (SARS-CoV-2) infection causing coronavirus disease 2019 (COVID-19) in fully vaccinated individuals occurs, and the frequency is increasing since the SARS-CoV-2 delta variant virus began circulating widely. 1 COVID-19 vaccines are highly effective at reducing SARS-CoV-2 shedding and transmission. Reference Regev-Yochay, Amit and Bergwerk2 The question of whether fully vaccinated people with breakthrough COVID-19 can transmit the SARS-CoV-2 virus to others is central to the debate around the need for mitigation efforts including masking and physical distancing for fully vaccinated individuals. We report apparent SARS-CoV-2 viral transmission between 2 fully vaccinated healthcare workers (HCW) in the setting of occupational unmasked close contact.

Methods

Healthcare personnel are screened daily and report COVID-19 symptoms to occupational health. Symptomatic HCW are tested for SARS-CoV-2 using a nasopharyngeal swab sample and the cobas SARS-CoV-2 assay (Roche, Basel, Switzerland). Contact tracing is conducted by interviewing personnel who test positive and their close contacts. Whole-genome sequencing is conducted for all SARS-CoV-2 viral isolates as previously described. Reference Thielen, Wohl and Mehoke3 Consensus sequences are analyzed with Clustal omega (ebi.ac.uk) and visualized with interactive tree of life (itol.embl.de).

Results

In late July, a fully vaccinated HCW (2 doses COVID-19 mRNA vaccine > 6 months earlier) developed new onset headache, cough, fatigue, muscle aches, and sore throat, progressing to fever and loss of taste and smell. At 4 days after symptom onset, a nasopharyngeal swab was positive for SARS-CoV-2 with cycle threshold (Ct) values of 25 and 26 for the E and ORF1ab genes, respectively. Risk factors for COVID-19 included international travel and interacting unmasked with others in the 2 weeks prior to symptom onset. Contact tracing identified 8 exposed HCW contacts; 7 were fully vaccinated and 1 was unvaccinated. No patient exposures occurred. One exposed, fully vaccinated HCW (2 doses COVID-19 mRNA vaccine > 6 months earlier) developed headache, fever, muscle aches, cough, fatigue, and chills 4 days after unmasked, close contact (<2 m or 6 feet) for ∼120 minutes while the index case was asymptomatic and ∼30 minutes while the index case was symptomatic during the infectious period. Both exposures involved eating together, unmasked, in a shared space. The exposed HCW tested positive for SARS-CoV-2 (Ct values of 17 and 18) 1 day after symptom onset and 4 days after the first exposure to the index HCW. The second HCW had no other known COVID-19 exposures but did interact unmasked with coworkers in the 2 weeks before testing positive. Whole-genome sequencing detected the SARS-CoV-2 delta variant (B.1.617.2). Genome alignment to 41 other delta variants isolated at our institution from April through July 2021 confirmed the relatedness of the 2 HCW viruses and their distinctiveness from other SARS-CoV-2 isolates (Fig. 1).

Fig. 1. Analysis of SARS-CoV-2 delta variant genomes from 2 fully vaccinated healthcare workers (HCWs) compared with other viral isolates from April through July 2021. (A) Relationship between the 2 HCW SARS-CoV-2 genomes to 41 other SARS-CoV-2 delta variants identified at Johns Hopkins Molecular Virology diagnostic laboratory and characterized by whole-genome sequencing. Genomes from the 2 HCWs are highlighted in red. (B) Genomic alignment of the 2 HCW genomes that shows the amino acid changes compared to the reference genome using Nextclade version 1.5.2 software. Amino acid changes are shown as colored vertical lines and dark gray bars indicate genomic gaps or deletions. The inset of the spike region shows the amino acid changes carried by the 2 HCW genomes including the S: T859I which was exclusively detected in these 2 genomes compared to the whole cohort.

Discussion

Recent CDC guidance says that fully vaccinated individuals may not need to wear masks indoors or practice physical distancing due to vaccine effectiveness and the low likelihood of a fully vaccinated person transmitting the virus to others. 4 The genetic and epidemiological data from our investigation of 2 HCW with breakthrough SARS-CoV-2 infection strongly suggest transmission of the SARS-CoV-2 virus delta variant from one fully vaccinated individual to another in the setting of unmasked close contact. Limitations include the fact that source of the infection for the first HCW is unknown; it remains possible that both HCWs were infected with SARS-CoV-2 from a common source or through separate exposures.

SARS-CoV-2 variants, such as the delta variant, can have higher viral loads, potentially increasing transmissibility and requiring enhanced public health measures. Reference Li, Wu and Nie5 This apparent transmission of SARS-CoV-2 from one fully vaccinated person to another demonstrates that masking and physical distancing remain vital infection prevention measures for fully vaccinated people while the SARS-CoV-2 virus is still evolving and circulating.

Acknowledgments

This report was made possible by the Johns Hopkins Clinical Microbiology Laboratory faculty and staff. The views expressed in this manuscript are those of the authors and do not necessarily represent the views of the National Institute of Biomedical Imaging and Bioengineering; the National Heart, Lung, and Blood Institute; the National Institutes of Health, or the US Department of Health and Human Services.

Financial support

H.H.M. is supported by the HIV Prevention Trials Network (HPTN) sponsored by the National Institute of Allergy and Infectious Diseases (NIAID), National Institute on Drug Abuse, National Institute of Mental Health, and Office of AIDS Research, of the NIH, DHHS (grant no. UM1 AI068613), the NIH RADx-Tech program (grant no. 3U54HL143541-02S2), National Institute of Health RADx-UP initiative (grant no. R01 DA045556-04S1), National Institute of Allergy and Infectious Diseases (Johns Hopkins Center of Excellence in Influenza Research and Surveillance grant no. HHSN272201400007C), Johns Hopkins University President’s Fund Research Response, the Johns Hopkins Department of Pathology, the Maryland Department of Health, and the CDC. Whole-genome sequencing was supported by funds through the CDC Broad Agency Announcement awards as a part of the SARS-CoV-2 Sequencing for Public Health Emergency Response, Epidemiology, and Surveillance (SPHERES) Initiative. This study was also made possible by efforts from our contact tracing team. A.M. was supported by the National Institute of Allergy and Infectious Diseases of the National Institutes of Health (grant no. K24AI141580).

Conflicts of interest

All authors report no conflicts of interest relevant to this article.

References

Team CC-VBCI. COVID-19 vaccine breakthrough infections reported to CDC—United States, January 1–April 30, 2021. Morb Mortal Wkly Rep 2021;70:792793.CrossRefGoogle Scholar
Regev-Yochay, G, Amit, S, Bergwerk, M, et al. Decreased infectivity following BNT162b2 vaccination: a prospective cohort study in Israel. Lancet Reg Health Eur 2021;7:100150.Google ScholarPubMed
Thielen, PM, Wohl, S, Mehoke, T, et al. Genomic diversity of SARS-CoV-2 during early introduction into the Baltimore–Washington metropolitan area. JCI Insight 2021. doi: 10.1172/jci.insight.144350.CrossRefGoogle ScholarPubMed
COVID-19: When you’ve been fully vaccinated; how to protect yourself and others. Centers for Disease Control and Prevention website. https://www.cdc.gov/coronavirus/2019-ncov/vaccines/fully-vaccinated.html. Updated July 27, 2021. Accessed July 27, 2021,Google Scholar
Li, Q, Wu, J, Nie, J, et al. The impact of mutations in SARS-CoV-2 spike on viral infectivity and antigenicity. Cell 2020;182:12841294.Google ScholarPubMed
Figure 0

Fig. 1. Analysis of SARS-CoV-2 delta variant genomes from 2 fully vaccinated healthcare workers (HCWs) compared with other viral isolates from April through July 2021. (A) Relationship between the 2 HCW SARS-CoV-2 genomes to 41 other SARS-CoV-2 delta variants identified at Johns Hopkins Molecular Virology diagnostic laboratory and characterized by whole-genome sequencing. Genomes from the 2 HCWs are highlighted in red. (B) Genomic alignment of the 2 HCW genomes that shows the amino acid changes compared to the reference genome using Nextclade version 1.5.2 software. Amino acid changes are shown as colored vertical lines and dark gray bars indicate genomic gaps or deletions. The inset of the spike region shows the amino acid changes carried by the 2 HCW genomes including the S: T859I which was exclusively detected in these 2 genomes compared to the whole cohort.