The response of soil microbial communities to soil quality changes is a sensitive indicator of soil ecosystem health. The current work investigated soil microbial communities under different fertilization treatments in a 31-year experiment using the phospholipid fatty acid (PLFA) profile method. The experiment consisted of five fertilization treatments: without fertilizer input (CK), chemical fertilizer alone (MF), rice (Oryza sativa L.) straw residue and chemical fertilizer (RF), low manure rate and chemical fertilizer (LOM), and high manure rate and chemical fertilizer (HOM). Soil samples were collected from the plough layer and results indicated that the content of PLFAs were increased in all fertilization treatments compared with the control. The iC15:0 fatty acids increased significantly in MF treatment but decreased in RF, LOM and HOM, while aC15:0 fatty acids increased in these three treatments. Principal component (PC) analysis was conducted to determine factors defining soil microbial community structure using the 21 PLFAs detected in all treatments: the first and second PCs explained 89.8% of the total variance. All unsaturated and cyclopropyl PLFAs except C12:0 and C15:0 were highly weighted on the first PC. The first and second PC also explained 87.1% of the total variance among all fertilization treatments. There was no difference in the first and second PC between RF and HOM treatments. The results indicated that long-term combined application of straw residue or organic manure with chemical fertilizer practices improved soil microbial community structure more than the mineral fertilizer treatment in double-cropped paddy fields in Southern China.

Phenological models for predicting the grapevine flowering were tested using phenological data of 15 grape varieties collected between 1990 and 2014 in Vinhos Verdes and Lisbon Portuguese wine regions. Three models were tested: Spring Warming (Growing Degree Days – GDD model), Spring Warming modified using a triangular function – GDD triangular and UniFORC model, which considers an exponential response curve to temperature. Model estimation was performed using data on two grape varieties (Loureiro and Fernão Pires), present in both regions. Three dates were tested for the beginning of heat unit accumulation (t0 date): budburst, 1 January and 1 September. The best overall date was budburst. Furthermore, for each model parameter, an intermediate range of values common for the studied regions was estimated and further optimized to obtain one model that could be used for a diverse range of grape varieties in both wine regions. External validation was performed using an independent data set from 13 grape varieties (seven red and six white), different from the two used in the estimation step. The results showed a high coefficient of determination (R2: 0.59–0.89), low Root Mean Square Error (RMSE: 3–7 days) and Mean Absolute Deviation (MAD: 2–6 days) between predicted and observed values. The UniFORC model overall performed slightly better than the two GDD models, presenting higher R2 (0.75) and lower RMSE (4.55) and MAD (3.60). The developed phenological models presented good accuracy when applied to several varieties in different regions and can be used as a predictor tool of flowering date in Portugal.

In the current work, humic acids (HAs) isolated from natural compost and unamended and amended soils in a medium-time field experiment were characterized to evaluate the effects of the amendment at rates of 124, 239 and 478 t/ha on their chemical, compositional and structural features. The impact of the application of compost on their properties was observed over 3 years. Humic acids were characterized using spectral methods and elemental analysis. Humic acid isolated from compost was predominantly aliphatic, with a larger content of nitrogen and low degree of aromaticity and humification. The typical maximum (280/345 nm) of HA obtained from compost lies within the T (tryptophan-like) region, which can be ascribed to proteinaceous organic materials. On the other hand, the HAs obtained from amended soil were mainly aromatic in character, with a larger distribution of oxygen-containing functional groups, molecular weight and greater aromaticity. Fluorophores of HAs obtained from amended soil lie within the C (humic-like) region with typical maxima centred in the range 430–450/500–540 nm, occurring usually in HAs isolated from soil, peat and lignite. According to ultra-violet/visible and Fourier-transform infrared (FTIR) spectroscopy, the larger oxygen contents of these HAs are associated with the substitution of aromatic rings by oxygen-containing functional groups such as carboxylic, hydroxyls and ethers. On the basis of FTIR spectra, it was shown that HAs obtained from amended soil 2 and 3 years after compost application were enriched by peptid, aromatic and polysaccharide compounds absorbing at 1540, 1515 and 1040/cm, respectively.

Chitooligosaccharides (COS) are multi-functional foods and nutrients and environmentally friendly biological abiotic-resistance inducing agents for plants. In the current study, the effects and possible mechanisms of COS on improving the cold resistance of rice (II YOU 1259) seedlings were investigated. Compared with the control, a COS pre-soaking treatment enhanced photosynthesis, reduced oxidation damage and led to accumulation of more osmotic regulation substances under chilling treatment. In addition, a novel Deg/HtrA family serine endopeptidase (DegQ) gene, related to COS enhanced rice cold resistance, was identified. Quantitative real-time polymerase chain reaction (qRT-PCR) analysis revealed that transcription of DegQ and psbA (D1 protein encoding gene) were up-regulated in a time-dependent manner by COS treatment under cold stress. With increasing expression of the D1 protein, chlorophyll b content was enhanced correspondingly. The current results suggest that COS could enhance cold stress tolerance of rice by repairing the photodamaged photosystem II, altering osmotic regulation and reducing oxidation damage.

The objective of the current study was to evaluate the effects of sugarcane and maize silage mixture v. maize silage in diets of Holstein cows and investigate performance under two environmental conditions. The cows were placed in freestalls, with individuals and stalls assigned to one of four treatments according to a replicated 4 × 4 Latin square design with 20-day periods divided into 11 days of adaptation (wash-out period) and 9 days of collection. Treatments were arranged in a 2 × 2 × 2 factorial design: total diets (maize silage (MS-based diet), the roughage mixture (RM-based diet, sugarcane : maize silage, 500 : 500 g/kg DM) plus concentrate); environmental conditions (with (W) and without (Wo) fan and nebulizers); and measurement times (09.40 and 14.00 h). The temperature and relative humidity was higher at 14.00 h and contributed to increased temperature-humidity index (76.6, W v. 75.9, Wo). Feed dry matter intake (DMI) was similar between diets (20.2 kg/day), but milk production and feed efficiency were lower with RM. Under W conditions, higher fat content and total solids of milk were observed with the RM-based diet, while crude protein and lactose were higher with MS. The Wo conditions increased body surface temperature (BS) in cows fed MS. The rectal temperature (RT) was higher with RM. The BS, RT and respiratory rate were higher at 14.00 h (34.9, 38.6 °C and 58.2 breaths/min) than at 09.40 h. The RM-based diet maintained DMI and milk composition, but not milk production. The use of the cooling system led to higher DMI and feed N efficiency use.

Cultivated pastures in southern China are being used to improve forage productivity and animal performance, but studies on grazing behaviour of goats in these cultivated pastures are still rare. In the current study, the grazing behaviour of Yunling black goats under low (5 goats/ha) and high (15 goats/ha) stocking rates (SRs) was evaluated. Data showed that the proportion of time goats spent on activities was: eating (0.59–0.87), ruminating (0.05–0.35), walking (0.03–0.06) and resting (0.01–0.03). Compared with low SR, goats spent more time eating and walking, and less time ruminating and resting under high SR. Goats had similar diet preferences under both SR and preferred to eat grasses (ryegrass and cocksfoot) more than a legume (white clover). The distribution of eating time on each forage species was more uniform under high v. low SR. Bites/step, bite weight and daily intake were greater under low than high SR. Results suggest that the SR affects grazing behaviour of goats on cultivated pasture, and identifying an optimal SR is critical for increasing bite weight and intake.

Keratin-associated proteins (KAPs) are constituents of wool and hair fibres and are believed to play an important role in determining the characteristics of the fibres. In the current study, a polymerase chain reaction-single stranded conformational polymorphism (PCR-SSCP) approach was used to screen for variation in the ovine KAP15-1 gene (KRTAP15-1). Four PCR-SSCP banding patterns, representing four different variants (named A to D), were detected. Four single nucleotide polymorphisms were found within the coding region and three of these were non-synonymous. The effect of this genetic variation on wool traits was investigated in 396 Merino × Southdown-cross sheep. Of the three variants found in these sheep (A, B and C), the presence of B was found to be associated with decreased wool yield, while C was associated with increased wool yield and decreased fibre diameter standard deviation. Sheep of genotype AC had a higher wool yield than those of genotype AA or AB.

Feeding phenol-containing plants to ruminants has the potential to mitigate both methane and ammonia formation. In the present study, mostly woody plants, such as the leaves of trees and shrubs, were tested for their influence on in vitro fermentation. The plants selected grow naturally under temperate climatic conditions, are usually available in bulk and do not directly compete with human food production. The detailed screening included whole plants or parts of different plant species reporting their effects on methane and/or ammonia formation. The plant materials were added at 167 mg/g of total dry matter (DM) to a common total mixed ration and incubated for 24 h with the Hohenheim gas test method. The results from in vitro fermentation were also used to determine the net energy of lactation and utilizable crude protein in the complete diets. Thirteen out of 18 test materials did not impair the organic matter (OM) digestibility of the diet. Ammonia concentrations decreased up to 35% when adding any of the test materials. Methane formation per unit of feed DM and per unit of digestible OM was lowered by 13 of the 18 test materials from 12 to 28% and 5 to 20%, respectively. In conclusion, a number of plant materials tested have the potential to mitigate ruminal ammonia and methane formation without adversely affecting digestibility. The leaves of Betula pendula, Corylus avellana, Ribes nigrum, Vitis vinifera and the aerial part of Geum urbanum were particularly promising in this respect.

A total of 1180 1-day-old Japanese quail (Coturnix japonica) chicks were used to investigate the effect of feathering rates on growth and slaughter traits. Feathering rates were classified based on the results of stepwise regression using numbers and lengths of both primaries and secondaries and tail length at 7 and 10 days of age as predictors. At 7 and 10 days old, number of primary feathers had phenotypically positive low correlations (rps) with body weight (BW), whereas number of secondaries had positive medium rps with BW at different ages. Lengths of primary, secondary and tail feathers had highly positive rps with BW traits at different ages. Results of stepwise multiple regressions indicated that BW at 14, 21 and 28 days of age can be predicted using lengths of secondary and tail feathers at 10 days old, number of secondaries at 7 days old and length of secondaries at 7 days old, respectively. Body weight at 35 days of age can be predicted using number of primaries, lengths of secondaries and tail at 10 days of age and number of secondaries at 7 days of age. Higher BWs were obtained in the fast-feathering class from 21 up to 35 days of age than in other groups, whereas the slow-feathering class had the lowest BW. Significant class differences were found for carcass weight, feather weight and dressing% favouring the fast- over the slow-feathering class. Therefore, early feathering rates improved BW at later ages and slaughter traits in Japanese quail.

The current study was conducted to evaluate the component composition, anti-nutritional factors, in vitro gas production (GP) and methane (CH4) production profiles of fruit by-products (pineapple pulp, mango seed kernels, banana and papaya peel, Moringa stenopetala and Moringa oleifera seeds) and leaves of root crops (sweet potato [Ipomoea batatas], cassava [Manihot esculenta], yam [Dioscorea abyssinica], enset [Ensete ventricosum] and samma [Urtica simensis]). Root crop leaves had high crude protein (CP) ranging from 211 to 318 g/kg dry matter (DM) in yam and samma, respectively. M. stenopetala seeds contained the highest CP (450 g/kg DM). Samma leaves were rich in calcium (58.6 g/kg DM) and iron (1186 mg/kg DM). Leaves of root crops had similar concentrations of essential amino acids with appreciable values. Total phenols were highest in mango seed kernels (158 g/kg DM). The asymptotic GP at 96 h incubation of pineapple pulp, papaya and banana peel was 397, 358 and 279 ml/g DM, respectively, and differed significantly from each other. Sweet potato and yam leaves produced 238 and 225 ml/g DM GP, respectively, being significantly higher than those of other root crops. CH4 production was significantly lowest in Moringa seeds, mango seed kernels and sweet potato leaves. In conclusion, fruit by-products have the potential as energy sources and root crop leaves as protein supplements for ruminant and non-ruminant animals. Moringa seeds, mango seed kernels and sweet potato leaves were identified as potential candidates in mitigating CH4 emissions in tropical livestock with animal-based experiments recommended to validate the in vitro findings.