Hostname: page-component-78c5997874-g7gxr Total loading time: 0 Render date: 2024-11-01T16:12:12.646Z Has data issue: false hasContentIssue false
  • English
  • Français

Evaluation of genetic diversity of Chinese native geese revealed by microsatellite markers

Published online by Cambridge University Press:  21 September 2007

H.-F. LI ,
K.-W. CHEN ,
N. YANG ,
W.-T. SONG  and
Q.-P. TANG
H.-F. LI*
Affiliation:
Institute of Poultry Science, Chinese Academy of Agriculture Science, Yangzhou 225003, P.R. China
K.-W. CHEN
Affiliation:
Institute of Poultry Science, Chinese Academy of Agriculture Science, Yangzhou 225003, P.R. China
N. YANG
Affiliation:
College of Animal Science and Technology, Chinese Agricultural University, Beijing 100094, P.R. China
W.-T. SONG
Affiliation:
Institute of Poultry Science, Chinese Academy of Agriculture Science, Yangzhou 225003, P.R. China
Q.-P. TANG
Affiliation:
Institute of Poultry Science, Chinese Academy of Agriculture Science, Yangzhou 225003, P.R. China
*
*Corresponding author: [email protected]
Get access

Abstract

China has an abundant and a wide variety of goose resources. The systemic estimation of genetic diversity of Chinese indigenous geese will provide an important scientific basis for the conservation and utilization of the resource. Twenty-six Chinese native goose populations were studied to estimate genetic diversity and genetic structure using 31-microsatellite markers. The genetic relationships between populations were analyzed in combination with their geographic distribution and origin of these breeds. According to the allele frequencies of 31-microsatellite loci, polymorphic information content (PIC), average heterozygosity (H) and DA genetic distances were calculated. Twenty-nine of the 31 microsatellite loci were medium or high polymorphism, so the 29 microsatellite markers were effective markers for analysis of genetic relationship among goose breeds. The average expected heterozygosity (HE) was between 0.501 and 0.705, the numeric order of which was consistent with that of PIC, and which reflected the strong genetic potential and strong adaptability. The topology of phylogenetic tree constructed from a Neighbour- Joining method based on DA genetic distances, showed general patterns of relationship and genetic structure among the populations studied. Topology analysis revealed that the twenty-six Chinese populations were divided into five groups and that the genetic relationships among the populations had obvious association with their historical relations and geographical distribution.

Keywords

goose breedsmicrosatellitegenetic diversitygenetic distance
Type
Review Article
Information
World's Poultry Science Journal , Volume 63 , Issue 3 , September 2007 , pp. 381 - 390
Copyright
Copyright © World's Poultry Science Association 2007

Access options

Get access to the full version of this content by using one of the access options below. (Log in options will check for institutional or personal access. Content may require purchase if you do not have access.)

References

BARKER, J.S.F. (1994) A global protocol for determining genetic distance among domestic livestock breeds. Proceedings 5th World Congress Genetics Applied Livestock Production Guelph, Canada. 21: 501–508.Google Scholar
CATHY, J.C. (2001) Microsatellite markers in Canada geese (Branta canadensis), Brief Communication. 173–175.Google Scholar
ISLAM, M.S., AHMED, A.S.I., AZAM, M.S. and ALAM, M.S. (2005) Genetic analysis of three river populations of catla catla (HAMILTON) using randomly amplified polymorphic DNA markers. Asian-Australian Journal Animal Science 18: 453–457.CrossRefGoogle Scholar
OTA, T.D. (1993) Genetic Distance and phylogenetic Analysis, Pennsylvania. State University Park, PA.Google Scholar
PONSUKSILI, S., WIMMERS, K., SCHMOLL, F., HORST, P. and SCHELLANDER, K. (1999) Comparison of multilocus DNA fingerprints and microsatellites in an estimate of genetic distance in chicken. Journal of Heredity 6: 656–659.CrossRefGoogle Scholar
RUOKONEN, M. (2000) Close relatedness between mitochondria DNA from seven Ansergoose species. Evolutionary Biology 13: 532–540.CrossRefGoogle Scholar
SHI, X.W., WANG, J.W. and ZENG, F.T. (1998) Mitochondrial DNA polymorphism of Sichuan white goose breed from China and Landish goose breed from France as well as their hybrids. Acta Veterinaria ET Zootechnica 29: 481–486 (in Chinese).Google Scholar
TU, Y.J., CHEN, K.W., ZHANG, S.J., TANG, Q.P., GAO, Y.S. and YANG, N. (2005) Genetic diversity of 14 Indigenous Grey Goose Breeds in China based on microsatellite markers. Asian-Australian Journal of Animal Science 19: 1–6.CrossRefGoogle Scholar
XU, G.F. and CHEN, K.W. (2004) Photograph album of Chinese indigenous poultry breeds. Chinese Agriculture Publisher. Beijing (in Chinese).Google Scholar
JIANG, Z.P., CHEN, T., QI, X.L., JIANG, X.D. and ZHONG, Y.L. (2003) Goose resources and its utilization of Sinkiang in China. China poultry 23: 54–55 (in Chinese).Google Scholar
LI, H., YANG, N., CHEN, K., CHEN, G., TANG, Q., TU, Y., YU, Y. and MA, Y. (2006) Study on molecular genetic diversity of native duck breeds in China. World's Poultry Science Journal 26: 603–611.Google Scholar
CHEN, G.H., WU, X.S., WANG, D.Q., QIN, J., WU, S.L., ZHOU, Q.L., XIE, F., CHENG, R., XU, Q., LIU, B., ZHANG, X.Y. and OLOWOFESO, O. (2004) Cluster analysis of 12 Chinese native chicken populations using microsatellite markers. Asian-Australian Journal Animal Science 8: 1047–1052.CrossRefGoogle Scholar
CROOIJMANS, R.P.M.A., VAN KAMPEN, A.J.A., VAN DER POEL, J.J. and GROENEN, M.A.M. (1993) Highly polymorphic microsatellite markers in poultry. Animal Genetics 24: 441–443.CrossRefGoogle ScholarPubMed
GROENEN, M.A.M., CHENG, H.H., BUMSTEAD, N., BENKEL, B., BRILES, E., BURT, D.W., BURKE, T., DODGSON, J., HILLEL, J., LAMONT, S., PONCE DE LEON, F.A., SMITH, G., SOLLER, M., TAKAHASHI, H. and VIGNAL, A. (2000) Consensus linkage map of the chicken genome, Genome Research 10: 137–147.Google ScholarPubMed
MILLER, S.A., DYKES, D.D. and POLESKY, H.F. (1988) Asimple salting out procedure for extracting DNA from human nucleated cell. Nucleic Acids Research 16: 1215.CrossRefGoogle Scholar
OBATA, T., TAKEDA, H. and OISHI, T. (1994) Japanese native livestock breeds, Animal Genetics Resource Information. (UNEP-FAO) 13: 13–24.Google Scholar
ROMANOV, M.N. and WEIGEND, S. (2001) Analysis of genetic relationships between various populations of domestic and Jungle Fowl using microsatellite markers. Poultry Science 80: 1057–1063.CrossRefGoogle ScholarPubMed
ROMANOV, M.N., WEZYK, S., CYWA-BENKO, K. and SAKHATSKY, N.I. (1996) Poultry genetic resources in the countries of Eastern Europe–history and current state. Poultry Avian Biology. Review 7: 1–29.Google Scholar
SNEATH, P.H.A. and SOKAL, R.R. (1973) Numerical Taxonomy. W. H. Freeman, San Francisco.Google Scholar
TAKEZAKI, N. and NEI, M. (1996) Genetic distance and reconstruction of phylogenetic tress from microsatellite DNA. Genetics 144: 389–399.CrossRefGoogle Scholar
ZHANG, X., LEUNG, F.C., CHAN, D.K.O., YANG, G. and WU, C. (2002) Genetic diversity of Chinese native chicken breeds based on protein polymorphism, randomly amplified polymorphic DNA, and microsatellite polymorphism. Poultry Science 81: 1463–1472.CrossRefGoogle ScholarPubMed