Identification of a family of group II introns encoding LAGLIDADG ORFs typical of group I introns

NAVTEJ TOOR; STEVEN ZIMMERLY

doi:10.1017/S1355838202023087

Abstract

Core share and HTML view are not available for this content. However, as you have access to this content, a full PDF is available via the ‘Save PDF’ action button.

Group I and group II introns are unrelated classes of introns that each encode proteins that facilitate intron splicing and intron mobility. Here we describe a new subfamily of nine introns in fungi that are group II introns but encode LAGLIDADG ORFs typical of group I introns. The introns have fairly standard group IIB1 RNA structures and are inserted into three different sites in SSU and LSU rRNA genes. Therefore, introns should not be assumed to be group I introns based solely on the presence of a LAGLIDADG ORF.

Crossref Citations

This article has been cited by the following publications. This list is generated based on data provided by Crossref.

DAI, LIXIN and ZIMMERLY, STEVEN 2003. ORF-less and reverse-transcriptase-encoding group II introns in archaebacteria, with a pattern of homing into related group II intron ORFs. RNA, Vol. 9, Issue. 1, p. 14.

Curcio, M. Joan and Derbyshire, Keith M. 2003. The outs and ins of transposition: from Mu to Kangaroo. Nature Reviews Molecular Cell Biology, Vol. 4, Issue. 11, p. 865.

Hausner, Georg 2003. Fungal Genomics. Vol. 3, Issue. , p. 101.

Gobbi, Emanuela Firrao, Giuseppe Carpanelli, Anna Locci, Romano and Van Alfen, Neal K 2003. Mapping and characterization of polymorphism in mtDNA of Cryphonectria parasitica: evidence of the presence of an optional intron. Fungal Genetics and Biology, Vol. 40, Issue. 3, p. 215.

Lambowitz, Alan M. and Zimmerly, Steven 2004. Mobile Group II Introns. Annual Review of Genetics, Vol. 38, Issue. 1, p. 1.

Caprara, Mark G. and Waring, Richard B. 2005. Homing Endonucleases and Inteins. Vol. 16, Issue. , p. 103.

Lambowitz, Alan M. Mohr, Georg and Zimmerly, Steven 2005. Homing Endonucleases and Inteins. Vol. 16, Issue. , p. 121.

Litter, Judit Keszthelyi, Andrea Hamari, Zsuzsanna Pfeiffer, Ilona and Kucsera, Judit 2005. Differences in Mitochondrial Genome Organization of Cryptococcus Neoformans Strains. Antonie van Leeuwenhoek, Vol. 88, Issue. 3-4, p. 249.

Raab, Philipp A. Brennwald, Annemarie and Redecker, Dirk 2005. Mitochondrial large ribosomal subunit sequences are homogeneous within isolates of Glomus (arbuscular mycorrhizal fungi, Glomeromycota). Mycological Research, Vol. 109, Issue. 12, p. 1315.

Gibb, Ewan A. and Hausner, Georg 2005. Optional mitochondrial introns and evidence for a homing-endonuclease gene in the mtDNA rnl gene in Ophiostoma ulmi s. lat.. Mycological Research, Vol. 109, Issue. 10, p. 1112.

Toor, Navtej Robart, Aaron R. Christianson, Joshua and Zimmerly, Steven 2006. Self-splicing of a group IIC intron: 5′ exon recognition and alternative 5′ splicing events implicate the stem–loop motif of a transcriptional terminator. Nucleic Acids Research, Vol. 34, Issue. 22, p. 6461.

Rot, Chagai Goldfarb, Itay Ilan, Micha and Huchon, Dorothée 2006. Putative cross-kingdom horizontal gene transfer in sponge (Porifera) mitochondria. BMC Evolutionary Biology, Vol. 6, Issue. 1,

Lang, B. Franz Laforest, Marie-Josée and Burger, Gertraud 2007. Mitochondrial introns: a critical view. Trends in Genetics, Vol. 23, Issue. 3, p. 119.

Simon, Dawn M. Clarke, Nicholas A.C. McNeil, Bonnie A. Johnson, Ian Pantuso, Davin Dai, Lixin Chai, Dinggeng and Zimmerly, Steven 2008. Group II introns in Eubacteria and Archaea: ORF-less introns and new varieties. RNA, Vol. 14, Issue. 9, p. 1704.

Monteiro-Vitorello, Claudia B. Hausner, Georg Searles, Denise B. Gibb, Ewan A. Fulbright, Dennis W. and Bertrand, Helmut 2009. The Cryphonectria parasitica mitochondrial rns gene: Plasmid-like elements, introns and homing endonucleases. Fungal Genetics and Biology, Vol. 46, Issue. 11, p. 837.

Fedler, Michael Luh, Kai-Stephen Stelter, Kathrin Nieto-Jacobo, Fernanda and Basse, Christoph W 2009. Thea2Mating-Type Locus Geneslga2andrga2Direct Uniparental Mitochondrial DNA (mtDNA) Inheritance and Constrain mtDNA Recombination During Sexual Development ofUstilago maydis. Genetics, Vol. 181, Issue. 3, p. 847.

Kamikawa, Ryoma Masuda, Isao Demura, Mikihide Oyama, Kenichi Yoshimatsu, Sadaaki Kawachi, Masanobu and Sako, Yoshihiko 2009. Mitochondrial Group II Introns in the Raphidophycean Flagellate Chattonella spp. Suggest a Diatom-to-Chattonella Lateral Group II Intron Transfer. Protist, Vol. 160, Issue. 3, p. 364.

VIALLE, AGATHE FEAU, NICOLAS ALLAIRE, MATHIEU DIDUKH, MARYNA MARTIN, FRANCIS MONCALVO, JEAN‐MARC and HAMELIN, RICHARD C. 2009. Evaluation of mitochondrial genes as DNA barcode for Basidiomycota. Molecular Ecology Resources, Vol. 9, Issue. s1, p. 99.

Sethuraman, J. Majer, A. Friedrich, N. C. Edgell, D. R. and Hausner, G. 2009. Genes within Genes: Multiple LAGLIDADG Homing Endonucleases Target the Ribosomal Protein S3 Gene Encoded within an rnl Group I Intron of Ophiostoma and Related Taxa. Molecular Biology and Evolution, Vol. 26, Issue. 10, p. 2299.

Odom, Obed W. and Herrin, David L. 2010. AN UNPRECEDENTED GROUP-II INTRON FROM CHLAMYDOMONAS SUBCAUDATA (CHLOROPHYCEAE) THAT HAS TWO LARGE OPEN READING FRAMES-POTENTIALLY ENCODING A REVERSE TRANSCRIPTASE-MATURASE-ENDONUCLEASE AND A NOVEL PROTEIN1. Journal of Phycology, Vol. 46, Issue. 5, p. 969.

Download full list

Article contents

Identification of a family of group II introns encoding LAGLIDADG ORFs typical of group I introns

Abstract

Keywords

This article has been cited by the following publications. This list is generated based on data provided by Crossref.

Article contents

Identification of a family of group II introns encoding LAGLIDADG ORFs typical of group I introns

Abstract

Keywords

Save article to Kindle

Save article to Dropbox

Save article to Google Drive

Reply to: Submit a response

Your details

You have entered the maximum number of contributors

Conflicting interests