Selection of desirable phenotypes and characterization of variability in economically important traits are essential for domestication of indigenous fruit trees (IFTs). Currently, participatory tree selection is a widely accepted approach in IFT domestication wherein farmers' knowledge and preferences are included in tree selection processes. In Arunachal Pradesh, India, fruits of Phoebe cooperiana are extensively consumed by people and traded across the state. In this study, we employed a selection index to screen trees for superior fruit traits from a base population of 45 farmer-identified trees of P. cooperiana in Arunachal Pradesh. Based on fruit diameter length ratio, pulp fruit ratio and yield, 19 trees were selected for superior fruit traits. The per cent improvement for 10 fruit and seed traits ranged from 0.16 to 14.56% compared to the base population. Significant variation for all fruit and seed parameters was observed among the 19 trees with coefficient of variation values ranging between 1.92% for fruit diameter and 8.26% for seed weight. There was significant positive association between economic traits including fruit weight with pulp weight, fruit diameter length ratio with fruit weight and pulp thickness with pulp weight. Principal component analysis revealed that variability was largely contributed by fruit weight (0.49), pulp weight (0.46), seed weight (0.45) and fruit diameter (0.42). Cluster analysis grouped phenotypes into seven groups with no clear clustering of individuals from the same area. The study highlights the significance of participatory tree selection approach and the benefits of individual tree selection in capturing wider variation and locating extreme phenotypes in IFT domestication.

The whitefly, Bemisia tabaci (Gennadius) is documented as a major pest on soybean. It was reported that whitefly response towards its hosts and their cultivars varies, and is mediated through various host-related factors. Considering the significance of leaf morphological characteristics in influencing the host–whitefly responses, the present investigation was conducted in screen-house conditions to study the prevailing variations in leaf morphological characteristics of soybean genotypes and their role in governing the adult whitefly attractiveness and oviposition preference. In the multiple-choice test, the whitefly population (eggs, nymphs and adults) was found to be lowest in moderately resistant genotypes (SL 1028 and SL 1074) compared to highly susceptible (DS 3105) and susceptible genotypes (SL 688, SL 958 and SL 1113). The foliar trichomes were characterized using scanning electron microscopy and leaf area, leaf lamina thickness and leaf shape data were acquired using standard procedures. To determine the factors involved in the resistance/susceptible responses towards whitefly, Pearson correlation was applied between the morphological characteristics and the whitefly population. The results show that the leaf area, trichome density, trichome length and trichome angle showed a significant positive correlation with the whitefly population, whereas leaf lamina thickness was negatively correlated. Thus, for developing whitefly-resistant germplasm, breeders should choose genotypes having narrow and thick leaves with sparse, short and flat trichomes.

In the fields of agricultural, food and medical research, the potential impacts of tea on human health are of special interest because tea (Camellia sinensis (L.) Kuntze) is continuously consumed by many people in the world. The evaluation of the diversity of genotypes found in tea germplasm can aid in the improvement of the breeding programme. In this study, the genetic diversity of 30 tea genotypes from two commercial sites of tea production in Iran was investigated by using morphological and 12 ISSR markers. Morphological analysis showed that the diversity between samples of tea was limited, and the narrow matching range was calculated. In cluster analysis at level 0.63, samples were divided into four groups. The application of 12 ISSR primers produced 91 polymorphic bands. PIC test showed a range of 0.41–0.48. Based on the ISSR data, the matching range was obtained in the range of 0.24–0.93. In cluster analysis, samples at level 0.58 were divided into five groups. According to the results, it can be understood that these series of traits and primers can very well recognize genetic differences. Using these markers, genetic diversity was observed among tea genotypes, but this diversity was not such as to be able to separate genotypes of various regions from each other. The results showed that the tea genotypes in Iran had high genetic diversity. As a consequence, the findings of our study will help the development of tea germplasm conservation strategies and their sustainable use in breeding programmes.

Selection of lines from segregating generations and breeding hybrids to exploit heterosis or heterobeltiosis is an effective tool for improving economically important traits in the genus Capsicum. The objective of this study was to identify high potential parents to obtain high-yielding F1 hybrids using a Line × Tester (8 × 2) mating design in the Habanero pepper improvement programme. Ten parents and 16 hybrids were evaluated in order to determine their values of general combining ability, specific combining ability, heterosis, and heterobeltiosis. Parent NKA-11 had the highest values of GCA for different quantitative variables of the fruit, which does it suitable for future improvement works, and tester RNJ-04 showed the highest value of GCA for fruit length. The quantitative variables evaluated confirm a significant genetic variability among the Habanero pepper genotypes studied. The best hybrids were NEK-03xRNJ-04, NBA-06xRNJ-04, AKN-07xRNJ-04, and RKI-10xRNJ-04, which showed their high productive potential with values between 3.13 and 4.92 Kg/Pta, a quality, that would open to them the national market for fresh consumption. Based on the GCA values of the parents and heterosis of the progenies, it is concluded hybridization would be the most appropriate genetic improvement method to increase both yield (YP) and the number of fruits for plant.

Twenty-nine exotic common bean germplasms and three elite cultivars were examined for phenotypic diversity in two bean-producing environments (Kanpur and Shimla) across three winter seasons and one rainy season. The estimate of genetic variability parameters revealed that the exotic bean germplasm has enough diversity for all the evaluated features. The highest genotypic and phenotypic coefficients of variation were found in seed yield, followed by 100-seed weight, pods per plant and pod length. Furthermore, seed yield was the most heritable and genetically advanced quantitative feature, followed by 100-seed weight, pod length and pods per plant. According to a trait association study, the days to maturity of phenological traits have a strong positive correlation with the days to initial flowering and the days to 50% flowering. Pods per plant and seeds per pod most strongly influence increased grain yield. The first two principal components accounted for 63.3% of the variation and demonstrated significant diversity among exotic bean lines for the traits studied, according to the principal component analysis. According to the hierarchical clustering analysis, 29 accessions and three cultivars were divided into three groups. Cluster I contains early flowering and maturing accessions, while cluster III contains high pods per plant and an increased grain yield of germplasms. The fundamental source of phenological fluctuations in both environmental circumstances is temperature. This study found four genetically divergent and stable performance accessions, including EC932021, EC932189 (earliness), and EC931452, EC931971 (high grain yield), which may aid in the establishment of a bean breeding programme.

The present study analysed a total of 272 saffron (Crocus sativus L.) genotypes using multivariate analysis. We carefully observed and recorded information about the floral, morphological and corm attributes. Significant variations were observed among the genotypes for all the traits, indicating a high level of variability and suggesting a great potential for saffron improvement. The phenotypic variances were found to be greater than the estimated genotypic variances. Descriptive data on various morphological traits revealed significant differences in the frequency of phenotype classes as well as a wide distribution range. The high heritability estimates were observed in average number of daughter corms per plant (ANDCPP), initial weight of corms (IWC g), no. of buds/corm (NBPC), – no. of leaves in main sprout, (NLMS), number of sprouted buds per corm (NSBpC) and total number of leaves (TNL), whereas average weight of daughter corms per plant (AWBCPP), corm diameter (CDcm), pistal length (PL) cm, style length (STYLcm), fresh weight of pistals per plant (FWOPPPmg) and stigma length (STML cm), revealed medium sense of heritability. The traits dry weight of pistals per plants (DWOPPP mg), inner tepal width (ITW cm), leaf length (LLcm), number of flowers per corm (NFpC), outer tepal length (OTLcm), parianth length with tube (PLWT cm) and weight of stigma (WSTG mg) exhibited low broad-sense heritability. Principal component analysis (PCA) divulged that the first eight component characters had an eigenvalue greater than one with a contributory cumulative variance of 66.15% to the total variance, while as rest of the 16 components contributed 33.85% of total variation in a set of 272 genotypes of saffron. The eigenvalues for yield attributing traits for significant PCs ranged from 5.48 (PC1) to 1.03(PC8). The current study has revealed that there was a sufficient variability in a set of saffron germplasm lines which forms the basis for performance-based clonal selection. Moreover, identified elite genotypes based on saffron yield and corm attributes could be used in the saffron breeding programme for the development of saffron varieties.

The shape of the flower can vary based on the type of pollinator or the environment in which the plant develops. In Vanilla insignis, there are no studies that analyse the shape of the labellum of the flower as has been done in V. planifolia. Therefore, the study aimed to determine the variation in the shape of the labellum of V. insignis through a morphometric analysis in different environmental conditions in the state of Quintana Roo, Mexico. The results showed that there were significant differences in the variables analysed. Principal component analysis and dendrogram analysis reveal that four V. insignis morphotypes were possibly associated with soil water availability conditions because there were significant differences between the variables that define the apical region. In addition, the distribution of the morphotypes corresponded with the presence of humidity regardless of geographical distances such as in the populations of Tenampulco, Puebla and Caobas, Quintana Roo. The presence of these morphotypes allows the development of conservation programmes and genetic improvement of the species of V. insignis and related commercial species.

One of the most essential prerequisites in plant breeding is to have a maximum collection of germplasm materials with all sorts of variability. As a part of the programme under the All India Coordinated Research Projects on Spices, totally 196 germplasm accessions of small cardamom are being maintained as field gene bank repository at the Cardamom Research Station, Pampadumpara. Tropical evergreen forests of the Indian Western Ghats and Sri Lankan Central Highlands are recognized as the home of cardamom. The area and production of cardamom are maximum in Kerala followed by Karnataka and Tamil Nadu. Variations among the germplasm collections in morphological and biometrical characters as well as for yield have been studied and reported in this paper. Accessions with distinct morphological marker characters, such as compound panicle types, terminal panicle bearing, narrow leaf types, pink pseudostem types, dark green bold capsules with high-yield potential and biotic-stress tolerant types, are being evaluated and conserved in this repository. The assessment of genetic diversity is an essential prerequisite for undertaking crop breeding activities to evolve suitable area and region-specific variety. Sixty-seven cardamom accessions were studied for genetic diversity by evaluating 14 unique characters for 3 years (2016–2018). Almost all accessions have shown significant variability for most of the biometric and biotic stress characters. Results have indicated a greater magnitude of genetic diversity of small cardamom present among accessions representing whole evergreen tropical forest of the Western Ghats.

Bael is an important sub-tropical fruit crop in family Rutaceae that is widely distributed throughout South-East Asia. For local communities, the nutritious composition of its fruits and leaves offers tremendous economic and social possibilities to exploit. However, its underutilized status, as well as man-made threats to its natural habitat, make it imperative to implement concrete strategies for its cultivation and conservation. To fully grasp the ability of this adaptable fruit tree for human health and environmental well-being, it is necessary to characterize the genetic diversity. The goal of this study was to use morphological (13 quantitative traits), biochemical (9 attributes) and molecular (10 SRAP primers) characterization to evaluate 24 bael genotypes from two agroecological zones of India. Fruit and pulp weight ranged from 79.0– to 1478.8 g and 15.0– to 894.3 g with mean values of 448.67 and 233.3 g, respectively. Traits such as fruit, pulp, and seed weight (g), fruit length (cm) and width (cm), number of fruits per tree, number of seeds per fruit, shell weight (g) and shell thickness (mm) recorded highly significant differences. High phenol (11.65–24.38 mg GAE/g fw) and flavonoid (12.32–74.63 mg CE/g fw) content was observed in fruit pulp indicating significant antioxidant potential of this fruit. Several morphological and biochemical characters were found to have significant positive correlations. Principal component analysis revealed that first five components contributed 96.76% to total variation. Hierarchical cluster analysis separated the populations into two distinct clusters, while analysis of molecular variance (AMOVA) using SRAP markers revealed that 70% of the total marker variation was due to interpopulation variance, while 30% was attributed to intrapopulation.

Seed coat colour in adzuki bean is an important quality trait and closely associated with anthocyanin metabolism pathways. To further understand the inheritance of seed coat colour pattern, the inheritance between multiple seed coat colours and ivory seed were analysed using F1:2, F2:3 and F3:4 populations derived from five bi-parental crosses. The differences between ivory and red mottle on ivory are controlled by a single recessive R locus and RI locus, respectively. Green, light brown and golden are all dominant to red and governed by two loci. The B (brown) locus shows dominant epistasis over T locus. The R (red) locus was recessive epistasis to B (black), T (light brown), G (golden), GR (green) and RI (red mottle on ivory) loci. The new insight into the strong recessive epistasis of the R locus will be important for gene mapping and cloning, candidate gene functional validation and quality improvement in adzuki bean.

Ziziphus lotus is an underappreciated natural genetic resource widespread in Algeria. This study aimed to compare the fruit phytochemical composition of nine populations of Z. lotus from different areas to highlight its diversity. Fruits were harvested from the semiarid, dry steppe and Saharan stages. Primary and secondary metabolites and minerals contents were determined. Significant variations in the fruit phytochemical composition between populations of Z. lotus and between pulp and seeds were recorded. Z. lotus is dry fruit with 8.768 ± 0.449 to 13.468 ± 1.303% water in pulp and 6.7 to 12.12% in seeds. Significantly higher values were recorded in the fruit pulp for sugar (35.25 to 48.87%), phosphorus (63.114 to 155.269 mg 100−1g), sodium (34.8 to 56.91 ppm), calcium (91.78 to 382.69 ppm), β-carotene (36.4 to 46 μg g−1), lycopene (59.15 to 100.25 μg g−1) and chlorophyll a (3.6 to 7.2 μg g−1) contents. Seeds had much higher protein (8.37 to 27.75%), lipid (35.39 to 48.01%), potassium (125.874 to 325.408 mg. 100−1 g), polyphenol (439.465 to 1349.46 mg.GAE.100 g−1), flavonoid (83.908 to 98.259 mg.QE.100 g−1), tannins (55.268 to 277.94 mg.GAE.100 g−1) and chlorophyll b (11.2 to 30.4 μg g−1) contents. Bougtob, Boghar and Mougheul populations had higher primary metabolites and mineral values. Oued Nougued, Maarif and Mougheul populations were the richest in phenolic compounds. Oued Nougued, Maarif and Mougheul populations had more liposoluble pigments. This research is the beginning of investigating the variety of Z. lotus as phylogenetic sources. Further comparative investigations over a larger distribution region and further study of variations in the composition in fruit composition using GC-MS are needed.

In Ethiopia, the low productivity of garlic is largely due to a shortage of high yielding and stable varieties. To address this issue, thirteen garlic genotypes were evaluated for yield stability and performance across six different environments in central and southeast Ethiopia. The genotypes were analysed using Additive Main effects and Multiplicative Interaction (AMMI) and genotype-by-environment interaction (G × E) methods. Results showed that the genotypes differed significantly for bulb yield performance and morphological traits, with G-020/03 and G-054/03 producing the highest bulb yield with 25.39% and 18.39% yield advantages over the check variety, Kuriftu, respectively. Furthermore, G-020/03 demonstrated better yield stability across most environments, while G-054/03 exhibited specific adaptability. GGE biplot analysis confirmed that these two genotypes were among the three winning genotypes in terms of yield performance and relative stability. Therefore, G-020/03 and G-054/03 have been selected as candidate varieties for release, potentially improving garlic productivity in Ethiopia.

Jatropha (Jatropha curcas L.) is a shrub that produces non-food oil and can potentially be used for biodiesel production. An interspecific cross was made between J. curcas and peregrina (J. integerrima) to increase genetic diversity. Interestingly, male sterility was observed in the F2 population. Out of the 445 F2 plants, five, namely, ms-1 to ms-5, exhibited male sterility, characterized by unopened and distorted stamens without pollen. The parental jatropha, peregrina, F1 and F2 had fertile pollen grain rates of 90.61%, 96.39%, 81.46% and 75.39%, respectively. To verify the fertility of the pistils in the male sterile plants, they were pollinated through selfing, opening and hand crossing with fertile pollen. All of the ms lines experienced seed abortion with or without fruit, except for ‘ms-5’, which produced seed.

Soybean is one of the chief crops producing protein and oil for human consumption. Wild soybean, the ancestor of cultivated soybean, possesses high seed protein content; therefore, it is a valuable genetic resource that could enhance protein content in the cultivated varieties. To identify the genes responsible for increasing protein content in wild soybean, a population comprising 113 BC4F6 chromosome segment substitution lines (CSSL) was developed from a cross between soybean cultivar ‘Jackson’ and wild soybean accession JWS156-1. The CSSL population was cultivated in the field conditions for 3 years (2018, 2019 and 2020), and the seeds harvested from each line were analysed for protein and oil contents by InfraTec Nova instrument. Quantitative trait locus (QTL) analysis with 243 SSR markers identified 12 QTLs associated with seed protein, oil and protein + oil contents. Among these QTLs, qPro8 and qPro19, two major and stable QTLs for protein content, were detected on chromosomes 8 and 19, respectively. No QTL for oil content was detected in the vicinity of qPro19, indicating that qPro19 did not influence the seed oil content. The effect of qPro19 was validated using near-isogenic lines (NILs) of qPro19. By introducing the qPro19 allele from wild soybean into another soybean variety, ‘Tachiyutaka’, a BC4 line, T-678, that showed enhanced seed protein content, without reducing the seed oil content. This study implied that the qPro19 allele from wild soybean could be a potential genetic resource for breeding programmes aimed to improve soybean seed quality.

The objective of this study is to prospect ISSR primers (Inter Simple Sequence Repeats) and, further genetic characterization in Paratecoma peroba. For this, leaf samples of 20 individuals were collected in a forest fragment, located in a private area, close to the Instituto Federal de Educação, Ciência e Tecnologia do Espírito Santo, in the city of Alegre, ES, Brazil. For this, 43 ISSR primers were tested, and 10 primers were selected, which provided a total of 91 bands, with 57 polymorphic bands, resulting in 62.63% polymorphism. The polymorphic information content (PIC = 0.27) indicated moderate informativeness of the primers and, therefore, they are efficient in studies with the species. However, the values found for genetic parameters such as the number of observed (AO = 1.68) and effective (AE = 1.41) alleles and, the genetic diversity indices of Nei (H* = 0.23) and Shannon (I* = 0.35) indicate the occurrence of homozygous loci and low genetic diversity in the population. On the other hand, the genetic structure evaluated by the Bayesian approach revealed the formation of three genetic groups distributed in all sampled individuals, inferring once again about the occurrence of loci in homozygosity. Therefore, the connection of neighbouring fragments and the establishment of individuals obtained from other sources could increase the genetic diversity of the population and reduce the possible effects of depression by inbreeding and genetic drift.

V. bicolor, V. trifolia s. str. and V. rotundifolia are part of a species complex that has recorded medicinal use in the Philippines. We assembled the first chloroplast genome of V. bicolor through next-generation sequencing and compared this to earlier established chloroplast genomes of V. trifolia s. str. and V. rotundifolia to provide additional insights into their genotypic differences. To ensure the continued utility of the research outputs in case of future taxonomic revisions, we characterized the morphology of PBN 2018-674, the reference germplasm utilized to generate the plastome. The complete chloroplast genome sequence of V. bicolor was 154,460 bp long with 131 coding genes comprising 87 mRNA genes, 36 tRNA genes and 8 rRNA genes. Using a separate accession from a different type locality, an identical chloroplast genome was equally established, indicating its conserved nature. When compared to V. trifolia s. str. and V. rotundifolia, slight variations were observed in genome features between these species; however, single nucleotide polymorphisms were exhibited in 13 protein-coding genes that often have a conserved nature. A phylogenetic analysis of the assembled genome, together with 12 other Lamiaceae species, exhibited high bootstrap support (>88%) within the species complex, and associated V. trifolia as the closest relative of V. bicolor. The identified variations in the plastomes can be utilized as markers that could distinguish the three closely related genotypes which can help the Philippine herbal industry provide a more stable source of quality herbal medicines.

Verbascum blattaria L., commonly known as moth mullein, naturalized in the USA that produces white or yellow flowers could be considered as a potential ornamental plant. However, genetic characterization using molecular markers and leaf morphology, colourimetric analysis and flowering of V. blattaria influenced by low temperature treatments was not investigated to evaluate as a potential horticultural and landscape plant use. The basal leaves developed during the rosette-growth stage were oblanceolate with an obtuse leaf apex and incisions at the margin. Leaves produced on the stem during the reproductive development were ovate or lanceolate with an obtuse or acute leaf apex. Regardless of the colour of the petiole and leaf blade during the rosette-growth stage, there were no differences in the sequences of nuclear ribosomal ITS and chloroplast interspacer. All plants produced creamy white flowers with a purplish base corolla. All leaves formed during the vegetative and reproductive development were glabrous. Numerous stalked glandular trichomes were observed in the sepal, pedicel and bracts. Seeds started to germinate in 10 days at 25°C and reached the plateau in 30 days after sowing. The earliest flowering occurred in 131 days when the plants received 20 days of low temperature treatment (CD) (20 CD), producing 76 flowers, the highest number compared to the number of flowers produced by plants that received 0, 40 and 60 CD. Plants that received 20 CD exhibited early flowering, probably because of the early transition from vegetative growth to reproductive development, as judged by the short stem to the first flower.

The genus Oxalis contains important species worldwide with great economic and edible values. However, the testing guidelines have not been furbished, especially in China. Oxalis germplasm, including 60 species and 125 varieties, was collected from home and abroad and extensive field trials and phenotypic observations were conducted along with quantitative taxonomy, observations, correlation analysis and cluster analysis. Under the test guidelines of the International Union for the Protection of New Plant Varieties (UPOV), general guidelines for testing for distinctness, uniformity, stability (DUS) of new plant varieties, and Japanese test guidelines for DUS of Oxalis, 96 test characteristics (38 qualitative characteristics, 28 quantitative characteristics and 30 pseudo-qualitative characteristics) were determined as DUS test characteristics of Oxalis. Each test characteristic was scientifically graded and accurately described, and standard varieties and characteristic diagrams were provided for some characteristics. The guidelines for testing DUS of new plant varieties of Oxalis provide a standard for examining and testing new varieties of plants.

Efficiently distinguishing various Syzygium cumini L. Skeels (jamun) accessions holds practical significance for selection purposes. This study concentrated on 15 superior genotypes of jamun from the North Western Indian Himalayas, selected for their pivotal horticultural traits. Drawn from a pool of 82 collected genotypes and assessed across two consecutive years (2019 and 2020), these genotypes underwent morphological evaluations utilizing a randomized block design replicated thrice. Concurrently, random amplified polymorphic DNA (RAPD) and inter simple sequence repeat (ISSR) markers were employed for molecular analysis. Substantial variations surfaced among genotypes, both in morphological traits and fruit biochemistry. Notably, tree 43 exhibited promise across multiple horticultural facets, encompassing fruit weight, length, pulp weight, pulp-to-seed ratio and pulp percentage. Conversely, tree 49 excelled in elevated levels of total soluble solids, total sugar and reducing sugar. While principal component analysis and cluster analysis unveiled modest genetic variability, RAPD and ISSR markers unveiled pronounced molecular-level polymorphism. Agglomerative hierarchical clustering delineated the genotypes into five distinct clusters. Cluster I encompassed two genotypes, cluster II embraced five while the largest group, cluster III, included six genotypes. Clusters IV and V highlighted individual genotypes, trees 43 and 54 respectively. In the molecular analysis, UPGMA clustering yielded two primary clusters, spotlighting the noteworthy similarity between genotypes trees 49 and 52 whereas, trees 40, 43, 44 and 48 stood distinct. The observed genetic diversity stands as a valuable resource with substantial potential to enrich diverse breeding initiatives. These salient genetic variations underscore the richness within the studied population, offering a valuable asset for focused future pursuits.

This study evaluated the morphological diversity of some Nigerian accessions of Bambara groundnut. Field experiments were conducted in Nigeria in two locations and the phenotypic variation of Bambara groundnut accessions evaluated in 3 years (2017–2020) using a randomized complete block design. Twenty-eight quantitative and 10 qualitative traits were observed. Twenty-three out of the 28 quantitative morphological traits showed significant differences. TVSu-589 (28.85) and TVSu-670 (28.57) had the highest plant height; TVSu-572 (121.52), TVSu-271 (113.10) and TVSu-336 (104.15) had the highest 100-seed weight. Genetic variations were also observed in seed colour, terminal leaflet shape, petiole colour and eye pattern. Principal component analysis showed PC1 constituting 23.36% and PC2 constituting 15.76% of the total variation, while the first eight principal components with eigenvalues ≥1 revealed 77.28% of the total variation. Cluster analysis grouped the accessions into four groups. Based on yield data in this study, accessions TVSu-594, TVSu-350, TVSu-336, TVSu-1242, TVSu-129, TVSu-14, TVSu-179, TVSu-2100, TVSu-261 and TVSu-589 were the best for yield and are recommended for further evaluation to improve yield. This study showed that a wide range of diversity exists in Bambara groundnut of Nigerian origin that could be useful for further utilization of genetic resources and improvement.