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Microsatellite markers for Cattleya walkeriana Gardner, an endangered tropical orchid species

Published online by Cambridge University Press:  14 January 2016

Evandro Vagner Tambarussi ,
Lou C. Menezes ,
Bruna Ibañes ,
Lia Maris Orth Ritter Antiqueira ,
Gabriel Dequigiovanni ,
Maria Andréia Moreno ,
Elza Martins Ferraz ,
Maria Imaculada Zucchi ,
Elizabeth Ann Veasey  and
Roland Vencovsky
Evandro Vagner Tambarussi*
Affiliation:
Universidade Estadual do Centro-Oeste (UNICENTRO), Departamento de Engenharia Florestal, PR 153, Km 7, 84500-000Irati, PR, Brazil
Lou C. Menezes
Affiliation:
Orquidário Nacional do Ibama (IBAMA), Alameda SCEN Trecho 02, Acesso pela L4 Norte, 70818-900Brasília, DF, Brazil
Bruna Ibañes
Affiliation:
Centro de Energia Nuclear na Agricultura (CENA/USP), Av. Centenário, 303, CP 96, 13400-970Piracicaba, SP, Brazil
Lia Maris Orth Ritter Antiqueira
Affiliation:
Universidade Tecnológica Federal do Paraná (UTFPR), Av. Monteiro Lobato, Km 4, Jardim Carvalho, 84016-210Ponta Grossa, PR, Brazil
Gabriel Dequigiovanni
Affiliation:
Escola Superior de Agricultura “Luiz de Queiroz” (ESALQ/USP), Av. Padua Dias, 11, PO Box 9, 13418-090Piracicaba, SP, Brazil
Maria Andréia Moreno
Affiliation:
Escola Superior de Agricultura “Luiz de Queiroz” (ESALQ/USP), Av. Padua Dias, 11, PO Box 9, 13418-090Piracicaba, SP, Brazil
Elza Martins Ferraz
Affiliation:
Escola Superior de Agricultura “Luiz de Queiroz” (ESALQ/USP), Av. Padua Dias, 11, PO Box 9, 13418-090Piracicaba, SP, Brazil
Maria Imaculada Zucchi
Affiliation:
Agência Paulista de Tecnologia dos Agronegócios, Pólo Regional Centro Sul, Rodovia SP127, Km 30, CP 28, 13400-970Piracicaba, SP, Brazil
Elizabeth Ann Veasey
Affiliation:
Escola Superior de Agricultura “Luiz de Queiroz” (ESALQ/USP), Av. Padua Dias, 11, PO Box 9, 13418-090Piracicaba, SP, Brazil
Roland Vencovsky
Affiliation:
Escola Superior de Agricultura “Luiz de Queiroz” (ESALQ/USP), Av. Padua Dias, 11, PO Box 9, 13418-090Piracicaba, SP, Brazil
*
*Corresponding author. E-mail: [email protected]
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Abstract

Cattleya walkeriana, one of the most improved Brazilian Cattleyas, is a popular tropical orchid endemic from Brazil and currently endangered. In the present study, for the first time microsatellite markers were developed for C. walkeriana and their transferability was tested for the species C. loddigesii and C. nobilior. The markers were used for genotyping 26 C. walkeriana specimens from different growers and from different levels of improvement. The transferability was successful, with five polymorphic loci transferred to C. loddigesii and six polymorphic loci to C. nobilior. Eight loci were polymorphic, revealing a maximum of two to ten alleles per locus in C. walkeriana and two to four and two to five in C. loddigesii and C. nobilior, respectively. There was no significant linkage disequilibrium in the studied loci. For C. walkeriana, the observed and expected heterozygosities ranged from 0 to 0.963 and from 0.138 to 0.841, respectively. These markers identified polymorphisms and may be used to study the genetic diversity, gene flow or hybridization of these species.

Keywords

Brazilian orchidconservation geneticshybridizationpopulation geneticstropical orchid species
Type
Short Communications
Information
Plant Genetic Resources , Volume 15 , Issue 1 , February 2017 , pp. 93 - 96
Copyright
Copyright © NIAB 2016 

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References

Arditti, J (1992) Fundamentals of Orchid Biology. New York: John Wiley and Sons, p. 691.Google Scholar
Billotte, N, Lagoda, PJL, Risterucci, AM and Baurens, FC (1999) Microsatellite-enriched libraries: applied methodology for the development of SSR markers in tropical crops. Fruits 54: 277–288.Google Scholar
Cortés-Palomec, AC, McCayley, RA and Oyama, K (2008) Isolation, characterization and cross-amplification of polymorphic microsatellite loci in Laelia speciosa (Orchidaceae). Molecular Ecology Resources 8: 135–138.Google Scholar
Creste, S, Tulmann Neto, A and Figueira, A (2001) Detection of single sequence repeat polymorphism in denaturing polyacrylamide sequencing gels by silver staining. Plant Molecular Biology Reporter 19: 299–306.Google Scholar
Dignart, SL, Castro, EM, Pasqual, M, Ferronato, A, Braga, FT and Paiva, R (2009) Luz natural e concentrações de sacarose no cultivo in vitro de Cattleya walkeriana . Ciência e Agrotecnologia 33: 780–787.Google Scholar
Doyle, JJ and Doyle, JL (1987) A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochemistry 19: 11–15.Google Scholar
Everett, TH (1981) The New York Botanical Garden Illustrated Encyclopedia of Horticulture, vol. 4 . New York: Courier Corporation, p. 1268.Google Scholar
Frankham, R, Ballou, J and Briscoe, D (2002) Introduction to Conservation Genetics, 3rd edn . Cambridge, UK: Cambridge University Press.Google Scholar
Goudet, J (1995) Fstat (version 2.9.3.2): a computer program to calculate F-statistics. Journal of Heredity 86: 485–486.Google Scholar
Menezes, LC (2011) Orchids Cattleya walkeriana, 2nd edn . Brazil: Instituto Brasileiro do Meio Ambiente e dos Recursos Naturais Renováveis, IBAMA, pp. 11–28.Google Scholar
Novello, M, Rodrigues, JF, Pinheiro, F, Oliveira, GCX, Veasey, EA and Koehler, S (2013) Simple-sequence repeat markers of Cattleya coccinea (Orchidaceae), an endangered species of the Brazilian Atlantic Forest. Genetics and Molecular Research 12: 3274–3278.Google Scholar
Pinheiro, FMO, Santos, CPS, Barros, F and Cozzolino, S (2009) Cross amplification and characterization of microsatellite loci for the Neotropical orchid genus Epidendrum . Genetics and Molecular Biology 32: 337–339.Google Scholar
Rai, MK, Phulwaria, M and Shekhawat, NS (2013) Transferability of simple sequence repeat (SSR) markers developed in guava (Psidium guajava L.) to four Myrtaceae species. Molecular Biology Reports 40: 5067–5071.Google Scholar
Swarts, ND, Sinclair, EA and Dixon, K (2007) Characterization of microsatellite loci in the endangered grand spider orchid Caladenia huegelii (Orchidaceae). Molecular Ecology Resources 7: 1141–1143.Google Scholar
Tambarussi, EV, Sebbenn, AM, Moreno, MA, Ferraz, EM, Kageyama, PY and Vencovsky, R (2013) Microsatellite markers for Cariniana legalis (Lecythidaceae) and their transferability to Cariniana estrellensis . Applications in Plant Sciences 1: 1200493.Google Scholar
Untergasser, A, Nijveen, H, Rao, X, Bisseling, T, Geurts, R and Leunissen, JAM (2007) Primer3Plus, an enhanced web interface to Primer3. Nucleic Acids Research 35(Supplement 2): W71–W74.Google Scholar