Hostname: page-component-586b7cd67f-2plfb Total loading time: 0 Render date: 2024-11-27T12:00:01.091Z Has data issue: false hasContentIssue false

The Mitonuclear Compatibility Species Concept, Intrinsic Essentialism, and Natural Kinds

Published online by Cambridge University Press:  13 May 2024

Kyle B. Heine
Affiliation:
Department of Biological Sciences, Auburn University, Auburn, AL, USA
Elay Shech*
Affiliation:
Department of Philosophy, Auburn University, Auburn, AL, USA
*
Corresponding author: Elay Shech; Email: [email protected]
Rights & Permissions [Opens in a new window]

Abstract

This essay introduces, develops, and appraises the mitonuclear compatibility species concept (MCSC), identifying advantages and limitations with respect to alternative species concepts. While the consensus amongst most philosophers of biology is that (kind) essentialism about species is mistaken, and that species at most have relational essences, we appeal to the MCSC to defend thoroughgoing intrinsic essentialism. Namely, the doctrine that species have fully intrinsic essences and, thus, are natural kinds (of sorts), while allowing that species aren’t categorically distinct.

Type
Article
Copyright
© The Author(s), 2024. Published by Cambridge University Press on behalf of the Philosophy of Science Association

1. Introduction

Species are the fundamental taxonomic unit of evolutionary biology. However, how to best think about species is controversial in both the biological and philosophical literature, and different characterizations of species results both in different ways of understanding the nature of species and in how species are counted (Coyne and Orr Reference Coyne and Orr2009; Hey Reference Hey2001; Zachos Reference Zachos2016). Disputes regarding how best to think of species spill over into whether species are natural kinds, individuals, historical entities, and so forth (Ereshefsky Reference Ereshefsky2022; Bird and Tobin Reference Bird and Tobin2023). In this article, we contribute to this discussion by emphasizing the role of mitonuclear ecology in speciation, which is rarely considered in the biological and philosophical literature.Footnote 1 We introduce, develop, and appraise the mitonuclear compatibility species concept (MCSC)—roughly, the view that species should be individuated in virtue of mitonuclear compatibilities—and showcase philosophical consequences by reconsidering whether species have intrinsic essences. Specifically, although the consensus amongst philosophers of biology is that (kind) essentialism about species is wrong, so that species at most have relational essences (e.g., Griffiths Reference Griffiths and Robert1999; Okasha Reference Okasha2002), some arguing that species have partly intrinsic essences (viz., Devitt Reference Devitt2008, Reference Devitt2021, Reference Devitt2023), we appeal to the MCSC to defend a thoroughgoing intrinsic essentialism; namely, the doctrine that species have essences that are fully intrinsic and, thus, are natural kinds (of sorts). Nevertheless, we maintain that species aren’t categorically distinct (or, alternatively, that species-membership is sometimes indeterminate), nor will typical phenotypic characteristics be determined solely by a species essence. Hence, the view we defend is not a traditional essentialist view.

Section 2 outlines the MCSC, while section 3 reviews other prominent species concepts and compares them to the MCSC. Section 4 presents advantages and limitations of the MCSC. In section 5, we present our argument for thoroughgoing intrinsic essentialism about species. As such, we distinguish our brand of essentialism from traditional, relational, and Devitt’s (partly) intrinsic essentialism. Although entering the debate about natural kinds is beyond our scope, we conclude in section 6 by explaining in what sense the MCSC suggests that species are natural kinds.

Ultimately, our aim is not to settle the debate about species essentialism. Rather, we show that the MCSC has both important philosophical consequences and serious advantages over other ways of understanding species. Consequently, it ought to be taken seriously by philosophers. Reflecting on Leslie’s (Reference Leslie, Gendler and Hawthorne2013, 132) claim, that with intrinsic (kind) essentialism about species “there is a degree of consensus among philosophers of biology (and indeed biologists) that is almost unprecedented in philosophy at large,” we submit that such a consensus should be abandoned.Footnote 2 Instead, we suggest enlarging the conceptual possibility-space regarding species to include thoroughgoing intrinsic essentialism.

2. Overview of the MCSC

Mitonuclear ecology is a field of evolutionary ecology that emphasizes coadaptation and, therefore, cofunction between the mitochondrial (mt) and nuclear (N) genomes of eukaryotes. All eukaryotic organisms must have efficiently coadapted mt and N genomes to survive and reproduce successfully (Lane Reference Lane2005; Hill Reference Hill2017). This intimate cofunction of mt and N genes directly influences oxidative phosphorylation (OXPHOS), namely, cellular respiration, and thus, the ability of eukaryotes to consume oxygen and produce adenosine triphosphate (ATP, or energetic currency) efficiently. This is because mt and N proteins function side-by-side within complexes of the electron transport system (ETS) and as ribonucleic acids (RNAs) during the translation of proteins. If these gene products do not function well together—that is, if they are not coadapted—then ATP will not be produced efficiently, impeding the essential processes that lead to survival and reproductive success. Although mitonuclear compatibility isn’t the only mechanism underlying isolation between populations, it is, arguably, the most important aspect of eukaryotic function and, hence, speciation. Biological research has largely focused on the N genome and assumed that mt genes are static within and between populations. Yet, recent work on hybridization and mt genetics has revealed varying levels of heterogeneity in mt genotypes. Thus, mitonuclear ecology has underlined the importance of the mt genome in efficient mitochondrial and organism performance.

The mt genome of eukaryotes contains only thirty-seven genes, whereas the N genome contains approximately 20,000 genes. The thirty-seven genes in the mt genome code for thirteen mt proteins, twenty-two transfer RNAs, and two ribosomal RNAs (Rand et al. Reference Rand, Haney and Fry2004; Kühlbrandt Reference Kühlbrandt2015). The thirteen mt proteins function in close association with N-encoded proteins within complexes I, III, IV, and V of the ETS. The remaining twenty-four gene products are involved in the replication of mt genes that influence OXPHOS in alternative ways. Additionally, there are seventy-three N-encoded proteins that form the ETS complexes alongside the thirteen mt-encoded proteins. In total, approximately 1,500 N-encoded proteins function in the mitochondrion (N-mt genes), of which, roughly 180 cofunction closely with mt genes (NO-mt genes) (see Figure 1).

Figure 1. Illustration of mitonuclear interactions between gene products of the mt and N genomes. tRNA – transfer RNA; rRNA – ribosomal RNA; Q – ubiquinone; Cyt c – cytochrome c. Modified from Hill (Reference Hill2017, 395), figure 1. Color online.

The MCSC says that “a species is a population that is genetically isolated from other populations by incompatibilities in uniquely coadapted mt and NO-mt genes” (Hill Reference Hill2017, 397).Footnote 3 As stated, the MCSC merely tells us what species (instead of, say, genera) are. It gives us an answer to what Devitt (Reference Devitt2008, 357), following Mayr (Reference Mayr1982, 253–54), calls the category problem/question: In virtue of what is a species S a species (and not a subspecies, a genus, etc.)? However, reflecting on how biologists determine species membership for organisms in mitonuclear ecology, we propose the following constitutive condition for species membership and individuation as an extension of the MCSC: Necessarily, organism O is a member of species S if and only if (iff) its (particular) mt and NO-mt genes are uniquely coadapted to function well together to promote efficient OXPHOS.Footnote 4 As such, this gives an answer to the taxon problem/question: In virtue of what is an organism O a member of species S (and not some other species) (Devitt Reference Devitt2008, 357; Mayr Reference Mayr1982, 253–54)?Footnote 5 Thus, as we are characterizing the MCSC, it affords answers to both the category and taxon questions. It is worthwhile to emphasize that our proposed characterization is assumed implicitly when mitonuclear ecologists like Hill determine species membership for organisms, and it fits well with the spirit of mitonuclear ecology that places “the coadaptation of mt and NO-mt genes at the center of the speciation process” with the goal of “understanding the fundamental nature of species” (Hill Reference Hill2019a, 143).Footnote 6

To clarify, although mitochondrial function as it relates to mitonuclear compatibilities is a trait that is shared across all eukaryotes, this doesn’t mean that all eukaryotes are members of the same species. The reason is that specific and unique combinations of mt and NO-mt genotypes lead to efficient mitochondrial function. These combinations are exclusive to, and different for, distinct species. This contrasts with other traits or N genotypes that, alone, are inevitably shared by organisms across species boundaries. So, the mitonuclear coevolution and amino acid substitutions that have come about in, say, humans will not exist in other primates, such as orangutans. For example, humans and other primates have weakly deleterious mutations that accumulate in the mt-encoded subunits of the cytochrome c oxidase (COX)Footnote 7 complex in the ETS. Occasionally, compensatory coevolution occurs, where adaptive substitutions in N-encoded mitochondrial proteins counteract these deleterious effects and prevent fitness decline (Osada and Akashi Reference Osada and Akashi2012).

An outcome of the MCSC is that parents between populations incur a cost of mating through possible decreases in OXPHOS efficiency in hybrids when said parents have incompatible mt and NO-mt genes. As such, the concept doesn’t focus on whether hybridization can occur, as is the case with the Biological Species Concept (BSC), but it focuses on the function of hybrid offspring, wherein said function exists along a continuum. Consequently, belonging to a species is a matter of degree under the MCSC. Combinations of poorly coadapted gene sets result in hybrid offspring that are either inviable or contain mitochondria with inefficient OXPHOS. We can determine species membership by assessing mitochondrial performance (i.e., ETS function)Footnote 8 in hybrids compared to parental lines (e.g., Ellison and Burton Reference Ellison and Burton2006). Hence, we can know whether O is a member of S because mitonuclear incompatibilities will result in decreased mitochondrial efficiency in hybrids of diverged populations, whereas mitochondrial function in hybrids from parental populations with coadapted mt and NO-mt genes will not differ significantly from parental lines.

Allopatric, mitonuclear speciation is thought to begin when a population splits, and the two allopatric daughter populations first develop unique mt genotypes. The two populations then develop uniquely coadapted NO-mt genes that maintain mitonuclear compatibilities. If the two populations come into secondary contact at a later time, the uniquely coadapted sets of mt and NO-mt genes between the two populations may be incompatible when the daughter populations interbreed to form hybrids (see Figure 2).Footnote 9 Taxonomically, O is a member of some species S1 and not S2 because it satisfies the necessary and sufficient condition of species membership noted above. With respect to S2, interbreeding with O would lead to hybrids that are either inviable or contain poorly coadapted sets of mt and NO-mt genes that lead to decreased efficiency of OXPHOS.

Figure 2. Illustration of speciation using the Mitonuclear Compatibility Species Concept. Modified from Hill (Reference Hill2019a, 152), figure 7.3. Color online.

Before continuing, it is worthwhile to consider two potential concerns to further clarify the MCSC. First, because there are many different clusters of organisms in the world (e.g., reproductive communities, demes, populations and metapopulations, phenotypically similar organisms, ancestor-descendant lineages), it may be tempting to conclude that we have given no argument for why the MCSC should be thought of as a species concept, rather than a concept that merely identifies other biologically important groups. In reply, mitonuclear coevolution is crucial to mitochondrial function and, therefore, to all of the energetically demanding processes related to survival and reproductive success. Because organisms must survive and reproduce successfully to evolve, mitonuclear ecology lies at the center of speciation and any legitimate species concept. In contrast, the clusters listed in the preceding text don’t lie at the center of speciation and, hence, shouldn’t underly species concepts because such groups don’t have a direct influence on survival and reproduction across eukaryotes as a whole. Further, the MCSC is a species concept—and not a general guide to grouping organisms—because it makes specific predictions about the function and hybridization of organisms. Additionally, the proof is in the pudding. Below, we identify advantages that the MCSC—if taken as a species concept instead of an identification of merely biologically important groups—has over other species concepts. Last, in our view, the philosophy should follow the science. So, if biologists seriously consider the MCSC as a species concept, it seems fair for philosophers to do so as well and, therefore, enquire into the advantages/disadvantages of adopting the MCSC as a species concept (sections 3 and 4) and the philosophical consequences that may follow (sections 5 and 6).

Second, one may worry that the MCSC gives a circular definition for species membership since it identifies those properties that determine species membership in relation to a particular species (vis-à-vis the notion of uniqueness). The worry, we believe, is misplaced because ultimately those properties that determine species membership will be a particular set of genes. Consider the following: take any two eukaryotes on the planet, call them O1 and O2, and allow them to mate to produce offspring. Based on compatibility of their mt and NO-mt genes, the resulting offspring will either be viable or not. Of those that are viable, their mitochondrial function will exist on a continuum based on how well their mt and NO-mt genes cofunction to promote efficient OXPHOS. Members of the same species, then, will be formed based on what offspring are able to survive and reproduce. This is a direct product of efficient mitochondrial function that results from mitonuclear compatibilities. Alternatively, we can carry out cybridFootnote 10 studies to assess mitochondrial function based on varying levels of mitonuclear compatibility. Said function declines when the genomes of more distantly related organisms are combined. Different levels of coadaptation between the mt and N genomes of two cell lines lead to variance in mitochondrial performance and, therefore, varying levels of relatedness (i.e., different species; see section 4 for more on cybrid studies). Therefore, we need not have a prior determination of what species O1 and O2 belong to determine species membership. Importantly, if we want to provide necessary and sufficient conditions for species membership, what we are looking for is a set of properties {p1} that, should some organism O possess said properties, it is a member of species S1, {p2} for S2, and so on. On the MCSC, the properties {p1} that determine that O1 belongs to S1 (and not S2 or any other species) is the previously mentioned set of mt and NO-mt genes.

3. Varieties of Species Concepts and Their Relation to the MCSC

Biologists have developed many diverse species concepts, of which the BSC and the Phylogenetic Species Concept (PSC) are most widely adopted in practice today. The BSC states that a species is a population that is reproductively isolated from other populations (Mayr Reference Mayr1940). Under this concept, gene flow is the primary determinant of speciation, with a focus on N genes and the ability of organisms to form hybrids. The PSC states a species is a monophyletic group of common ancestry (De Queiroz and Donoghue Reference De Queiroz and Donoghue1988). Here, the focus is on evolutionary history, where a species stems from a shared line of descent among organisms, in reference to one or more traits.Footnote 11

The MCSC is related to and expounds upon both the BSC and PSC, while settling disagreements and elaborating on details surrounding hybridization and the role of genetics in speciation. The BSC focuses on the exchange of N genes, whereas the MCSC focuses on the exchange of mt and NO-mt genes that are unique to populations and directly influence OXPHOS through coadaptation. Here, the MCSC provides a narrower focus on which genetic compatibilities are important and unambiguously makes predictions surrounding incompatibilities that result from hybridization. The BSC focuses on speciation that results from cessation of N geneflow and the inability to form hybrids. The MCSC, in contrast, allows for the exchange of N genes and hybridization between species but requires that such species retain distinct, coadapted sets of mt and NO-mt genes. Although the MCSC is a novel, independent species concept, it does share a limited number of characteristics with preceding concepts, such as breeding and the formation of hybrids, as outlined in the BSC.

Under the PSC, populations have a unique evolutionary history but retain coadapted sets of mt and NO-mt genes. Hence, a group of organisms may be a separate species under the PSC but not under the MCSC, depending on whether the phylogenetic assessment is of a genetic origin. Again, the MCSC provides a more detailed explanation of what is a “unique” evolutionary history, with emphasis on coadaptation and cofunction between specific genotypes. It is important to note, however, that in most cases, species identified under the PSC are maintained under the MCSC (Hill Reference Hill2017).

The Ecological Species Concept (ESC) defines a species as a “lineage which occupies an adaptive zone minimally different from that of any other lineage in its range and which evolves separately from all lineages outside its range” (Van Valen Reference Van Valen1976, 233). The Genotypic Cluster Species Concept (GCSC) states a species is a “morphologically or genetically distinguishable group of individuals that has few or no intermediates when in contact with other such clusters” (Mallet Reference Mallet1995; Coyne and Orr Reference Coyne and Orr2009, 273). Both the ESC and GCSC are perhaps more distantly related to the MCSC than the BSC and PSC. The ESC focuses on adaptive zones within an environment, which are defined regardless of the organisms present (Van Valen Reference Van Valen1976). Problems with the ESC arise, though, when organisms change their environment to influence their survival and reproductive success, and when different organisms inhabit the same environment without gene flow (e.g., temporal variations as seen in periodical cicadas; Coyne and Orr Reference Coyne and Orr2009). Unlike the MCSC, sympatric taxa that exchange genes to form viable hybrids with efficient mitochondrial function but inhabit different niches would be considered different taxa under the ESC. This issue doesn’t arise with the MCSC. Irrespective of whether organisms inhabit similar or different environments in space or time, the exchange of incompatible mt and NO-mt genes can influence mitochondrial function and, therefore, organism performance.

Issues with the GCSC arise because there is no specification of how many, or what, genes or traits must be different to define a species. Additionally, it isn’t clear what level of organization determines a cluster (e.g., species, genus, family). One advantage of the GCSC, however, is its application to asexual taxa, given that it doesn’t rely on hybridization. The MCSC doesn’t rely on hybridization either but on how hybrids function (i.e., the diffusion of mt genes). In the following section, we note further details on the advantages and limitations of the MCSC.

4. Advantages and Limitations of the MCSC

We believe the MCSC is an improvement upon other species concepts, but this does not preclude the MCSC from having limitations. Specifically, the MCSC is advantageous and builds on previous concepts in at least four ways: (1) it is a unifying species concept because it is widely applicable, (2) it is objective, in that we can make clear predictions and precise, unambiguous empirical measurements, (3) it is explanatorily superior (in certain respects), and (4) it exists on a continuum. Nonetheless, limitations exist regarding its inability to provide insights into speciation for bacteria and archaea, and it doesn’t specify what is considered “dysfunction” among hybrids.

Virtually all eukaryotes contain mitochondriaFootnote 12 , including asexualFootnote 13 organisms such as plants, fungi, and protists. As such, a species concept such as the MCSC, which is applicable to many organisms (including facultative asexual organisms), is advantageous in comparison to concepts that have a narrower scope with respect to the range of organisms to which they apply. In other words, because the need for mitonuclear coadaptation is universal among eukaryotes, the emphasis on mitonuclear interaction affords a unifying species concept—the MCSC—that is applicable across distantly related eukaryotes, where compatibilities between mt and N genes (and mitochondrial performance) can be compared directly and widely. For instance, if we want to use behavior to build a phylogeny of mammalian taxa, it would be difficult in most respects to compare, say, the behavior of dolphins to the behavior of humans in a meaningful way. However, such an approach is not only possible but practical using the coevolution and cofunction of mt and N genes. Even if we can find similarities in behavior between organisms such as dolphins and humans, such commonalities become nonexistent at the extreme ends of eukaryotic speciation. Still, the cofunction of mt and N genes, and their importance in animal performance, is present across Eukarya.

One limitation is that the MCSC doesn’t work for organisms without mitochondria, such as bacteria or archaea. Yet, it is worth considering whether prokaryotes warrant being organized using species concepts comparable to eukaryotic species concepts, due to lateral gene transfer as seen in bacteria. Here, the consideration is not whether prokaryotes exchange genes but how they do so. According to Hill (Reference Hill2019a), prokaryotes may not warrant such a consideration because they exchange genes in a way that doesn’t rely on vertical gene transfer via recombination (sex), but on horizontal gene transfer (lateral transfer), which isn’t dependent on the transfer of genes from parents to offspring. If this is the case, then the MCSC covers virtually all relevant organisms (i.e., eukaryotes) for which it needs to explain species-level organization. At least those with comparable mechanisms of gene transfer.

Furthermore, as an approach to species and speciation, the MCSC is objective because it affords clear predictions, utilizing precise, unambiguous measurements to delineating species’ identities provided mitochondrial function can be measured in comparison to that of parental lines. This differs from species concepts that are more subjective, such as the GCSC, which doesn’t specify what or how many genes, or traits, are needed to diagnose species boundaries. Simply stating that a species is “morphologically or genetically distinguishable” from other groups without explaining the specific traits or genotypes that are relevant is perhaps problematically subjective, provided researchers can determine this based on their research program and preferences. Likewise, the ESC doesn’t specify the precise qualifications by which an adaptive zone is “minimally different” or what constitutes a lineage to “evolve separately.” Additionally, the PSC doesn’t specify the criteria in deciding which organisms constitute the “smallest monophyletic group.” It doesn’t say whether taxonomic decisions regarding relatedness are based on genetics, morphology, breeding, fossils, and so forth. Instead, the MCSC is based on the evolution and coadaptation of specific mt and NO-mt genes that must cofunction well to achieve efficient OXPHOS; therefore, researchers can make detailed predictions as to the requirements of speciation by predicting exactly which genes function together and how they influence OXPHOS. One could argue, however, that no objective boundary exists for what is considered hybrid “dysfunction,” provided mitochondrial function exists along a continuum. Although, researchers can correlate mitochondrial function to whole-animal performance including survival, reproductive success, and whole-organism respiration.

Moreover, the MCSC is explanatorily superior to said approaches because it largely explains variation in survival and reproductive success (both of which are energetically demanding), where other approaches don’t. For example, recent work suggests a direct functional connection between the unique combinations of mt and NO-mt genes of house finches and, thus, their mitochondrial performance, and the process of carotenoid oxidation and feather pigmentation that, in turn, relates to various phenotypic traits such as the plumage color of house finches. Such a connection further “provides a novel mechanistic explanation for why carotenoid coloration relates to a range of aspects of individual performance and why females use plumage redness as a key criterion in choosing mates” (Hill et al. Reference Hill, Hood, Ge, Grinter, Greening, Johnson, Park, Taylor, Andreasen, Powers, Justyn, Parry, Kavazis and Zhang2019c, 8; our emphasis). In general, although it is beyond our scope here to get into details, by “elevating the interaction of mt and N genes to a central process in discussions of speciation” the MCSC “leads to novel explanations for some of the most interesting and perplexing characteristics of species including Haldane’s rule, asymmetrical outcomes of hybrid crosses, and the tendency for N genes to diffuse across species boundaries while mt and Z-linked genes typically show discrete transitions” (Hill Reference Hill2019a, 178). That said, an additional limitation of the MCSC is that it doesn’t afford historical explanations a la Devitt (Reference Devitt2023, ch. 3) (see section 5).

Additionally, the MCSC operates on a continuum of mitochondrial function and, hence, speciation is to some extent a matter of degree. That is, the MCSC states that speciation doesn’t revolve around whether hybrids can form (as with the BSC). Instead, what matters is hybrid function with respect to mitochondrial performance. Parents from different populations risk having offspring with mitochondrial dysfunction if the mt and NO-mt genes from the populations are incompatible. For instance, if we take cybrid studies such as Kenyon and Moraes (Reference Kenyon and Moraes1997), we observe that when the mtDNA of primates closely related to humans is combined with the N background of humans, respiratory function decreases by 20 percent, 34 percent, and 27 percent, for common chimpanzee, pigmy chimpanzee, and gorilla, respectively, but is functional in comparison to human cell lines. Nevertheless, when the mtDNA of more distantly related primates, for example, orangutan, old-world monkey, new-world monkey, lemur, is set against the N background of humans, mitochondrial performance isn’t restored to a functional state. As such, the key to understanding and defining species boundaries may not rely on whether two populations can interbreed but the extent to which hybrids can function to survive and reproduce successfully, which is directly and largely dependent upon mitochondrial performance (Heine and Hood Reference Heine and Hood2020; Heine Reference Heine2021).

Thus, a consequence of the MCSC is that it gives rise to what we call a “gray zone” for determining the extension of a species, provided hybrid function exists along a continuum. For example, two populations with highly diverged mt genotypes may both be able to function against similar N backgrounds (functioning hybrids), or alternatively, two populations with diverged mt genotypes may function poorly against N backgrounds that are also highly diverged (dysfunctional hybrids). These scenarios create various circumstances that lead to a continuum of greater or lesser mitochondrial function and, therefore, organism performance. This is because the mt genome of two populations can diverge without requiring an equal level of divergence in the N genome. Put differently, the MCSC is consistent with a scenario in which, hypothetically, an organism O belongs to two different species S1 and S2, but the criterion of mitochondrial performance allows for the determination of the species, S1 or S2, that O resides in to a greater degree. Accordingly, under the MCSC, species are not categorically distinct. In our view, this is a feature of the account, not a bug. That said, in cases of hybridization between species in the gray zone, one could also hold that it is indeterminate whether the hybrid belongs to one or another species. In any case, for practicing biologists, pragmatic decisions are made as to which species organism O belongs (such as S1 over S2, for our example). Moreover, DNA barcoding suggests that gray zones are rare. Mt genotype identifies species in agreement with preexisting concepts ∼95 percent of the time. This indicates that abrupt shifts in speciationFootnote 14 might occur more often than expected under mitonuclear theory (Hill Reference Hill2020). Nonetheless, evolution occurs continuously and, thus, doesn’t fit well into a discontinuous, binary mold. Therefore, species accounts that imply a discontinuous boundary are in some sense artificial because evolution implies there ought to be vague cases of speciation.

As an anonymous reviewer notes, the MCSC has the counterintuitive implication that were a “tiger” to evolve completely independently on a different planet, assuming it is intrinsically and genetically identical to tigers on Earth, it would still be a tiger according to the MCSC. Generally, if two groups of organisms independently evolve the same mt/NO-mt system, then they are the same species under the MCSC—even if found in outer space. Moreover, if the offspring of two conspecific parents, through mutation, exhibit a very different mt/NO-mt coadapted system, then they are a different species under the MCSC (unless they fall into the gray zone noted in the preceding text). Conversely, species concepts like the PSC that emphasize evolutionary history don’t have these counterintuitive implications. In response, we make three points. First, perhaps these scenarios are counterintuitive, but they are also extreme and unrealistic, so it seems permissible for there to be counterintuitive implications. Afterall, these implications also hold for the BSC. Second, other such thought experiments count in favor of the MCSC and against the PSC. Consider three such scenarios (from Devitt Reference Devitt2023, 102; original emphasis):

Twin-Earth Tigers: Suppose that there was a Twin Earth with a qualitatively identical tree of life to that on Earth. So, there would be a species on Twin Earth that would be intrinsically identical to our tigers and would have evolved from ancestors and a founder population that were intrinsically identical to the ancestors of our tigers.

Engineered-Tigers: Suppose that we genetically engineered new organisms “from scratch,” organisms bearing no lineal relationship to existing tigers yet that are genetically and phenotypically indistinguishable from those existing tigers and capable of interbreeding with them to produce fertile offspring.

Semiengineered-Tigers: Not only can these engineered-tigers interbreed with existing tigers but also many of them do. The result is a population made of three groups, indistinguishable except by their origins: (a) descendants solely of historical tigers; (b) descendants solely of engineered tigers; (c) descendants of both, “semiengineered-tigers.”

While according to the MCSC Twin-Earth tigers, engineered-tigers, and “tigers” in groups (b) and (c) are all tigers, the PSC (and other species concepts that emphasize actual evolutionary history) holds that such organisms are not tigers. This seems to us highly counterintuitive, also given that the tree of life on Twin Earth would be identical to that on Earth. In our view, the take-home message here is that not much can be concluded about the viability of a serious species concept considered by biologists from reflecting on unrealistic thought experiments. Different folks will have different intuitions, and counterintuitive scenarios will have counterintuitive implications.

5. Intrinsic Essentialism, Relational Essentialism, and Natural Kinds

Our goal in this section is to argue that the MCSC implies that species have fully intrinsic essences and, thus, suggests that species are natural kinds (of sorts). Section 5.1 reviews the received view of “relational essentialism” and Devitt’s new (partly) intrinsic essentialism, while section 5.2 argues for our brand of thoroughgoing intrinsic essentialism and distinguishes it from other types. We will assume metaphysical monism about species; namely, that there is a “single correct species concept” (Ereshefsky Reference Ereshefsky2022). Before starting in earnest, it is worthwhile to get clear on what we mean by a species “essence” and how the idea that O is an S in virtue of an essence may be fleshed out.

Traditionally, species essences are explanatory, so that it is because an organism is a member of some species that it has certain phenotypic characteristics typical of that species.Footnote 15 Devitt (Reference Devitt2023, 58–59) calls this “the Sober demand:” an essence “must be explanatory.… A species essence will be a causal mechanism that acts on each member of the species, making it the kind of thing that it is” (Sober Reference Sober1980, 25) (quoted in Devitt Reference Devitt2023, 58–59). However, while in what follows we will inquire into whether and to what extent a proposed species essence is causal-explanatory, this is not the notion of essence that we are working with. Instead, we adopt a classificatory notion of essence as discussed in, say, Okasha (Reference Okasha2002, 202): “[The] essence of a kind is … that set of properties which are jointly sufficient and individually necessary for being a member of the kind.” As we elaborate, this allows that said set of properties are intrinsic (intrinsic essentialism), partly intrinsic and partly relational (partly intrinsic essentialism), or relational properties (relational essentialism).Footnote 16

5.1 Intrinsic Versus Relational Essentialism

The default view about species, the view we would have if we did not think we have good reason to think otherwise, is that species are natural kinds with intrinsic essences. One way to think about essentialism is articulated by David Hull (1994, 313): “[E]ach species is distinguished by one set of essential characteristics. The possession of each essential character is necessary for membership in the species, and the possession of all the essential characters sufficient.” Two prominent problems with this conception concern biologists’ inability to find a common essence that all and only the members of a species share (Sober Reference Sober1980; Ereshefsky Reference Ereshefsky2001; Okasha Reference Okasha2002), and that evolutionary theory implies there are no sharp boundaries between species (Hull Reference Hull1965; Okasha Reference Okasha2002; Erenshefsky 2022). In other words, evolutionary mechanisms including mutation, gene flow, genetic drift, and natural selection can cause the disappearance of traits in subsequent generations of a species. To see that a trait is not essential, note that it can disappear from a population after occurring in all members of a species. Yet, different species often share common characteristics; therefore, the natural processes of evolution work against the idea that a trait is unique to a species and only members of that species.

Accordingly, there is a consensus amongst philosophers of biology that intrinsic essentialism “about species is today a dead issue” (Sober Reference Sober1980, 249) and that it is “both false and fundamentally inconsistent with the Darwinian view of species” (Griffiths Reference Griffiths2002, 72). For instance, Elliot Sober holds that “biologists do not think that species are defined in terms of phenotypic or genetic similarities.… Similarities and differences among organisms are evidence about whether they are conspecific, but a species is not defined by a set of traits” (Sober Reference Sober2000, 151; original emphasis). Samir Okasha (Reference Okasha2002, 196) concurs: “Virtually all philosophers of biology agree that … species are not individuated by essential characters.” He continues, “Empirically, it simply is not true that the groups of organisms that working biologists treat as con-specific share a set of common morphological, physiological or genetic traits which set them off from other species.” Likewise, Sarah-Jane Leslie (Reference Leslie, Gendler and Hawthorne2013, 132) explains that there “is no such thing as ‘lemon DNA,’ no common genetic code that makes for membership in the kind Panthera tigris.” Similar views are held by Barker (Reference Barker2010), Dupré (Reference Dupré and Robert1999), Ereshefsky (Reference Ereshefsky2001), Ghiselin (Reference Ghiselin and Ereshefsky1974), Griffiths (Reference Griffiths and Robert1999), LaPorte (Reference LaPorte2004), Lewens (Reference Lewens2012), Matthen (Reference Matthen1998), Rosenberg (Reference Rosenberg1985), Slater (Reference Slater2013), and Sterelny and Griffiths (Reference Sterelny and Griffiths1999), among others.

An alternative view of species essentialism, which can be called “relational essentialism” (Ereshefsky Reference Ereshefsky2022), has been suggested by, for example, Griffiths (Reference Griffiths and Robert1999), Sterelny and Griffiths (Reference Sterelny and Griffiths1999), Okasha (Reference Okasha2002), and LaPorte (Reference LaPorte2004). According to relational essentialism, relational properties among organisms, or between organisms and their environment, are the essence of a species. For example, Kim Sterelny and Paul Griffiths (Reference Griffiths and Robert1999, 8) explain: “Contemporary views on species are close to a consensus in thinking that species are identified by their histories. According to these views, Charles Darwin was a human being … in view of his membership in a population with a specific evolutionary history.” Consequently, “the essential properties that make a particular organism a platypus, for example, are historical or relational” (186). Similarly, according to Okasha (Reference Okasha2002, 202) “Darwinism shows the essential properties of species to be relational rather than intrinsic” and Sober (Reference Sober2000, 153) suggests that “species are historical entities; this means that two organisms are conspecific in virtue of their historical connection to each other, not in virtue of their similarity.”

These authors hold that species essences are relational (instead of intrinsic) properties because, “in fact, on the most popular accounts of the species concept found in contemporary evolutionary biology, organisms are assigned to species on the basis of relational properties” (Okasha Reference Okasha2002, 199). For example, with the BSC and also Paterson’s (Reference Paterson and Vrba1985) related “mate recognition” species concept, which concentrates on recognizing potential mates, it’s an organism’s relation to other organisms—in other words, through the ability to breed with or recognize potential mates—in virtue of which an organism belongs to a species. Under the PSC, for instance, an organism is a member of a species in virtue of its evolutionary history; two organisms are of the same species because they share an evolutionary line of decent. Similarly, under the ESC, species are also delineated using their location in evolutionary history through occupying an adaptive zone or ecological niche—environmental resources and habits—of the right kind. In sum, most species concepts seem to imply relational essentialism.

Importantly, “relational essentialism” about kinds is different from how “essentialism” is historically characterized in more ways than merely the shift from intrinsic to relational properties. Following Okasha (Reference Okasha2002) on this point, Locke (Reference Locke and Nidditch1689) distinguished between the nominal and real essence of a kind. Nominal essence concerns how we come to know kind membership, for instance, by associating properties like shiny, malleable, yellow, and metallic, with the kind gold. The real essence of a kind, in contrast, are those intrinsic properties in virtue of which a kind has its nominal essence. Additionally, the real essence explains why, say, being a shiny malleable yellow metal is associated with being gold. Although Locke believed that real essences weren’t discoverable, Putnam (Reference Putnam1975) and Kripke (Reference Kripke1980) argued otherwise. They held that the intrinsic essence of a kind—the genetic code for species (Putnam Reference Putnam1975, 240) and something’s hidden structure more generally speaking (Kripke Reference Kripke1980, 121)—serves both semantic and causal/explanatory roles. For instance, having atomic number 79 is causally responsible for and explains why the kind gold is associated with being a shiny malleable yellow metal, and also what users of the natural kind term “gold” are really referring to; that is, intrinsic essences determine semantic extension. While relational essentialism maintains that essences determine semantic extension by replacing intrinsic properties with relational ones, the view abandons the causal/explanatory role that essences are meant to serve:

[If] we apply the Kripke/Putnam model to biological species … by replacing Kripke’s and Putnam’s “hidden structure” with whatever relational property we think determines species membership—we do sever the semantic and causal/explanatory roles. To see this, suppose we adopt [the BSC] and we use morphological similarity as a fallible indicator of that ability. Now clearly, the causal explanation of why an organism has the particular morphological traits it does will cite its genotype and its developmental environment, not its ability to interbreed with certain other organisms. Morphology is indicative of that ability, but not the causal outcome of it. [Similarly, other species concepts] only play the semantic role that Kripke and Putnam attribute to “hidden structure,” not the causal/explanatory role. (Okasha Reference Okasha2002, 203–4; original emphasis)

In short, although kind essences are traditionally intrinsic and play both semantic and causal-explanatory roles, relational essentialism involves relational properties, and such essences only play a semantic role. We return to this issue in the following subsection.

In contrast to the consensus, Michael Devitt (Reference Devitt2008, Reference Devitt2021, Reference Devitt2023) has argued for “intrinsic biological essentialism,” where species and other biological taxa have partly intrinsic essences. Devitt’s argument may be summarized in four steps. First, following Mayr (Reference Mayr1961) and Kitcher (Reference Kitcher1984), he distinguishes between “historical” and “structural” explanations, focusing on the latter: Structural explanations “explain the properties of organisms by means of underlying structures and mechanisms” (121). Second, he notes that biology has generalizations such as grouping organisms together under a species and that such generalizations are both informative and provide structural explanations. Third, he submits that such generalizations cannot be brute facts and must be explained (Devitt Reference Devitt2021, 70). Fourth, he appeals to inference to the best explanation (IBE) to conclude that what is required are intrinsic properties: There is some “intrinsic underlying, probably largely genetic, property that is part of the essence of the group” (Devitt Reference Devitt2008, 253). Because we aren’t concerned with appraising Devitt’s argument, we only engage with parts of his account, insofar as these are related to essentialism as implied by the MCSC, a topic we turn to next.

5.2 The MCSC, Species, and Essentialism

Our argument for intrinsic essentialism is outlined as follows:

  1. P1) The MCSC has significant advantages over other species concepts.

  2. P2) The MCSC implies intrinsic essentialism about species.

  3. C) Therefore, species have intrinsic essences.

The evidence supporting P1 has been given in sections 34. There is, though, a weaker and stronger reading of the premise, with corresponding conclusions. On the stronger reading, advantages of the MCSC over other species concepts suggest that biologists and philosophers of biology adopt the MCSC. The conclusion, then, is that species have intrinsic essences. Nonetheless, a more tenable interpretation that we support concerns a weaker reading. Namely, we have shown that the MCSC has significant advantages over other species concepts. This implies that biologists and philosophers of biology take the MCSC seriously. Perhaps, then, species have relational essences under other species concepts, but species may have intrinsic essences under the MCSC. Consequently, we submit, the unprecedented degree of consensus amongst philosophers of biology in rejecting intrinsic essences must be abandoned.

Regarding P2, recall that according to the MCSC, necessarily, an organism O is a member of species S iff its mt and NO-mt genes are uniquely coadapted to function well together to promote efficient OXPHOS (viz., concerning the taxon question), and a species is a population that is genetically isolated from other populations by incompatibilities in uniquely coadapted mt and NO-mt genes (viz., concerning the category question). Because having a set of genes is an intrinsic and nonrelational property of an organism, the MCSC implies intrinsic essentialism: Those properties that determine that O is a member of S are intrinsic to O. Similarly, the answer that the MCSC gives to the category question holds that the species-making property (i.e., the property in virtue of which a collection of organisms counts as a species) is a combination of genes, so it is an intrinsic answer. This satisfies a constraint recently argued for by Okasha (Reference Okasha2023, 17), namely, that “the Taxon question has an intrinsic answer if and only if the Category question has an intrinsic answer.” However, an immediate worry comes to mind because one tenet of kind essentialism is that “all and only the members of a kind have a common essence” (Ereshefsky Reference Ereshefsky2022), but evolutionary theory entails a type of variation and change that is at odds with this tenet and, hence, with essentialism. Relatedly, another worry is that evolution is a gradual process. But if “species A gradually evolves into species B, where in this lineage should one draw the line that marks where A ends and B begins? Any line will be arbitrary. Essentialism, it is alleged, requires precise and nonarbitrary boundaries between natural kinds” (Sober Reference Sober2000, 150). In reply, we note three points.

First, on the MCSC, it is roughly true that “all and only” members of a species will have a common essence because the focus isn’t on any phenotypic or genetic trait but on the right combination of genes, namely, sharing uniquely coadapted sets of mt and NO-mt genes that don’t exist in the same combinations in other eukaryotes. Second, we say “roughly” because, as noted in the preceding text, it’s true that under the MCSC species boundaries will not be sharp; they will be somewhat vague and indeterminate. We called this the gray zone at the end of the last section, and it arises because hybrid function can exist along a continuum. Again, we see this as a merit of our account instead of a fault, as it accords well with evolutionary theory. Yet, the worry may be interpreted as one specific to essentialism. In reply, we can only repeat what Devitt (Reference Devitt2008) has successfully argued for in this regard: First, essentialism “does not require sharp boundaries between species.… Essences are a bit indeterminate” (373). Second, the indeterminacy that stems from evolutionary theory isn’t a special problem for intrinsic essentialism (neither ours nor Devitt’s). Last, recall that the MCSC is consistent with a scenario where an organism O belongs to two different species S1 and S2, but the criterion of mitochondrial function allows for the determination of which species O resides in to a greater degree. This means that the decision of whether O belongs to S1 or S2 isn’t entirely arbitrary but depends on mitochondrial function and the nature of what researchers deem relevant—for example, what is considered “statistically significant” or whether genotypes are “significantly” diverged.

To elaborate further on our MCSC-motivated intrinsic essentialism, it’s worthwhile to reflect on the role that our essentialism plays in comparison to relational essentialism and Devitt’s (partly) intrinsic essentialism. Starting with relational essentialism, we noted that the view maintains the semantic role of natural kind essence while abandoning the causal/explanatory role so that it’s an extra step removed from the historical characterization of kind essentialism. Our intrinsic essentialism maintains a partial causal/explanatory role for essences. To see this, recall that according to Kripke and Putnam, science discovered that having atomic number 79 is the (real) intrinsic essence of gold, and “this is the underlying microstructural property which explains why all samples of gold are shiny, yellow and malleable” (Okasha Reference Okasha2002, 194). Furthermore, Okasha (Reference Okasha2002, 203) says, “‘hidden structure’ is meant to be causally responsible for the presence of those superficial characteristics … ‘having atomic no. 79’ is both the true criterion for something’s being gold, i.e., it is what the term ‘gold’ really refers to, and is also what explains why all samples of gold have the superficial characteristics—yellowness, malleability etc.—that they do.” But if we substitute “gold” for “eukaryotic species,” “shiny, yellow, and malleable” for “mitochondrial function,” and “hidden structure” for “unique combinations of mt and NO-mt genes,” it follows that under the MCSC, biology is, in fact, attempting to both seek causal generalizations to explain organism survival and reproductive success through efficient mitochondrial function, and to identify “units that play a fundamental role in the evolutionary process.” In drawing said analogy, substituting “gold” for “species,” we can refer to eukaryotes as a whole or individual eukaryotic species. In both circumstances, mitochondrial function is unique, provided prokaryotes don’t contain mitochondria and each eukaryotic species contains uniquely coadapted sets of mt and NO-mt genes that are causally related to mitochondrial performance.

In other words, the MCSC implies that, contra Okasha, it is true that “the groups of organisms that working biologists treat as con-specific share a set of common … genetic traits which set them off from other species” (Okasha Reference Okasha2002, 196). Significantly, it’s not “genetic traits” that are important, but combinations of genetic traits—particularly, the mt and NO-mt genomes collectively. Conspecifics don’t share the exact same genes, however, they do share uniquely coadapted sets of mt and NO-mt genes that don’t exist in the same combinations among other eukaryotic groups. For example, under the BSC and PSC, blue- and golden-winged warblers (Vermivora cyanoptera and Vermivora chrysoptera, respectively) are not considered distinct species; the populations are able to hybridize, and they do not have unique evolutionary histories. Furthermore, their N genomes are 99.97 percent identical. However, when these two birds mate, their hybrid offspring have low fitness, and their mtDNA is 3 percent diverged (enough for sister species classification). Therefore, under the MCSC, blue- and golden-winged warblers are distinct species (Hill Reference Hill2017). This conclusion—along with the case of red coloration in house finches mentioned in section 4—shows that our intrinsic essentialism about species maintains a partial causal-explanatory role. Although it is no doubt different from the historical notion of kind essentialism, it is also closer to such a notion than “relational essentialism” and, thus, worthy of the name.

Nevertheless, an anonymous reviewer notes two worries. First, if the intrinsic essences of the MCSC are only partially explanatory, doesn’t it follow that there are some other properties (e.g., other genes, environment, evolutionary history) that explain the phenotypic traits typically associated with an organism that is a member of a species? If so, shouldn’t these other properties also count as part of the essence? Our reply is that on the classificatory notion of essence that we are working with, the answer (to the second question) is “no.” But we admit that on a casual-explanatory notion of essence we must, by the very definition of “essence,” answer in the affirmative, and this means that while the MCSC may capture part of species essences, it is incomplete. Second, Devitt (Reference Devitt2023, Ch. 3) argues that an organism’s relational essence, for example, their evolutionary history, provides a historical (instead of structural) explanation. Namely, it explains why organisms of that sort evolved in the first place: “For objects to be polar bears, they must have a certain history and that history brought it about that these objects have the phenotype properties that they have” (Devitt Reference Devitt2023, 92). Thus, our claim (following Okasha Reference Okasha2002) that relational essences aren’t explanatory is too quick. In response, we admit that relational properties provide explanations not had by intrinsic properties, and perhaps this counts against the MCSC. This also suggests that relational essentialism severs the semantic and structural causal/explanatory role, while maintaining a historical causal/explanatory role.

Next, reflecting on our view in comparison to Devitt’s (partly) intrinsic essentialism, our essentialism is both weaker and stronger than Devitt’s account. It is weaker because it applies only to species and not to other biological taxa, while Devitt’s essentialism applies to all (or most) biological taxa. The MCSC doesn’t apply to higher taxa beyond the species level, provided mitochondrial function ceases entirely once mitonuclear incompatibilities lead to inviable offspring. The result of incompatibilities between two genera may lead to complete hybrid dysfunction in the same manner that incompatibilities between distantly related families may lead to complete hybrid dysfunction.

Our essentialism is also stronger than Devitt’s because it implies that species have solely intrinsic essences, while Devitt’s essentialism holds that biological taxa have partly intrinsic and partly relational essences. That is, the MCSC implies a thoroughgoing intrinsic essentialism about species. Moreover, methodologically, while both relational essentialism and our thoroughgoing intrinsic essentialism are motivated by considering species concepts, Devitt’s essentialism is motivated by an IBE. To evade the objection that his essentialism doesn’t do justice to species concepts, Devitt (Reference Devitt2008, 357) appeals to the distinction between the category and taxon questions/problems (noted in section 2). He then argues that while the focus of essentialism ought to concern the taxon problem, most species concepts are primarily concerned with the category problem and “throw little light” on the taxon problem (Devitt Reference Devitt2008, 358). Here, we don’t wish to enter this debate, nor do we scrutinize Devitt’s arguments. Nonetheless, we must tackle a potential objection, namely, that the MCSC also throws little light on the taxon problem. In reply, it seems clear to us that the MCSC answers both the taxon and category problems/questions.

Regarding the latter, what makes a population S a species and not a subspecies, a genus, etc., is the level of genetic isolation of S in comparison to other populations by incompatibilities in uniquely coadapted mt and NO-mt genes. If we want to extend our approach to higher taxa, we can estimate the percent divergence in mt and N genotypes, however, such an assessment will not address mitochondrial performance, as such high levels of divergence will all lead to complete mitochondrial dysfunction. It is important to note that evolution is occurring at the population/species level and not between phyla, classes, etc. Higher taxa are also the result of evolution, but evolutionary mechanisms occur at the population level between breeding individuals. For example, gene flow between two interbreeding populations can alter genotype frequencies within each population but will not determine whether phylum A mates with phylum B.

Regarding the former, in defining the MCSC to incorporate the constitutive condition noted above, species membership and individuation is included: the MCSC tells us that O is a member of S (and not some other species) in virtue of having the right combination of genes; namely, mt and NO-mt genes that are uniquely coadapted to promote efficient OXPHOS. Such gene combinations will not be shared with other species and are specific to OXPHOS. Yet, one may object that the MCSC’s answer to the taxon question only gives an operational criterion for determining species membership and is, thus, “metaphysically hopeless” (Devitt Reference Devitt2008, 362). In other words, the MCSC is similar to operational species concepts such as those referring to S16 RNA in bacteria. The S16 RNA properties unique to one bacterial species help distinguish it from other species. But they don’t say much about what it is to be this particular bacterial species. Generally, one ought to explain how those properties that determine species membership are related to typical distinguishing features of said species.

Our reply comes in three parts. First, operationally-epistemically speaking, we can know that O belongs to S based on downstream, relational effects, such as comparing the genetics and mitochondrial function of parents and offspring. Metaphysically–ontologically speaking, what makes O an S—on the classificatory notion of essence that we have adopted—are the particular mt and NO-mt gene combinations that we have discussed. Crucially, Hill (Reference Hill2019a, 157) considers concrete proposals for characterizing the MCSC operationally that “make mt genotypes good predictors of species boundaries even if mitonuclear coadaptation plays no direct role in the speciation process”—call this “neutral theory.” He then shows that several predictions of neutral theory contradict the evidence, thereby further dispelling the charge that the MCSC is merely an operational criterion for classifying organisms according to species. Second, by requiring that those properties that determine species membership tell us about typical distinguishing features of said species in the same way that, say, “having atomic number 79” is causally–explanatorily related to being “shiny, malleable, yellow, and metallic,” the objector is begging the question against anyone who looks to give an untraditional essentialist account of species. Coadapted mt and NO-mt genes unique to S1 (and not S2) are intrinsic properties that partly explain features typical of S1 (and not of S2) such as oxygen consumption, ATP production, oxidative damage, etc. But they don’t determine all typical phenotypic traits characteristic of S1 in the same way that atomic number 79 ostensibly determines most observable characteristics of gold. To us, this suggests that evolutionary biology is different from chemistry and quantum mechanics. Still, if we want essences to abide by the “Sober demand,” then Devitt (Reference Devitt2008, Reference Devitt2023) is likely correct to maintain that biological essences are partly intrinsic and partly relational/historical.

Third, Devitt (Reference Devitt2008, 361) holds that his essentialism “partly explains why the members of a species have the characteristics … [that] make them a species: it is partly because those members have a certain essential intrinsic properties that, in the given environment, they interbreed and occupy a niche.” However, he says little in terms of what said intrinsic properties amount to except that they are “probably largely genetic.” The MCSC, then, can fill in the details on some of the largely genetic properties to which Devitt may be referring. Moreover, as noted in the preceding text, the MCSC partly explains the causal generalizations underlying organism survival and reproductive success, and the units that play a fundamental role in the evolutionary process. Specifically, the unique combinations of genes linked to mitochondrial function explain both organismal function that leads to the propagation of genes in subsequent generations (survival and reproduction) and the fundamental units (here, the genes) of eukaryotic evolution as a process.

6. Conclusion

We argued that the MCSC implies a thoroughgoing intrinsic essentialism about species, and that philosophers of biology ought to take seriously the MCSC and its consequences. Our essentialism is thoroughgoing in the sense that, first, properties that determine species membership are fully intrinsic (in contrast with relational and Devitt’s essentialism). Second, we maintain both a semantic role and a partial causal/explanatory role for species essences and, in contrast with Devitt’s essentialism, the MCSC only applies to species. Crucially, our goal was not to give a knock-down argument against alternative species concepts or philosophical accounts of species. Rather, we argued for enlarging the conceptual possibility-space regarding species—considering the MCSC—to include thoroughgoing intrinsic essentialism.

We conclude with two final points. First, we assumed monism about species. If, instead, pluralism about species concepts holds, and the correct concepts include one that is intrinsic in character, such as the MCSC, and another that is relational, such as the PSC, this suggests a hybrid view of essentialism about species (like Devitt’s): qua the MCSC, intrinsic kind essentialism holds, qua the (say) PSC, relational kind essentialism holds, so that species’ essences are partly intrinsic and partly relational. Second, there is a debate in the literature concerning the question of whether species are natural kinds with essences, individuals (e.g., Ghiselin Reference Ghiselin and Ereshefsky1974 and Hull Reference Hull1978), natural kinds using the notion of a Homeostatic Property Cluster (e.g., Boyd Reference Boyd and Wilson1999), and so forth, with some exciting new contributions such as Slater (Reference Slater2013)—who defends an “adjectival stance,” wherein natural kindness is a status attributed to groups of real organisms—and Austin (Reference Austin2019)—who argues for kind essentialism through a neo-Aristotelian metaphysics in which natural kinds are distinguished by their capacities and propensities. Unfortunately, it is beyond our scope to enter these debates. Instead, we adopt a neutral stance since, as Okasha (Reference Okasha2002) notes: “it is largely a matter of convention whether species are conceptualized as individuals, kinds or historical entities.… [Thus,] the issues about [intrinsic versus relational] essentialism do not depend on which view of the ontological status of species we favour” (193–94). Still, we briefly outline in what manner the MCSC suggests that species are natural kinds “of sorts.”

MCSC-motivated species-as-natural kinds seem to satisfy some common desiderata in the literature (e.g., Bird and Tobin Reference Bird and Tobin2023): Members of a natural kind should have some (natural) properties in common, natural kinds should permit inductive inferences, and members of a natural kind should form a kind. But other criteria aren’t met: Species, on the MCSC, aren’t categorically distinct, don’t form a hierarchy, and don’t participate in laws of nature. To us, this suggests that characterizations of “natural kinds” ought to be tailored to and motivated by particular sciences instead of decided by pretheoretic intuitions, a priori means, or other sciences. In any case, an MCSC-motivated analysis of such issues must await another occasion.

Acknowledgments

We are grateful to Julia Bursten, Antonio Capuano, Geoff Hill, Brian Mcloone, David Miller, Tim Sundell, and Michael Watkins for feedback on earlier versions of this article and helpful discussion. Thanks also to audience members at University of Kentucky’s Philosophy Speakers Committee Series.

Footnotes

1 Notable exceptions include Hill (2016, 2017, 2019a, Reference Hill2019b, Reference Hill, Hood, Ge, Grinter, Greening, Johnson, Park, Taylor, Andreasen, Powers, Justyn, Parry, Kavazis and Zhang2019c, Reference Hill2020), Heine and Hood (2020), and Heine and Shech (2021).

2 We omit reference to “kind” essentialism as opposed to “individual” essentialism—so by intrinsic essentialism, we mean intrinsic kind essentialism.

3 See also Hill (2016, 2018, 2019a). For pioneering work on the MCSC, see Levin (2003), Lane (2009), Gershoni et al. (Reference Gershoni, Templeton and Mishmar2009), Chou and Leu (Reference Chou and Leu2010), Bar Yaacov et al. (Reference Yaacov, Arbel-Thau, Zilka, Ovadia, Bouskila and Mishmar2012), and Burton and Barreto (Reference Burton and Barreto2012).

4 Precisely: For any organism O, species S, and gene pairing GS such that GS represents the mt and NO-mt genes that are uniquely coadapted to function well together to promote efficient OXPHOS in S, necessarily, O is an S iff O has GS. We follow the norm of using a biconditional to give a definition and add “necessarily” to emphasize our specifying what constitutes the kind essence of an O, i.e., of what it is for an O to be a particular S, and we propose that it is in virtue of having GS that O is an S. However, the modal strength of the MCSC’s answer to both the category and taxon questions depends on the notion of possibility under consideration. If by “possible” we mean “biologically possible worlds” with mutation and selection, that is, possible worlds according to our best biological theories—including mitonuclear ecology—then the MCSC’s answers to the category and taxon questions extend to all possible worlds. But the MCSC will likely not apply in merely conceivable or logically possible worlds where evolution works differently or isn’t at play at all. We remain neutral about such worlds.

5 We selectively focus on species, but Devitt takes the distinction to apply to any biological taxon.

6 Hence, if one takes the MCSC as an answer merely to the category question, while adopting, say, an organism’s evolutionary history as an answer to the taxon question, then many advantages (noted in section 4) for adopting the MCSC would be negated, e.g., objective and explicit predictions, wide application. It would lead to ambiguous outcomes for identifying species boundaries and inconsistent explanations regarding the process of speciation across taxa.

7 COX reduces oxygen to water in the mitochondrial matrix, a critical step in OXPHOS.

8 In addition to OXPHOS, other processes will also be affected such as the production of reactive oxygen species, oxidative damage, and the many downstream processes that rely on efficient ATP production.

9 For how the MCSC can be applied to sympatric speciation, see Hill (2016).

10 Cybrid cell lines are generated by combining nucleated and enucleated cells, fusing the mtDNA from one cell with the N DNA of another cell. This differs from hybrids that combine nucleated cells.

11 Although there are several versions of various species concepts, such as the monophyly and diagnosability versions of the PSC, we compare the MCSC to other concepts generally speaking to outline how the MCSC is an important species concept that should be taken seriously by both biologists and philosophers, and that implies intrinsic essentialism. For instance, the diagnosability version of the PSC focuses on “a diagnosable cluster of individuals within which there is a parental pattern of ancestry and descent, beyond which there is not, and which exhibits a pattern of phylogenetic ancestry and descent among units of like kind” (Eldredge and Cracraft 1980, 92). Irrespective of these variations, our thesis that the MCSC implies intrinsic essentialism holds, and it is beyond our scope to address such variation within alternative species concepts.

12 For an exceedingly rare exception, see Karnkowska et al. (2016), which outlines the existence of a eukaryotic microorganism containing no mitochondria.

13 See Hill’s Mitonuclear Ecology (Reference Hill2019a) for how mitonuclear compatibilities are relevant to the evolution of sex, as well as how mitonuclear ecology differs between sexual and asexual eukaryotes.

14 See Hill (2019b) for a discussion on the rampant introgression of mt genomes between species, which can lead to the erasure of species under the MCSC. The introgression of mt genomes between species can have two potential benefits: better adaptation to a local environment over the native mt genotype and overcoming a high mutational load of the mt genome in the recipient taxon. Both circumstances may lead to an increase in fitness.

15 Also see Austin (Reference Austin2019).

16 Strictly: There are intrinsic and extrinsic (nonintrinsic) properties, and a relation is intrinsic/extrinsic/partly intrinsic and partly extrinsic just in case it supervenes on the intrinsic/extrinsic/partly intrinsic and partly extrinsic properties of its relata (Okasha 2023, 8–9).

References

Austin, C. J. 2019. Essence in the Age of Evolution: A New Theory of Natural Kinds. New York: Routledge. https://www.routledge.com/Essence-in-the-Age-of-Evolution-A-New-Theory-of-Natural-Kinds/Austin/p/book/9781032094755 Google Scholar
Barker, M. J. 2010. “Species Intrinsicalism.” Philosophy of Science 77:7391. https://doi.org/10.1086/650209 CrossRefGoogle Scholar
Bird, A., and Tobin, E.. 2023. Natural Kinds. The Stanford Encyclopedia of Philosophy (Spring 2023 Edition), edited by Edward N. Zalta and Uri Nodelman. https://plato.stanford.edu/archives/spr2023/entries/natural-kinds/.Google Scholar
Boyd, R. 1999. “Homeostasis, Species, and Higher Taxa.” In Species: New Interdisciplinary Essays, edited by Wilson, R., 141–85. Cambridge, MA: MIT Press.CrossRefGoogle Scholar
Burton, R. S., and Barreto, F. S.. 2012. “A Disproportionate Role for mtDNA in Dobzhansky-Muller Incompatibilities?Molecular Ecology 21:4942–57. https://doi.org/10.1111/mec.12006 CrossRefGoogle ScholarPubMed
Chou, J. Y., and Leu, J. Y.. 2010. “Speciation through Cytonuclear Incompatibility: Insights from Yeast and Implication for Higher Eukaryotes.” BioEssays 32:401–11. https://doi.org/10.1002/bies.200900162 CrossRefGoogle ScholarPubMed
Coyne, J. A., and Orr, H. A. 2009. “Speciation: A Catalogue and Critique of Species Concepts.” Philosophy of Biology: An Anthology: 272–92.Google Scholar
De Queiroz, K., and Donoghue, M. J. 1988. “Phylogenetic Systematics and the Species Problem.” Cladistics 4 (4): 317–38. https://doi.org/10.1111/j.1096-0031.1988.tb00518.x CrossRefGoogle ScholarPubMed
Devitt, M. 2008. “Resurrecting Biological Essentialism.” Philosophy of Science 75: 344–82. https://doi.org/10.1086/593566 CrossRefGoogle Scholar
Devitt, M. 2021. “Defending Intrinsic Biological Essentialism.” Philosophy of Science 88: 6782. https://doi.org/10.1086/710029 CrossRefGoogle Scholar
Devitt, M. 2023. Biological Essentialism. Oxford: Oxford University Press.CrossRefGoogle Scholar
Dupré, J. 1999. “On the Impossibility of a Monistic Account of Species.” In Species: New Interdisciplinary Essays, edited by Robert, A. Wilson, 322. Cambridge, MA: MIT Press.CrossRefGoogle Scholar
Eldredge, N., and Cracraft, J. 1980. “Phylogenetic Patterns and the Evolutionary Process.” Method and Theory in Comparative Biology 8:1349.Google Scholar
Ellison, C. K, and Burton, R. S. 2006. “Disruption of Mitochondrial Function in Interpopulation Hybrids of Tigriopus californicus .” Evolution 60 (7):1382–91. https://doi.org/10.1111/j.0014-3820.2006.tb01217.xGoogle ScholarPubMed
Ereshefsky, M. 2001. The Poverty of the Linnaean Hierarchy: A Philosophical Study of Biological Taxonomy. Cambridge: Cambridge University Press.Google Scholar
Ereshefsky, M. 2022. Species. The Stanford Encyclopedia of Philosophy (Summer 2022 Edition), edited by Edward N. Zalta, https://plato.stanford.edu/archives/sum2022/entries/species/.Google Scholar
Gershoni, M., Templeton, A. R., and Mishmar, D. 2009. “Mitochondrial Bioenergetics as a Major Motive Force of Speciation.” Bioessays 31:642–50. https://doi.org/10.1002/bies.200800139 CrossRefGoogle Scholar
Ghiselin, M. T. 1974/1992. “A Radical Solution to the Species Problem.” In The Units of Evolution: Essays on the Nature of Species, edited by Ereshefsky, Marc, 279–91. Cambridge, MA: MIT Press.Google Scholar
Griffiths, P. 1999. “Squaring the Circle: Natural Kinds with Historical Essences.” In Species: New Interdisciplinary Essays, edited by Robert, A. Wilson, 209–28. Cambridge, MA: MIT Press.CrossRefGoogle Scholar
Griffiths, P. 2002. “What Is Innateness?Monist 85: 7085. https://www.jstor.org/stable/27903758 CrossRefGoogle Scholar
Heine, K. B. 2021. Mitochondrial Behavior, Morphology, and Animal Performance. PhD diss., Auburn University. Auburn University AUETD. https://etd.auburn.edu/handle/10415/7952.Google Scholar
Heine, K. B., and Hood, W. R. 2020. “Mitochondrial Behaviour, Morphology, and Animal Performance.” Biological Reviews 95 (3):730–37. https://doi.org/10.1111/brv.12584 CrossRefGoogle ScholarPubMed
Heine, K. B., and Shech, E. 2021. “Roles of Mitonuclear Ecology and Sex in Conceptualizing Evolutionary Fitness.” Biology & Philosophy 36 (3): 29. https://doi.org/10.1007/s10539-021-09804-3 CrossRefGoogle Scholar
Hey, J. 2001. “The Mind of the Species Problem.” Trends in Ecology & Evolution 16:326–29. https://doi.org/10.1016/S0169-5347(01)02145-0 CrossRefGoogle ScholarPubMed
Hill, G. E. 2016. “Mitonuclear Coevolution as the Genesis of Speciation and the Mitochondrial DNA Barcode Gap.” Ecology & Evolution 6 (16):5831–42. https://doi.org/10.1002/ece3.2338 CrossRefGoogle ScholarPubMed
Hill, G. E. 2017. “The Mitonuclear Compatibility Species Concept.” The Auk: Ornithological Advances 134 (2):393409. https://doi.org/10.1642/AUK-16-201.1 CrossRefGoogle Scholar
Hill, G. E. 2019a. Mitonuclear Ecology. Oxford: Oxford University Press.CrossRefGoogle Scholar
Hill, G. E. 2019b. “Reconciling the Mitonuclear Compatibility Species Concept with Rampant Mitochondrial Introgression.” Integrative & Comparative Biology 59 (4):912–24. https://doi.org/10.1093/icb/icz019 CrossRefGoogle ScholarPubMed
Hill, G. E., Hood, W. R., Ge, Z., Grinter, R., Greening, C., Johnson, J. D., Park, N. R., Taylor, H. A., Andreasen, V. A., Powers, M. J., Justyn, N. M., Parry, H. A., Kavazis, A. N., and Zhang, Y. 2019c. “Plumage Redness Signals Mitochondrial Function in the House Finch.” Proceedings of the Royal Society B: Biological Sciences 286:20191354. https://doi.org/10.1098/rspb.2019.1354 CrossRefGoogle ScholarPubMed
Hill, G. E. 2020. “Genetic Hitchhiking, Mitonuclear Coadaptation, and the Origins of mt DNA Barcode Gaps.” Ecology & Evolution 10 (17):9048–59. https://doi.org/10.1002/ece3.6640 CrossRefGoogle ScholarPubMed
Hull, D. 1965. “The Effect of Essentialism on Taxonomy: Two Thousand Years of Stasis.” British Journal for the Philosophy of Science 15:314–26. https://doi.org/10.1093/bjps/XV.60.314 CrossRefGoogle Scholar
Hull, D. 1978. “A Matter of Individuality.” Philosophy of Science 4:335–60. https://doi.org/10.1086/288811 CrossRefGoogle Scholar
Hull, D. 1994. “Contemporary Systematic Philosophies.” In Conceptual Issues in Evolutionary Biology, 2nd ed., edited by Sober, E., 295330. Cambridge, MA: MIT Press.Google Scholar
Karnkowska, A., Vacek, V., Zubáčová, Z., Treitli, S. C., Petrželková, R., Eme, L., … and Hampl, V. 2016. “A Eukaryote without a Mitochondrial Organelle.” Current Biology 26 (10):1274–84. https://doi.org/10.1016/j.cub.2016.03.053 CrossRefGoogle ScholarPubMed
Kenyon, L., and Moraes, C. T. (1997). “Expanding the Functional Human Mitochondrial DNA Database by the Establishment of Primate Xenomitochondrial Cybrids.” Proceedings of the National Academy of Sciences 94 (17):9131–35. https://doi.org/10.1073/pnas.94.17.9131 CrossRefGoogle ScholarPubMed
Kitcher, P. 1984. “Species.” Philosophy of Science 51:308–33. https://doi.org/10.1086/289182 CrossRefGoogle Scholar
Kripke, S. 1980. Naming and Necessity. Cambridge, MA: Harvard University Press.Google Scholar
Kühlbrandt, W. 2015. “Structure and function of mitochondrial membrane protein complexes.” BMC Biology 13:111.CrossRefGoogle ScholarPubMed
Lane, N. 2005. Power, Sex, Suicide: Mitochondria and the Meaning of Life. Oxford: Oxford University Press.Google Scholar
Lane, N. 2009. “On the Origin of Bar Codes: Genetic Sequences in a Cell’s Mitochondria Can Be Used to Accurately Determine Species. Could This Be Because They Are Responsible for Creating What They Identify?Nature 462 (7271):272–75. https://link.gale.com/apps/doc/A213406385/AONE?u=anon∼ec9ae6fe&sid=googleScholar&xid=ba6ceaa8 CrossRefGoogle Scholar
LaPorte, J. 2004. Natural Kinds and Conceptual Change. Cambridge: Cambridge University Press.Google Scholar
Leslie, Sarah-Jane. 2013. “Essence and Natural Kinds: When Science Meets Preschooler Intuition.” In Oxford Studies in Epistemology, vol. 4, edited by Gendler, Tamar Szabó and Hawthorne, John, 108–65. Oxford: Oxford University Press.CrossRefGoogle Scholar
Levin, D. A. 2003. “The Cytoplasmic Factor in Plant Speciation.” Systematic Botany 28:511. https://doi.org/10.1043/0363-6445-28.1.5 Google Scholar
Lewens, T. 2012. “Species, Essence and Explanation.” Studies in History & Philosophy of Biological & Biomedical Sciences 43:751–57. https://doi.org/10.1016/j.shpsc.2012.09.013 CrossRefGoogle ScholarPubMed
Locke, J. 1689. An Essay Concerning Human Understanding. Edited by Nidditch, P. H., 1975. Oxford: Clarendon Press.Google Scholar
Mallet, J. 1995. “A Species Definition for the Modern Synthesis.” Trends in Ecology & Evolution 10 (7):294–99. https://doi.org/10.1016/0169-5347(95)90031-4 CrossRefGoogle ScholarPubMed
Matthen, M. 1998. “Biological Universals and the Nature of Fear.” Journal of Philosophy 95:105–32. https://doi.org/10.2307/2564712 CrossRefGoogle Scholar
Mayr, E. 1940. “Speciation Phenomena in Birds.” The American Naturalist 74 (752):249–78. https://doi.org/10.1086/280892 CrossRefGoogle Scholar
Mayr, E. 1961. “Cause and Effect in Biology.” Science 134:1501–6.CrossRefGoogle ScholarPubMed
Mayr, E. 1982. The Growth of Biological Thought. Cambridge, MA: Harvard University Press.Google Scholar
Okasha, S. 2002. “Darwinian Metaphysics: Species and the Question of Essentialism.” Synthese 131:191213. https://doi.org/10.1023/A:1015731831011 CrossRefGoogle Scholar
Okasha, S. 2023. “Does the Anti-essentialist Consensus about Species Rest on a Mistake?” http://philsci-archive.pitt.edu/22615/1/Anti-Essentialist%20Consensus%20Paper%20REVISED.pdf Google Scholar
Osada, N., and Akashi, H. 2012. “Mitochondrial–Nuclear Interactions and Accelerated Compensatory Evolution: Evidence from the Primate Cytochrome c Oxidase Complex.” Molecular Biology and Evolution 29 (1):337–46. https://doi.org/10.1093/molbev/msr211 CrossRefGoogle ScholarPubMed
Paterson, H. 1985. “The Recognition Concept of Species.” In Species and Speciation, Transvaal Museum Monograph, 4, edited by Vrba, E., 2129. Pretoria: Transvaal Museum.Google Scholar
Putnam, H. 1975. Mind, Language and Reality. Cambridge: Cambridge University Press.CrossRefGoogle Scholar
Rand, D. M., Haney, R. A., and Fry, A. J. 2004. “Cytonuclear Coevolution: The Genomics of Cooperation.” Trends in Ecology & Evolution 19 (12):645–53. https://doi.org/10.1016/j.tree.2004.10.003 CrossRefGoogle ScholarPubMed
Rosenberg, Alex. 1985. The Structure of Biological Science. New York: Cambridge University Press.CrossRefGoogle Scholar
Slater, Matthew H. 2013. Are Species Real? An Essay on the Metaphysics of Species. New York: Palgrave Macmillan.CrossRefGoogle Scholar
Sober, E. 1980. “Evolution, Population Thinking and Essentialism.” Philosophy of Science 47:350–83. https://doi.org/10.1086/288942 CrossRefGoogle Scholar
Sober, E. 2000. Philosophy of Biology. 2nd ed. Boulder, CO: Westview Press.Google Scholar
Sterelny, K., and Griffiths, P.. 1999. Sex and Death. Chicago: University of Chicago Press.CrossRefGoogle Scholar
Van Valen, L. 1976. “Ecological Species, Multispecies, and Oaks.” Taxon:233–9. https://doi.org/10.2307/1219444 CrossRefGoogle Scholar
Yaacov, B., Arbel-Thau, D. K., Zilka, Y., Ovadia, O., Bouskila, Ah., and Mishmar, D. 2012. “Mitochondrial DNA Variations, But Not Nuclear DNA, Sharply Divides Morphologically Identical Chameleons Along an Ancient Geographic Barrier.” PLoS ONE 7 (3):e31372. https://doi.org/10.1371/journal.pone.0031372CrossRefGoogle ScholarPubMed
Zachos, F. E. 2016. Species Concepts in Biology (vol. 801). Cham: Springer.CrossRefGoogle Scholar
Figure 0

Figure 1. Illustration of mitonuclear interactions between gene products of the mt and N genomes. tRNA – transfer RNA; rRNA – ribosomal RNA; Q – ubiquinone; Cyt c – cytochrome c. Modified from Hill (2017, 395), figure 1. Color online.

Figure 1

Figure 2. Illustration of speciation using the Mitonuclear Compatibility Species Concept. Modified from Hill (2019a, 152), figure 7.3. Color online.