This issue of Mycological Research News features: Nutrient transfer from birch to liverwort via a fungus; The mycosome hypothesis; Neurospora crassa has twice the genes of Schizosaccharomyces pombe; and Mr Bloomfield's Orchard (Notice).

Original papers in this issue include one which provides the first visual evidence of condensation and decondensation during mitosis of rDNA in filamentous fungi, and the first ultrastructural study of the ascomata and asci of the primitive ascomycete genus Neolecta. Molecular phylogenetic studies on Phanerochaete spp., Epulorhiza isolates from tropical orchids, and Pleurotus subgen. Coremiopleurotus spp. are presented. Telomeric fingerprinting is shown to be valuable for karyotype estimation in Helicobasidium mompa, and heterologous diploid nuclei are demonstrated in that species. Recombination in Beauveria bassiana is explored through the production of heterokaryons.

The effects of light of different wavelengths on branch induction in Gigaspora gigantea are described, and the differential expression of selected genes of Glomus intradices on and near roots is documented. Hypodermal suberization is shown to limit infection in barley roots by Chaetomium globosum, and growth of Collybia fusipes in soil is reduced by soil waterlogging and low oxygen levels.

A new Ascobotryozyma has been discovered associated with nematodes in beetle bore holes in the USA.

The following new scientific name is introduced: Ascobotryozyma cognata sp. nov.

We visualised rDNA of two ascomycetes, Cochliobolus heterostrophus and Haematonectria haematococca, by fluorescence in situ hybridisation (FISH) and analysed the condensation state of rDNA during mitosis. Both fungi showed a similar course of change in rDNA condensation corresponding to different mitotic stages. rDNA was decondensed in its entire length at interphase, and became increasingly condensed during prophase. The condensation reached a maximum at metaphase, remaining in that state through anaphase. Metaphase observation revealed the single distal location on a chromosome of rDNA in each fungus. This study provides the first visual evidence of the cyclic change of the condensation/decondensation state of rDNA during mitosis in filamentous fungi by FISH.

Several independent molecular phylogenetic analyses have indicated that the genus Neolecta has a unique position within the Ascomycota. It is the only taxon outside the core-group of filamentous, ascoma-forming ascomycetes that also has the ability to form ascomata. Light and electron microscope studies indicate that hymenial structure and development in Neolecta spp. are unique. Ascogenous hyphae in N. vitellina branched repeatedly and successively to produce asci. Non-ascogenous hyphae were multinucleate, often with nuclei in pairs. Nuclear pairing was particularily prominent in the ascogenous hyphae. A basal septum delimited the dikaryotic ascus. Ascosporogenesis was initiated by nuclear fusion followed by a meiotic and mitotic division to form eight nuclei. The ascus apex was thin with an annular subapical thickening. Ascospores were forcibly released through a ‘split’ in the ascus apex. Woronin bodies were frequently associated with hyphal septa. Attempts to culture N. vitellina and to obtain molecular information from the type species, N. flavovirescens, were unsuccessful. However, N. flavovirescens showed several microscopic characters that indicated close relationships with the two other species in the genus, N. vitellina and N. irregularis. The position of Neolecta spp. within the Ascomycota is discussed.

Phanerochaete is a genus of resupinate homobasidiomycetes that are saprophytic on woody debris and logs. Morphological studies in the past indicated that Phanerochaete is a heterogeneous assemblage of species. In this study the internal transcribed spacer (ITS) region of the nuclear ribosomal DNA was used to test the monophyly of the genus Phanerochaete and to infer phylogenetic relationships of the 24 taxa studied. Maximum parsimony, maximum likelihood, and Bayesian analyses do not support the monophyly of the genus. However, a core group of species represented by Phanerochaete velutina, P. chrysosporium, P. sordida, P. sanguinea and others are closely related and group together in a clade. Other common Phanerochaete species including Phanerochaete rimosa, P. chrysorhiza, P. omnivora, P. avellanea, P. tuberculata, P. flava, and P. allantospora, however, do not cluster with the core Phanerochaete group.

24 isolates of Epulorhiza were obtained from the roots and protocorms of orchids in Singapore. Two groups were distinguished based on morphological and cultural characteristics. Group 1 comprised 20 isolates which were identified as E. repens, while those in group 2 were identified as E. calendulina-like Rhizoctonia. The ITS-5.8S rDNA sequence identity ranged from 88–100% among isolates of E. repens and six sub-groups were further delineated. The sequence identity was 98–100% among E. calendulina-like Rhizoctonia isolates. The sequence identity between E. repens isolates and E. calendulina-like Rhizoctonia isolates ranged from 18–44%. Apparently, isolates from both groups 1 and 2 were genetically distinct. Phylogenetic analysis showed that the distribution of the isolates correlated with the sites and the hosts from which the fungi were isolated. No matching sequences have been found in the GenBank database for the ITS region of E. repens and E. calendulina-like Rhizoctonia.

Isolates of Pleurotus cystidiosus and P. smithii were studied to verifie the occurrence of P. cystidiosus instead of P. smithii in South America. The two species are mainly separated by the growth rate of the anamorph in culture, the morphology of the anamorph and teleomorph, intercompatibility tests, and genetic variability. In order to see if the isolate found in Brazil and previously identified as Antromycopsis macrocarpa (the anamorph of P. cystidiosus) belongs to P. cystidiosus, a species with a world wide distribution, or to P. smithii which is restricted to Mexico and South America, or if P. cystidiosus and P. smithii are the same species, isolates of different geographic origins were studied. Growth rate in culture, mono-dikaryotic matings, and genetic variability determined by RADP were investigated. The results show that the criteria used to separate the two species are unsatisfactory, and that P. smithii should be considered a synonym of P. cystidiosus; this extends the distribution of this later species to Central and South America.

We hybridized the telomere-associated DNA sequence pTel46 isolated from Coprinus cinereus with Helicobasidium mompa genomic DNA. The hybridized fragments were more sensitive to Bal31 nuclease than those that were not hybridized, suggesting that they were located at the ends of chromosomes in H. mompa. The hybridization profile can be used to estimate chromosome number, since the number of chromosomes in a single basidiospore isolate is about half that in putative parent strains. Thus, single basidiospore and field isolates might be homokaryons and heterokaryons respectively. We found telomere-linked restriction fragment length polymorphisms (RFLPs) in strains of H. mompa isolated from field and individual basidiospores. Thus, this marker appears to be an excellent tool with which to reveal the considerable polymorphism of H. mompa and to identify strains. The RFLP was not found among several strains of the same mycelial compatibility group (MCG) isolated from the same field, suggesting that strains belonging to an MCG group are identical.

Allelic genes hga1-1 and hga1-2, which encode G protein alpha subunit in the violet root rot fungus, Helicobasidium mompa, were sequenced and characterized. Restriction fragment polymorphism (RFLP) analysis determined that the gene is present as a single locus in the single basidiospore isolates, while strain V169 possessed both alleles of this gene. Therefore, although basidiospore isolates are dikaryon, they are homokaryotic. Field-isolated strain V169, the putative parent strain, is a dikaryotic heterokaryon. Allelic genes hga1-1 and hga1-2 segregated in almost a 1[ratio ]3 ratio among single basidiospore isolates from the same fruiting body. Moreover, the copy number of hga1-1 was found to be less than that of hga1-2 in the V169 strain. These results suggest that one of the nuclei in the V169 parent strain is homozygous diploid and the other heterozygous diploid. This parent strain produced four homokaryotic and dikaryon basidiospores on each basidium.

To understand the nature of recombination processes in Beauveria bassiana, double-auxotrophic complementary mutant strains were used to produce six heterokaryons by three different methods. Conidia from these heterokaryons were plated on selective media and stable haploid (but not diploid) recombinants were isolated. Single colony recombinants were recovered with both parental and non-parental random amplified polymorphic DNA (RAPD) profiles. These results suggest that a range of different recombination mechanisms may be occurring in B. bassiana.

The first action spectrum for a photo-induced response of an arbuscular mycorrhizal fungus is reported. At low light intensity, the responsive wavelengths for light-induced hyphal branching of the primary germ tube of Gigaspora gigantea were determined to be in the blue to UV-A range. The action spectrum showed the greatest stimulation of branching occurred around 390 nm although a shoulder was observed between 360–370 nm. A second major peak of light-induced branching occurred at 430 nm. The exposure of specific areas of the germ tube to high intensity blue light for a short period led to several interesting observations. By exposing 2 mm segments (0–2, 2–4, 4–6, etc.) or 3 mm segments away from the tip, it was determined that photoinduction of hyphal branches could occur anywhere along the axis of a growing germ tube except in the apical 2 mm. When 3 mm segments were exposed at greater distances from the tip (6–9, 9–12, and up to 33–36 mm), branches frequently formed in areas not directly exposed to light. The branches were usually in clusters which were spaced approximately 3 or 6 mm apart. Since light scattering could be ruled out, these results indicated that the exposure sites and sites of hyphal branching did not necessarily coincide and suggested the probable involvement of a second messenger during this blue light-induced event.

Relative quantitative RT-PCR and western blotting were used to investigate the expression of three genes with potentially regulatory functions from the arbuscular mycorrhizal fungus Glomus intraradices in symbiosis with tomato and barley. Standardisation of total RNA per sample and determination of different ratios of plant and fungal RNA in roots as colonisation proceeded were achieved by relative quantitative RT-PCR using universal (NS1/NS21) and organism-specific rRNA primers. In addition, generic primers were designed for amplification of plant or fungal β-tubulin genes and for plant glyceraldehyde-3-phosphate dehydrogenase (GAPDH) genes as these have been suggested as useful controls in symbiotic systems. The fungal genes Ginmyc1 and Ginhb1 were expressed only in the external mycelium and not in colonised roots at both mRNA and protein levels, with the proteins detected almost exclusively in the insoluble fractions. In contrast, mRNA of Ginmyc2 was identified in both external and intraradical mycelium. In mycorrhizal roots, Ginmyc2 and fungal β-tubulin mRNAs increased in proportion to fungal rRNA as colonisation proceeded, suggesting that accumulation reflected intraradical fungal growth. Fungal α-tubulin protein and β-tubulin mRNA both appeared to be more abundantly accumulated in AM hyphae within heavily colonised roots than in external hyphae, relative to fungal rRNA. Tomato GAPDH mRNA accumulation was proportional to tomato rRNA, but accumulation of tomato β-tubulin mRNA was reduced in colonised roots compared to non-mycorrhizal roots. These results provide novel evidence of differential spatial and temporal regulation of AM fungal genes, indicate that the expression of tubulin genes of both plant and fungus may be regulated during colonisation and validate the use of multiple ‘control’ genes in analysis of mycorrhizal gene expression.

Plant pathogenesis by fungi is known to be dependent on the host genotype, the virulence of the pathogen and certain environmental conditions influencing fungal establishment. Previously, it has been shown that Chaetomium globosum, a fungus well-characterized for its biocontrol potential, causes necrosis on barley roots grown in Murashige and Skoog (MS)-agar. Using MS-agar and aeroponic culture as axenic plant growth systems, C. globosum pathogenesis was analyzed with serological and histological methods. Irrespective of the growth system, C. globosum infected the root epidermis. Roots grown in MS-agar were extensively colonized intercellularly and intracellularly up to the inner cortex and the tissue underwent necrosis. In contrast, roots grown in aeroponic culture were not colonized beyond the epidermis and the roots appeared healthy. Histochemical analyses revealed that hypodermal suberization stopped fungal invasion. In root tips known to lack suberization, epidermal papilla formation reduced overall infection frequency. The results indicate that specific environmental conditions are important for infection and disease expression in barley roots. Infection is restricted by two spatial and temporal distinct defence mechanisms: (1) papillae in root tips retarding fungal invasion; and (2) suberization of hypodermal cells blocking fungal radial growth.

Collybia fusipes is a common root rot fungus in mature pedunculate oak forest, that causes drastic destruction of the tree root systems, especially in dry or mildly waterlogged soils. We wanted to check, under controlled conditions or in forest ecosystems, whether reduced O2 during saturation of the soil by water could interact with disease evolution. Susceptibility of waterlogged oak seedlings to C. fusipes was tested in a greenhouse and the survival of the pathogen in woody substrates was assessed in hydromorphic soils in a forest. A direct and detrimental effect of soil waterlogging on C. fusipes survival was evidenced both under controlled conditions and in forest stands. Growth of C. fusipes mycelium on agar media was monitored under low O2 mole fraction and compared to that of Armillaria mellea and Heterobasidion annosum. A drastic reduction in mycelial growth was evidenced in C. fusipes and H. annosum but not in A. mellea.

A new species of Ascobotryozyma, A. cognata sp. nov. (anamorph Botryozyma cognata), was isolated from beetle galleries in Idaho, USA. A. cognata was found on the surface of free-living nematodes, Panagrellus dubius, collected from galleries created by the long-horned beetle Saperda calcarata in Populus (aspen), and the weevil Cryptorhynchus lapathi in Salix (willow). A. cognata isolates were collected from similar habits and in relatively close proximity to those of A. americana, the only species described from North America. The recognition of A. cognata as a distinct species was supported by morphological and molecular data. Thallus cells of A. cognata were significantly shorter than those of A. americana. Low DNA reassociation values, notably different randomly amplified polymorphic DNA (RAPD), inter-sequence simple repeat (ISSR), and amplified fragment-length polymorphic (AFLP) fingerprints, and sequence divergence in both the D1/D2 domain of the nuc-LSU rDNA and an additional unidentified region were all consistent with the recognition of a new species.