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Theoretical calculations of [AlO4/M+]0 defects in quartz and crystal-chemical controls on the uptake of Al

Published online by Cambridge University Press:  05 July 2018

S. M. Botis*
Affiliation:
Department of Geological Sciences, University of Saskatchewan, Saskatoon SK S7N 5E2, Canada
Yuanming Pan
Affiliation:
Department of Geological Sciences, University of Saskatchewan, Saskatoon SK S7N 5E2, Canada
*

Abstract

The [AlO4/M+]0 (where M = H, Li, Na and K) defects in α-quartz have been investigated by ab initio calculations at the density functional theory (DFT) level, using the CRYSTAL06 code, 72-atom supercells, and all-electron basis sets. Our DFT calculations yielded substantially improved results than previous cluster calculations with minimal basis sets. For example, the [AlO4/M+(a<)]0 defects with M = H, Li and Na have been shown to be more stable than their [AlO4/M+(a>)]0 structural analogues (where a> and a< denote the location of the charge-compensating ion on the long-bond and short-bond side respectively), correctly predicting the common occurrence of paramagnetic [AlO4/M+(a>)]+ centres. In addition, the [AlO4/K+]0 defects have been investigated for the first time and are shown to be stable in quartz. Moreover, our calculations confirm previous suggestions that incorporation of the [AlO4/M+]0 defects results in significant structural relaxations that extend at least to the nearest Si atoms and give Li—O and Na—O bond distances in better agreement with the experimentally obtained values. The present theoretical results on the [AlO4/M+]0 defects provide a more complete picture for the coupled Al3+M+ substitutions and hence new insights into crystal-chemical controls on the uptake of Al in quartz.

Type
Research Article
Copyright
Copyright © The Mineralogical Society of Great Britain and Ireland 2009

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References

Allan, D.C. and Teter, M.P. (1990) Local density approximation total energy calculations for silica and titania structure and defects. Journal of American Ceramic Society, 73, 3247—3250.CrossRefGoogle Scholar
Branlund, J.M. and Hofmeister, A.M. (2007) Thermal diffusivity of quartz to 1,000°C: Effects of impurities and the a-b phase transition. Physics and Chemistry of Minerals, 34, 581—595.CrossRefGoogle Scholar
Chelikowsky, J.R., King, H.E., Troullier, N., Martins, J.L. and Glinnemann, J. (1990) Structural properties of α-quartz near the amorphous transition. Physical Review Letters, 65, 3309—3312.CrossRefGoogle ScholarPubMed
Civalleri, B., Ferrari, A.M., Llunell, M., Orlando, R., Merawa, M. and Ugliengo, P. (2003) Cation selectivity in alkali-exchanged chabazite: an ab- initio periodic study. Chemistry of Materials, 15, 39964004.CrossRefGoogle Scholar
Cohen, A.J. (1956) Color centers in the alphα-quartz called amethyst. American Mineralogist, 41, 874—891.Google Scholar
Cora, F. and Pisani, C. (1994) A quantum-mechanical ab-initio simulation of neutral and charged point- defects in alphα-quartz. Modelling and Simulation in Material Science and Engineering, 2, 965—974.CrossRefGoogle Scholar
Demars, C., Pagel, M., Deloule, E. and Blanc, P. (1996) Cathodoluminescence of quartz from sandstones: Interpretation of the UV range by determination of trace element distributions and fluid-inclusion P-T-X properties in authigenic quartz. American Mineralogist, 81, 891—901.CrossRefGoogle Scholar
Dennen, W.H., Blackbut, W.H. and Quesada, A. (1970) Aluminum in quartz as a geothermometer. Contributions to Mineralogy and Petrology, 27, 332—342.CrossRefGoogle Scholar
Dickson, R.S. and Weil, J.A. (1990) The magnetic properties of the oxygen-hole aluminum centres in crystalline SiO2. IV. [AlO4/Na+]. Canadian Journal of Physics, 68, 630—642.CrossRefGoogle Scholar
Dovesi, R., Ermondi, E., Ferrero, E., Pisani, C. and Roetti, C. (1983) Hartree-Fock study of lithium hydride with the use of a polarizable basis set, Physical Review B, 29, 3591—3600.Google Scholar
Dovesi, R., Pisani, C., Roetti, C. and Silvi, B. (1987) The electronic structure of α-quartz: A periodic Hartree-Fock calculation. Journal of Chemical Physics, 86, 6967—6971.CrossRefGoogle Scholar
Dovesi, R., Roetti, C., Freyria Fava, C., Prencipe, M. and Saunders, V.R.(1991) On the elastic properties of lithium, sodium and potassium oxide. An ab initio study. Chemical Physics, 156, 1119.CrossRefGoogle Scholar
Dovesi, R., Saunders, V.R., Roetti, C., Orlando, R., Zicovich-Wilson, C.M., Pascale, F., Civalleri, B., Doll, K., Harrison, N.M., Bush, I.J., D’Arco, P. and Llunnell, M. (2006) CRYSTAL2006, User's Manual;http://www.crystal.unito.it, University of Torino, Torino, Italy.Google Scholar
Flem, B., Larsen, R.B., Grimstvedt, A. and Mansfeld, J. (2002) In situ analysis of trace elements in quartz by using laser ablation inductively coupled plasma mass spectrometry. Chemical Geology, 182, 237—247.CrossRefGoogle Scholar
Gnani, E., Reggiani, S., Colle, R. and Rudan, M. (2000) Band-structure calculations of SiO2 by means of Hartree-Fock and density-functional techniques. IEEE Transactions on electron devices, 47, 17951803.CrossRefGoogle Scholar
Götze, J. and Plötze, M. (1997) Investigation of trace- element distribution in detrital quartz by electron paramagnetic resonance (EPR). European Journal of Mineralogy, 9, 529—537.CrossRefGoogle Scholar
Götze, J., Plötze, M., Tichomirowa, M., Fuchs, H. and Pilot, J. (2001) Aluminium in quartz as an indicator of the temperature of formation of agate. Mineralogical Magazine, 65, 407—413.CrossRefGoogle Scholar
Götze, J., Plötze, M., Graupner, T., Hallbauer, D.K. and Bray, C.J. (2004) Trace element incorporation into quartz: a combined study by ICP-MS, electron spin resonance, cathodoluminescence, capillary ion analysis, and gas chromatography. Geochimica et Cosmochimica Acta, 68, 3741—3759.CrossRefGoogle Scholar
Götze, J., Plötze, M. and Trautmann, T. (2005) Structure and luminescence characteristics of quartz from pegmatites. American Mineralogist, 90, 13—21.CrossRefGoogle Scholar
Griffiths, J.H.E., Owen, J. and Ward, E.M. (1954) Paramagnetic resonance in neutron irradiated diamond and smoky quartz. Nature, 174, 439—440.Google Scholar
Hervig, R.L. and Peacock, S.M. (1989) Implications of trace element zoning in deformed quartz from the Santa Catalina mylonite zone. The Journal of Geology, 89, 343—350.Google Scholar
Hongu, H., Yoshiasa, A., Kurosawa, M., Ohkawa, M., Kitagawa, R. and Takeno, S. (2002). High Al contents in quartz and hydrothermal alteration of the ‘Roseki’ deposits in the Mitsuishi district,Southwest Japan. Journal of Mineralogical and Petrological Sciences, 97, 168—176.CrossRefGoogle Scholar
Howarth, D.F., Mombourquette, M.J. and Weil, J.A. (1997) The magnetic properties of the oxygen-hole aluminum centers in crystalline SiO2. V. 17O-enriched [AlO4/Li]+ and dynamics thereof. Canadian Journal of Physics, 75, 99—115.Google Scholar
Kronenberg, A.K. (1994) Hydrogen speciation and chemical weakening of quartz. Pp. 123—176 in: Silica: Physical Behavior, Geochemistry and Materials Applications (P.J. Heaney, C.T. Prewitt and G.V. Gibbs, editors). Reviews in Mineralogy, 29, Mineralogical Society of America, Chantilly, Virginia, USA.Google Scholar
Landtwing, M.R. and Pettke, T. (2005) Relationships between SEM-cathodoluminescence response and trace-element composition of hydrothermal vein quartz. American Mineralogist, 90, 122—131.CrossRefGoogle Scholar
Lee, C., Yang, W. and Parr, R.G. (1988) Development of the Colle-Salvetti correlation-energy formula into a functional of the electron density. Physical Review B, 37, 785—789.CrossRefGoogle ScholarPubMed
Lees, N.S., Walsby, C.J., Williams, J.A.S., Weil, J.A. and Claridge, R.F.C. (2003) EPR of a hydrogen/ double-lithium centre in α-quartz. Physics and Chemistry of Minerals, 30, 131141.CrossRefGoogle Scholar
Le Page, Y., Calvert, L.D. and Gabe, E.J. (1980) Parameter variation in low quartz between 94 and 298 K. Journal of Physics and Chemistry of Solids, 41, 721—725.CrossRefGoogle Scholar
Leslie, M. (1989) Calculation of the energies of point defects in quartz. Journal of the Chemical Society- Faraday Transactions II, 89, 407—413.Google Scholar
Liu, F., Garofalini, S.H., King-Smith, D. and Vanderbilt, D. (1994) First-principles study of crystalline silica, Physical Review B, 49, 1252812534.CrossRefGoogle ScholarPubMed
Mackey, J.H. (1963) EPR study of impurity-related color centers in germanium-doped quartz. The Journal of Chemical Physics, 39, 74—83.CrossRefGoogle Scholar
Mackey, J.H., Boss, J.W. and Wood, D.E. (1970) EPR study of substitutional-aluminum-related hole centers in synthetic α-quartz. Journal of Magnetic Resonance, 3, 44—54.Google Scholar
Mao, M., Nilges, M.J. and Pan, Y.M. (2009) Radiation- induced defects in apophyllites. II. An O- center and related O--O- pairs in hydroxylapophyllite. European Journal of Mineralogy (in press).CrossRefGoogle Scholar
Merawa, M., Labeguerie, P., Ugliengo, P., Doll K. and Dovesi R. (2004) The structural, electronic and vibrational properties of LiOH and NaOH: an ab initio study, Chemical Physics Letters, 387, 453—459.CrossRefGoogle Scholar
Miyoshi, N., Yamaguchi, Y. and Makino, K. (2005) Successive zoning of Al and H in hydrothermal vein quartz. American Mineralogist, 90, 310—315.CrossRefGoogle Scholar
Mombourquette, M.J. and Weil, J.A. (1985) Ab initio self-consistent-field molecular-orbital calculations on AlO4 centers in alphα-quartz. II. Canadian Journal of Physics, 63, 1282—1293.CrossRefGoogle Scholar
Monkhorst, H.J. and Pack, J.D. (1976) Special points for Brillouin-zone integrations. Physical Review B, 13, 5188—5192.CrossRefGoogle Scholar
Montanari, B., Civalleri, B., Zicovich-Wilson, C.M. and Dovesi, R. (2006) Influence of the exchange- correlation functional in all-electron calculations of the vibrational frequencies of corundum (a-Al2O3). International Journal of Quantum Chemistry, 106, 17031714.CrossRefGoogle Scholar
Müller, A., Wiedenbeck, M., Van Den Kerkhof, A.M., Kronz, A. and Simon, K. (2003) Trace elements in quartz — a combined electron microprobe, secondary ion mass spectrometry, laser-ablation ICP-MS, and cathodoluminescence study. European Journal of Mineralogy, 15, 747—763.Google Scholar
Müller, A., Ihlen, P.M. and Kronz, A. (2008) Quartz chemistry in polygeneration Sveconorwegian pegmatites Froland, Norway. European Journal of Mineralogy, 20, 447—463.Google Scholar
Nada, R., Catlow, C.R.A., Dovesi, R. and Pisani, C. (1990) An ab-initio Hartree-Fock study of α-quartz and stishovite. Physics and Chemistry of Minerals, 17, 353—362.CrossRefGoogle Scholar
Nilges, M.J., Pan, Y.M. and Mashkovtsev, R.I. (2008) Radiation-damage-induced defects in quartz. I. Single-crystal W-band EPR study of hole centers in an electron-irradiated quartz. Physics and Chemistry of Minerals, 35, 103115.CrossRefGoogle Scholar
Nilges, M.J., Pan, Y.M. and Mashkovtsev, R.I. (2009) Radiation-damage-induced defects in quartz. III. Single-crystal W-band EPR, ENDOR and ESEEM study of a peroxy radical. Physics and Chemistry of Minerals. 36, 61—73.CrossRefGoogle Scholar
Nuttall, R.H.J. and Weil, J.A. (1981a) The magnetic properties of the oxygen-hole aluminum centers in crystalline SiO2. I. [AlO4]+ . Canadian Journal of Physics, 59, 1886—1892.Google Scholar
Nuttall, R.H.J. and Weil, J.A. (1981b) The magnetic properties of the oxygen-hole aluminum centers in crystalline SiO2. II. [AlO4/H+]+ and [AlO4/Li+]+ . Canadian Journal of Physics, 59, 1709—1718.Google Scholar
Pacchioni, G., Frigoli, F., Ricci, D. and Weil, J.A. (2001) Theoretical description of hole localization in a quartz Al center: The importance of exact electron exchange. Physical Review B, 63, 054102.Google Scholar
Pan, Y.M., Nilges, M.J. and Mashkovtsev, R.I. (2008) Radiation-induced defects in quartz. II. Singlecrystal W-band EPR study of a natural citrine quartz. Physics and Chemistry of Minerals, 35, 387—397.CrossRefGoogle Scholar
Pan, Y.M., Nilges, M.J. and Mashkovtsev, R.I. (2009) Radiation-induced defects in quartz: multifrequency EPR study and DFT modelling of new peroxy radicals. Mineralogical Magazine, 73, XXX—XXX.CrossRefGoogle Scholar
Pankrath, R. (1991) Polarized IR spectra of synthetic smoky quartz. Physics and Chemistry of Minerals, 17, 681689.CrossRefGoogle Scholar
Perny, B., Eberhardt, P., Ramseyer, K., Mullis, J. and Pankrath, R. (1992) Microdistribution of Al, Li and Na in a quartz: possible causes and correlation with short-lived cathodoluminescence. American Mineralogist, 77, 534544.Google Scholar
Robb, L.J. (2004) Introduction to Ore-Forming Processes. John Wiley & Sons, New York, 384 pp.Google Scholar
Rusk, B.G., Reed, M.H., Dilles, J.H. and Kent, A.J.R. (2006) Intensity of quartz cathodoluminescence and trace-element content in quartz from the porphyry copper deposit at Butte, Montana. American Mineralogist, 91, 13001312.CrossRefGoogle Scholar
Schnadt, R. and Schneider, J. (1971) The electronic structure of the trapped-hole center in smoky quartz. Physics of Condensed Matter, 11, 1942.Google Scholar
Scotford, D.M. (1975) Test of aluminum in quartz as a geothermometer. American Mineralogist, 60, 139142.Google Scholar
Sherman, D.M. (2007) Complexation of Cu+ in hydrothermal NaCl brines: ab initio molecular dynamics and energetics. Geochimica et Cosmochimica Acta, 71, 714722.CrossRefGoogle Scholar
Smith, J.V. and Steele, I.M. (1984) Chemical substitution in silica polymorphs. Neues Jahrbuch fur Mineralogie Abhandlungen, 3, 137144.Google Scholar
To, J., Sokol, A.A., French, S.A., Kaltsoyannis, N. and Catlow, R. (2005) Hole localization in [AlO4]0 defects in silica materials. The Journal of Chemical Physics, 122, 144704.CrossRefGoogle Scholar
Walsby, C.J., Less, N.S., Claridge, R.F.C. and Weil, J.A. (2003) The magnetic properties of oxygen-hole aluminum centers in crystalline SiO2. VI. A stable AlO4/Li centre. Canadian Journal of Physics, 81, 583598.CrossRefGoogle Scholar
Wark, D.A. and Watson, E.B. (2006) TitaniQ: a titanium-in-quartz geothermometer. Contributions to Mineralogy and Petrology, 152, 743754.CrossRefGoogle Scholar
Watt, G.R., Wright, P., Galloway, S. and McLean, C. (1997) Cathodoluminescence and trace element zoning in quartz phenocrysts and xenocrysts. Geochimica et Cosmochimica Acta, 61, 43374348.CrossRefGoogle Scholar
Weil, J.A. (1984) A review of electron spin spectroscopy and its applications to the study of paramagnetic defects in crystalline quartz. Physics and Chemistry of Minerals, 10, 149165.CrossRefGoogle Scholar
Weil, J.A. (2000) A demi-century of magnetic defects in α-quartz. Pp. 197-212 in: Defects in SiO2 and Related Dielectrics: Sciences and Technology (G. Pacchioni, L. Skuja and D.L. Griscom, editors). Kluwer Academic, The Netherlands.Google Scholar
Wenger, M. and Armbruster, T. (1991) Crystal chemistry of lithium: oxygen coordination and bonding. European Journal of Mineralogy, 3, 387399.CrossRefGoogle Scholar
Wood, R.M. and Palenik, G.J. (1999) Bond valence sums in coordination chemistry. Sodium-oxygen complexes. Inorganic Chemistry, 38, 39263930.CrossRefGoogle Scholar