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Minerals, metals and molecules: ore and environmental mineralogy in the new millennium

Published online by Cambridge University Press:  05 July 2018

D. J. Vaughan*
Affiliation:
Department of Earth Sciences and Williamson Research Centre for Molecular Environmental Science, University of Manchester, Manchester M13 9PL, UK
R. A. D. Pattrick
Affiliation:
Department of Earth Sciences and Williamson Research Centre for Molecular Environmental Science, University of Manchester, Manchester M13 9PL, UK
R. A. Wogelius
Affiliation:
Department of Earth Sciences and Williamson Research Centre for Molecular Environmental Science, University of Manchester, Manchester M13 9PL, UK
*

Abstract

Aspects of the (bio)geochemical cycling of metals (including Fe, Cu, Pb, Zn, Hg, As, Sb, U, Tc, Np) at or near the Earth's surface are discussed with reference to the recent work of the authors. Key stages of the breakdown of metalliferous minerals, transport of metals as solution complexes or colloidal precipitates, and interaction of metals in solution with the surfaces of minerals are considered. Emphasis is on molecular-scale observations using techniques such as scanning probe microscopy, photoelectron and (synchrotron) X-ray spectroscopies. The importance of the biological/mineralogical interface is also emphasized with reference to the bacterial colonization of mineral surfaces and formation of biofilms, and their influence on mineral surface reactivity and flow of fluids through rocks and sediments. Also noted is the importance of relating molecular and micro-scale observations to macroscopic phenomena. Molecular-scale understanding is central to attempts to model many processes of relevance in mineral exploration and exploitation, and in the containment of hazardous wastes and remediation of polluted areas. Mineralogists have a central role to play in the relevant environmental sciences and technologies.

Type
Research Article
Copyright
Copyright © The Mineralogical Society of Great Britain and Ireland 2002

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References

Banfield, J.F. and Nealson, K.H., editors (1997) Geomicrobiology: Interactions between Microbes and Minerals. Reviews in Mineralogy, 35. Mineralogical Society of America, Washington, D.C.CrossRefGoogle Scholar
Banfield, J.F. and Welch, S.A. (2000) Microbial controls on the mineralogy of the environment. Pp. 173196 in: Environmental Mineralogy (Vaughan, D.J. and Wogelius, R.A., editors), EMU Notes in Mineralogy, 2. Eötvös University Press, Budapest.Google Scholar
Becker, U., Munz, A., Lennie, A., Thornton, G. and Vaughan, D.J. (1997) The atomic and electronic structure of the (001) surface of monoclinic pyrrhotite (Fe7S8) as studied by using STM, LEED and quantum mechanical calculations. Surface Science, 389, 6687.CrossRefGoogle Scholar
Benning, L.G. and Barnes, H.L. (1998) In situ determination of the stability of iron monosulphides and kinetics of pyrite formation. Mineralogical Magazine, 62A, 151152.CrossRefGoogle Scholar
Brady, P.V. (editor) (1996) Physics and Chemistry of Mineral Surfaces. CRC Series Chemistry and Physics of Surfaces and Interfaces. CRC Press, Boca Raton, Florida, USA.Google Scholar
Brydie, J.R., Wogelius, R.A., Vaughan, D.J., Merrifield, C. and Boult, S. (2001) Bacterial colonization of geological porous media: effects on hydraulic conductivity and trace metal transport behaviour. Pp. 3338 in: Biofilm Community Interactions: Chance or Necessity? (Gilbert, P., Allison, D., Brading, M., Verran, J. and Walker, J., editors). Bioline, Cardiff, UK.Google Scholar
Brydie, J.R., Wogelius, R.A., Vaughan, D.J., Merrifield, C., Boult, S., Allison, D. and Gilbert, P. (2002) Bacterial biofilm development within a simulated near surface fracture: biofilm structure and implications for fluid flow. Geology (submitted).Google Scholar
Cabri, L.J. and Vaughan, D.J. (1998) Modern Approaches to Ore and Environmental Mineralogy. Mineralogical Association of Canada, Ottawa.Google Scholar
Chamberlain, A.H.L. (1992) The role of adsorbed layers in bacterial adhesion. Pp. 5967 in: Biofilm Science and Technology (Melo, L.F., Bott, T.R., Fletcher, M. and Capdeville, B., editors), Kluwer Academic Publishers, Dordrecht, The Netherlands.CrossRefGoogle Scholar
Characklis, W.G. and Marshall, K.C., editors (1990) Biofilms. John Wiley & Sons, New York.Google Scholar
Condon, N., Liebsle, F., Lennie, A., Murray, P., Vaughan, D.J. and Thornton, G. (1995) Bi–phase ordering on surfaces. Physical Review Letters, 75, 19611964.CrossRefGoogle Scholar
Cotter-Howells, J.D., Campbell, L., Valsami-Jones, E. and Batchelder, M., editors (2000) Environmental Mineralogy: Microbial Interactions, Anthropogenic Influences, Contaminated Land and Waste Disposal. Mineralogical Society Special Series, 9, Mineralogical Society, London.Google Scholar
Craig, J.R. and Vaughan, D.J. (1994) Ore Microscopy and Ore Petrography. Wiley-Interscience, New York.Google Scholar
Cutting, R.S., Muryn, C.A., Thornton, G.T., Lennie, A.R. and Vaughan, D.J. (2002 a) Reaction of Fe3O4 (111) with H2O (in prep.).Google Scholar
Cutting, R.S., Muryn, C.A., Thornton, G., Lennie, A.R. and Vaughan, D.J. (2002 b) Identifying terminations of Fe3O4 (111) – (1 x 1) surfaces using formate as a chemical probe. Surface Science (submitted).Google Scholar
Duke, C.B. (1988) Atomic and electronic structure of tetrahedrally coordinated compound semiconductor interfaces. Journal of Vacuum Science and Technology – Vacuum Surfaces and Films, 6, 19571962.CrossRefGoogle Scholar
Farquhar, M.L., Wincott, P.L., Wogelius, R.A. and Vaughan, D.J. (2002) Electrochemical oxidation of the chalcopyrite surface; an XPS and AFM study in solution at pH 4. Applied Surface Science (in press).CrossRefGoogle Scholar
Farquhar, M., Charnock, J., England, K. and Vaughan, D.J. (1996) Adsorption of Cu(II) on the (001) plane of mica: a REFLEXAFS and XPS study. Journal of Colloid and Interface Science, 177, 561567.CrossRefGoogle Scholar
Furrer, G. and Stumm, W. (1986) The coordination chemistry of weathering: I. Dissolution kinetics of α-Al2O3 and BeO. Geochimica et Cosmochimica Acta, 50, 18471860.CrossRefGoogle Scholar
Garland, T.R., Catlado, D.A., McFadden, K.M., Schreckhise, R.G. and Wildung, R.E. (1983) Comparative behaviour of 99Tc, 129I, 127I and 137Cs in the environment adjacent to a fuel reprocessing facility. Health Physics, 57, 239245.Google Scholar
Helz, G.R., Charnock, J.M., Vaughan, D.J. and Garner, C.D. (1993) Multinuclearity of aqueous copper and zinc bisul. de complexes: An EXAFS investigation. Geochimica et Cosmochimica Acta, 57, 1525.CrossRefGoogle Scholar
Helz, G., Tossell, J.A., Charnock, J.M., Pattrick, R.A.D., Vaughan, D.J. and Garner, C.D. (1995) Oligomerization in As(III) sul. de solutions: theoretical constraints and spectroscopic evidence. Geochimica et Cosmochimica Acta, 59, 45914606.CrossRefGoogle Scholar
Hochella, M.F. Jr. and White, A.F., editors (1990) Mineral-Water Interface Geochemistry. Reviews in Mineralogy, 23. Mineralogical Society of America, Washington, D.C.CrossRefGoogle Scholar
Lennie, A. and Vaughan, D.J. (1996) Spectroscopic studies of iron sulfide formation and phase relations at low temperatures. Pp. 117131 in: Mineral Spectroscopy: a Tribute to Roger G. Burns. Geochemical Society Special Publication, 5. Washington, D.C.Google Scholar
Lennie, A.R., Condon, N.G., Leibsle, F.M., Murray, P.W., Thornton, G. and Vaughan, D.J. (1996) Structures of Fe3O4 (111) surfaces observed by scanning tunnelling microscopy. Physical Review B, 53(15), 1024410253.CrossRefGoogle Scholar
Little, B.J., Wagner, P.A. and Lewandowski, Z. (1997) Spatial relationships between bacteria and mineral surfaces. Pp. 123159 in: Geomicrobiology: Interaction between Microbes and Minerals (Banfield, J.F. and Nealson, K.H., editors). Reviews in Mineralogy, 35. Mineralogical Society of America, Washington, D.C.CrossRefGoogle Scholar
Mosselmans, J.F.W., Helz, G.R., Pattrick, R.A.D., Charnock, J.M. and Vaughan, D.J. (2000) A study of speciation of Sb in bisulfide solutions by X-ray absorption spectroscopy. Applied Geochemistry, 15, 879889.CrossRefGoogle Scholar
Moyes, L.N., Parkman, R.H., Charnock, J.M., Vaughan, D.J., Livens, F.R., Hughes, C.R. and Braithwaite, A. (2000) U uptake on goethite, lepidocrocite, muscovite and mackinawite. Environmental Science and Technology, 34, 10621064.CrossRefGoogle Scholar
Moyes, L.N., Jones, M.J., Reed, W.A., Livens, F.R., Charnock, J.M., Mosselmans, J.F.W., Hennig, C., Vaughan, D.J. and Pattrick, R.A.D. (2002) An X-ray absorption spectroscopy study of neptunium (V) reactions with mackinawite (FeS). Environmental Science and Technology, 36, 179183.CrossRefGoogle Scholar
Moyes, L.N., Charnock, J.M., Pattrick, R.A.D., Livens, F.R. and Vaughan, D.J. (in prep.) Structural development of amorphous HgS precipitates.Google Scholar
Parkman, R., Curtis, C.D., Vaughan, D.J. and Charnock, J. (1996) Metal fixation and mobilisation in the sediments of the Afon Goch Estuary-Dulas Bay, Anglesey. Applied Geochemistry, 11, 203210.CrossRefGoogle Scholar
Parkman, R.H., Charnock, J.M., Bryan, N.D., Livens, F.R. and Vaughan, D.J. (1999) Reactions of copper and cadmium ions in aqueous solutions with goethite, lepidocrocite, mackinawite and pyrite. American Mineralogist (Prewitt Volume), 84, 407419.CrossRefGoogle Scholar
Pattrick, R.A.D., Mosselmans, J., Charnock, J., England, K., Helz, G., Garner, C.D. and Vaughan, D.J. (1997) The structure of amorphous copper sulphide precipitates: an X-ray absorption study. Geochimica et Cosmochimica Acta, 61, 20232036.CrossRefGoogle Scholar
Pattrick, R.A.D., Mosselmans, J.F.W., Charnock, J.M. and Vaughan, D.J. (1999) Structural development of amorphous CuS and HgS. Abstracts, European Union of Geosciences, Biennial meeting, Strasbourg.Google Scholar
Rimstidt, D. and Vaughan, D.J. (2002) Pyrite oxidation: a state of the art assessment of the reaction mechanism. Geochimica et Cosmochimica Acta, (in press).CrossRefGoogle Scholar
Vaughan, D.J. and Pattrick, R.A.D., editors (1995) Mineral Surfaces. Mineralogical Society Special Series, 5, Chapman & Hall, London.Google Scholar
Vaughan, D.J. and Wogelius, R.A., editors (2000) Environmental Mineralogy. EMU Notes in Mineralogy, 2. Eötvös University Press, Budapest.Google Scholar
Vaughan, D.J., England, K., Kelsall, G. and Yin, Q. (1995) Electrochemical oxidation of chalcopyrite (CuFeS2) and the related metal-enriched derivatives Cu4Fe5S8, Cu9Fe9S16 and Cu9Fe8S16 . American Mineralogist, 80, 725731.CrossRefGoogle Scholar
Wharton, M.J., Atkins, B., Charnock, J.M., Livens, F.R., Pattrick, R.A.D., and Collison, D. (2000) An X-ray absorption spectroscopy study of the coprecipitation of Tc and Re with mackinawite (FeS). Applied Geochemistry, 15, 347354.CrossRefGoogle Scholar
Wogelius, R.A. and Vaughan, D.J. (2000) Analytical, experimental and computational methods in environmental mineralogy. Pp. 787 in: Environmental Mineralogy (Vaughan, D.J. and Wogelius, R.A., editors). EMU Notes in Mineralogy, 2. Eötvös University Press, Budapest.Google Scholar
Wogelius, R.A. and Walther, J.V. (1991) Olivine dissolution at 25°C: effects of pH, carbon dioxide and organic acids. Geochimica et Cosmochimica Acta, 55, 943954.CrossRefGoogle Scholar
Wolery, T.J. (1983) EQ3/NR, a computer program for geochemical aqueous speciation-solubility calculations: user's guide and documentation UCRL–53414. Lawrence Livermore Laboratory, California.Google Scholar
Wright, K., Watson, G., Parker, S. and Vaughan, D.J. (1998) Simulation of the structure and stability of sphalerite (ZnS) surfaces. American Mineralogist, 83, 141146.CrossRefGoogle Scholar
Wright, K.V., Hillier, I., Vaughan, D.J. and Vincent, M.A. (1999) Cluster models of the dissociation of water on the surface of galena (PbS). Chemical Physics Letters, 299, 527531.CrossRefGoogle Scholar
Yin, Q., Kelsall, G., Vaughan, D.J. and England, K. (1995) Atmospheric and electrochemical oxidation of the surface of chalcopyrite (CuFeS2). Geochimica et Cosmochimica Acta, 59, 10911100.CrossRefGoogle Scholar
Yin, Q., Kelsall, G.H., England, K. and Vaughan, D.J. (2000) Surface oxidation of chalcopyrite (CuFeS2) in alkaline solutions. Journal of the Electrochemical Society, 147, 29452951.CrossRefGoogle Scholar