Hostname: page-component-78c5997874-m6dg7 Total loading time: 0 Render date: 2024-11-03T01:55:16.822Z Has data issue: false hasContentIssue false
  • English
  • Français

Occurrences of the Indo-West Pacific rock oyster Saccostrea cucullata in mainland Japan

Published online by Cambridge University Press:  08 August 2014

Masami Hamaguchi ,
Hiromori Shimabukuro ,
Hironori Usuki  and
Masakazu Hori
Masami Hamaguchi*
Affiliation:
National Research Institute of Fisheries and Environment of Inland Sea, Fisheries Research Agency, 2-17-5 Maruishi, Hatsukaichi, Hiroshima 739-0452, Japan
Hiromori Shimabukuro
Affiliation:
National Research Institute of Fisheries and Environment of Inland Sea, Fisheries Research Agency, 2-17-5 Maruishi, Hatsukaichi, Hiroshima 739-0452, Japan
Hironori Usuki
Affiliation:
National Research Institute of Aquaculture, Fisheries Research Agency, Tsuiura, Saeki, Oita 879-2602, Japan
Masakazu Hori
Affiliation:
National Research Institute of Fisheries and Environment of Inland Sea, Fisheries Research Agency, 2-17-5 Maruishi, Hatsukaichi, Hiroshima 739-0452, Japan
*
Correspondence should be addressed to: M. Hamaguchi, National Research Institute of Fisheries and Environment of Inland Sea, Fisheries Research Agency, 2-17-5 Maruishi, Hatsukaichi, Hiroshima 739-0452, Japan email: [email protected]
Get access

Abstract

We surveyed 110 Saccostrea oysters sampled from southern Kagoshima Bay and Wakayama Prefecture to monitor the species diversity of marine benthos using morphological features and DNA barcoding. Prior to the survey, we re-identified 55 Saccostrea oysters sampled from the Yaeyama Islands, a hot spot for Saccostrea species in Japan. Analysis of partial nucleotide sequences from the mitochondrial large subunit of ribosomal DNA (LSrDNA) led to the discovery of the Indo-West Pacific rock oyster S. cucullata-F in Kagoshima Bay, and S. cucullata-C and S. cucullata-F in Wakayama Prefecture. This is the first record of the Indo-West Pacific rock oyster in mainland Japan (Hokkaido, Honshu, Shikoku and Kyushu Islands). We postulate that there may have been a northward shift in the distribution patterns of the species due to global warming, these Pacific rock oysters are relic species from the Middle or Late Pleistocene, or the non-indigenous species were introduced by oil tanker or other industrial activities.

Keywords

Saccostrea cucullataDNA barcodingnucleotide sequenceYaeyama Islandsmainland Japan
Type
Research Article
Information
Marine Biodiversity Records , Volume 7 , 2014 , e84
Copyright
Copyright © Marine Biological Association of the United Kingdom 2014 

Access options

Get access to the full version of this content by using one of the access options below. (Log in options will check for institutional or personal access. Content may require purchase if you do not have access.)

References

REFERENCES

Aranishi, F. and Iidzuka, Y. (2007) Occurrence of tropical oyster Saccostrea echinata along the southeastern coast of Kyushu. Shizenfukugenkenkyu 3, 21–25. [In Japanese.]Google Scholar
Banks, M.A., Waters, C. and Hedgecock, D. (1993) Discrimination between closely related Pacific oysters (Crassostrea) via mitochondrial DNA sequences coding for large subunit rRNA. Molecular Marine Biology and Biotechnology 2, 129–136.Google Scholar
Born, I. (1778) Index Rerum Naturalium Musei Caesarei Vindibonensis, par prima, Tesacea. Vienna: Ex Officina Krausiana, Vindobonae, 442 pp.Google Scholar
Boudry, P., Heurtebise, S. and Lapegue, S. (2003) Mitochondrial and nuclear DNA sequence variation of presumed Crassostrea gigas and Crassostrea angulata specimens: a new oyster species in Hong Kong? Aquaculture 228, 15–25.CrossRefGoogle Scholar
Buroker, N.E., Hershberger, W.K. and Chew, K.K. (1979) Population genetics of the family Ostreidae. II. Interspecific studies of the genera Crassostrea and Saccostrea . Marine Biology 54, 171–184.Google Scholar
Chen, J., Li, Q., Kong, L. and Yu, H. (2011) How DNA barcodes complement taxonomy and explore species diversity: the case study of a poorly understood marine fauna. PLoS ONE 6, e21326. doi: 10.137/journal.pone.0021326.CrossRefGoogle ScholarPubMed
Dinamani, P. (1976) The morphology of the larval shell of Saccostrea glomerata (Gould, 1850) and a comparative study of the larval shell in the genus Crassostrea Sacco, 1987 (Ostreidae). Veliger 28, 121–158.Google Scholar
Fukui, Y. and Wada, K. (1986) Distribution and reproduction of four intertidal crabs (Crustacea, Bachyura) in the Tonda River Estuary, Japan. Marine Ecology Progress Series 30, 229–241.Google Scholar
Hamaguchi, M., Shimabukuro, H., Kawane, M. and Hamaguchi, T. (2013) New record of Kumamoto oyster, Crassostrea sikamea, in Seto Inland Sea. Marine Biodiversity Records e16. doi: 10.1017/S1755267212001297.CrossRefGoogle Scholar
Hebert, P.D.N., Cywinska, A., Ball, S.I. and de Waard, J.R. (2003) Biological identifications through DNA barcodes. Proceedings of the National Academy of Sciences of the United States of America 270, 313–321.Google Scholar
Hedgecock, D., Banks, M.A. and McGoldrick, D.J. (1993) The status of the Kumamoto oyster Crassostrea sikamea (Amemiya 1928) in U.S. commercial brood stocks. Journal of Shellfish Research 12, 215–221.Google Scholar
Hedgecock, D., Li, G., Banks, M.A. and Kain, Z. (1999) Occurrence of the Kumamoto oyster Crassostrea sikamea in the Ariake Sea, Japan. Marine Biology 133, 65–68.Google Scholar
Hong, J.-S., Sekino, M. and Sato, S. (2012) Molecular species diagnosis confirmed the occurrence of Kumamoto oyster Crassostrea sikamea in Korean waters. Fisheries Science 78, 259–267.Google Scholar
Iijima, A. (ed.) (2007) The 7th National Survey on the Natural Environment: Shallow Sea Survey (Tidal Flats). Biodiversity Center of Japan, Nature Conservation Bureau, Ministry of the Environment. [In Japanese.]Google Scholar
Inaba, A. and Torigoe, K. (2004) Oysters in the world, Part 2: systematic description of the recent oyster. Nishinomiya, Hyogo, Japan: Bulletin of Nishinomiya Shell Museum, 3, Nishinomiya Shell Museum. [In Japanese.]Google Scholar
Kimura, M. (1980) A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution 16, 111–120.Google Scholar
Kihira, H., Matsuda, M. and Uchiyama, R. (2009) Freshwater and estuarine mollusks in Japan. Kanagawa, Japan: PISCES Publishers. [In Japanese.]Google Scholar
Lam, K. and Morton, B. (2003) Mitochondrial DNA and morphological identification of a new species of Crassostrea (Bivalvia: Ostreidae) cultured for centuries in the Pearl River Delta, Hong Kong, China. Aquaculture 228, 1–13.Google Scholar
Lam, K. and Morton, B. (2006) Morphological and mitochondrial-DNA analysis of the Indo-West Pacific rock oysters (Ostreidae: Saccostrea species). Journal of Molluscan Studies 72, 235–245.CrossRefGoogle Scholar
Lam, K. and Morton, B. (2009) Oysters (Bivalvia: Ostreidae and Gryphaeidae) recorded from Malaysia and Singapore. Raffles Bulletin of Zoology 2009, 57, 481–494.Google Scholar
Liu, J., Li, Q., Kong, L., Yu, H. and Zheng, X. (2011) Identifying the true oysters (Bivalvia: Ostreidae) with mitochondrial phylogeny and distance-based DNA barcoding. Molecular Ecology Resources 11, 820–830.Google Scholar
Nishimura, K., Kurozumi, T. and Kimura, J. (1998) Saccostrea species, newly recorded at Ogasawara Islands. Chiribotan 28, 85–88. [In Japanese.]Google Scholar
O'Foighil, D., Gaffney, P.M., Wilbur, A.E. and Hilbish, T.J. (1998) Mitochondrial cytochrome oxidase I gene sequences support an Asian origin for the Portuguese oyster Crassostrea angulata . Marine Biology 131, 497–503.CrossRefGoogle Scholar
Ohgaki, S. (1997) Record of an oyster, Saccostrea glomerata (Gould) from Tonda River estuary. Nankiseibutsu 39, 94. [In Japanese.]Google Scholar
Reece, K.S., Cordes, J.F., Stubbs, J.B., Hudson, K.I. and Francis, F.A. (2008) Molecular phylogenies help resolve taxonomic confusion with Asian Crassostrea oyster species. Marine Biology 153, 709–721.Google Scholar
Sekino, M., Sato, S., Hong, J.-S. and Li, Q. (2012) Contrasting pattern of mitochondrial population diversity between an estuarine bivalve, the Kumamoto oyster Crassostrea sikamea, and the closely related Pacific oyster C. gigas . Marine Biology. doi: 10.1007/s00227-012-2037-z.Google Scholar
Sekino, M. and Yamashita, H. (2013) Mitochondrial DNA barcoding for Okinawan oysters: a cryptic population of the Portuguese oyster Crassostrea angulata in Japanese waters. Fisheries Science 79, 61–76.Google Scholar
Shimabukuro, H., Arai, S., Terawaki, T. and Noro, T. (2006) On the record and distribution of Sargassum carpophyllum (Phaeophyceae, Fucales) from Japan. Japanese Journal of Phycology 54, 83–88. [In Japanese.]Google Scholar
Shimabukuro, H., Kawane, M. and Hamaguchi, M. (2012) New record of Sargassum denticarpum Ajisaka (Fucales, Phaeophyceae) from Iriomote Island (Ryukyu Archipelago, Japan). Botanica Marina 55, 209–215.Google Scholar
Tack, J.F., Berghe, E. and Polk, P.H. (1992) Ecomorphology of Crassostrea cucullata (Born, 1778) (Ostreidae) in a mangrove creek (Gazi, Kenya). Hydrobiologia 247, 109–117.Google Scholar
Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M. and Kumar, S. (2011) MEGA 5: molecular evolutionary genetic analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Molecular Biology and Evolution 28, 2731–2739.Google Scholar
Thompson, J.D., Higgins, D.G. and Gibson, T.J. (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research 22, 4673–4680.CrossRefGoogle ScholarPubMed
Torigoe, K. (1981) Oysters in Japan. Journal of Science—Hiroshima University Series B Division 29, 291–481.Google Scholar
Torigoe, K. and Inaba, A. (1981) On the scientific name of Japanese spiny oyster ‘kegaki’. Venus 40, 126–134.Google Scholar
Wang, H., Qian, L., Wang, A. and Guo, X. (2013) Occurrence and distribution of Crassostrea sikamea (Amemiya 1928) in China. Journal of Shellfish Research 32, 439–446.Google Scholar
Yasuda, N., Hamaguchi, M., Sasaki, M., Nagai, S., Saba, M. and Nadaoka, K. (2004) Complete mitochondrial genome sequences for Crown-of-thorns starfish Acanthaster planci and Acanthaster brevispinus . BMC Genomics 7, 17–23.CrossRefGoogle Scholar