Hostname: page-component-cd9895bd7-p9bg8 Total loading time: 0 Render date: 2024-12-18T10:59:28.347Z Has data issue: false hasContentIssue false
  • English
  • Français

Hypotrachyna neohorrescens, a new species in the subgenus Parmelinopsis (Parmeliaceae) from Brazil

Published online by Cambridge University Press:  31 March 2022

Andressa S. Rodrigues Open the ORCID record for Andressa S. Rodrigues [Opens in a new window] ,
Priscila C. da Costa Open the ORCID record for Priscila C. da Costa [Opens in a new window] ,
Aline P. Lorenz Open the ORCID record for Aline P. Lorenz [Opens in a new window]  and
Patrícia Jungbluth Open the ORCID record for Patrícia Jungbluth [Opens in a new window]
Andressa S. Rodrigues*
Affiliation:
Faculty of Pharmaceutical Sciences, Food and Nutrition, Universidade Federal de Mato Grosso do Sul, Av. Costa e Silva, s/n, 79070-900, Campo Grande, Brazil
Priscila C. da Costa
Affiliation:
Institute of Natural, Human and Social Sciences, Universidade Federal de Mato Grosso, Av. Alexandre Ferronato 1200, 78557-267, Sinop, Brazil
Aline P. Lorenz
Affiliation:
Institute of Biosciences, Universidade Federal de Mato Grosso do Sul, Av. Costa e Silva, s/n, 79070-900, Campo Grande, Brazil
Patrícia Jungbluth
Affiliation:
Department of Zootechnics and Biological Sciences, Universidade Federal de Santa Maria, Av. Independência 3751, 98300-000, Palmeira das Missões, Brazil
*
Author for correspondence: Andressa S. Rodrigues. E-mail: [email protected]
Get access Rights & Permissions [Opens in a new window]

Abstract

This study describes a new species of Hypotrachyna subgenus Parmelinopsis from the south-eastern Cerrado (Brazilian savannah), a biodiversity hotspot. The species is especially common in open vegetation, including urban environments. Hypotrachyna neohorrescens sp. nov. is morphologically and chemically similar to H. horrescens. Nevertheless, phylogenetic analyses of the nuITS and mtSSU regions revealed that H. neohorrescens is a distinct species and closely related to the North American H. mcmulliniana, differing by the size of the laciniae and ascospores.

Keywords

Cerradolichenized fungiphylogenytaxonomy
Type
Standard Paper
Information
The Lichenologist , Volume 54 , Issue 2 , March 2022 , pp. 107 - 115
Check for updates
Copyright
Copyright © The Author(s), 2022. Published by Cambridge University Press on behalf of the British Lichen Society

Access options

Get access to the full version of this content by using one of the access options below. (Log in options will check for institutional or personal access. Content may require purchase if you do not have access.)

References

Akaike, H (1974) A new look at the statistical model identification. IEEE Transactions on Automatic Control 19, 716–723.CrossRefGoogle Scholar
Altermann, S, Leavitt, SD, Goward, T, Nelsen, MP and Lumbsch, HT (2014) How do you solve a problem like Letharia? A new look at cryptic species in lichen-forming fungi using Bayesian clustering and SNPs from multilocus sequence data. PLoS ONE 9, e97556.CrossRefGoogle Scholar
Batalha, MA (2011) O Cerrado não é um bioma. Biota Neotropica 11, 21–24.CrossRefGoogle Scholar
Benatti, MN (2012) A worldwide key for the genus Parmelinopsis Elix & Hale (Parmeliaceae; Lichenized Ascomycetes). Opuscula Philolichenum 11, 304–312.Google Scholar
Canêz, L (2005) A família Parmeliaceae na localidade de Fazenda da Estrela, município de Vacaria, Rio Grande do Sul, Brasil. MSc. thesis, Instituto de Botânica (São Paulo).Google Scholar
Crespo, A and Lumbsch, HT (2010) Cryptic species in lichen-forming fungi. IMA fungus 1, 167–170.CrossRefGoogle ScholarPubMed
Cubas, P, Lumbsch, HT, Del Prado, R, Ferencova, Z, Hladun, NL, Victor, JR and Divakar, PK (2018) Historical biogeography of the lichenized fungal genus Hypotrachyna (Parmeliaceae, Ascomycota): insights into the evolutionary history of a pantropical clade. Lichenologist 50, 283–298.CrossRefGoogle Scholar
Darriba, D, Taboada, GL, Doallo, R and Posada, D (2012) jModelTest 2: more models, new heuristics and parallel computing. Nature Methods 9, 772.CrossRefGoogle ScholarPubMed
Del-Prado, R, Cubas, P, Lumbsch, HT, Divakar, PK, Blanco, O, Amo de Paz, G, Molina, MC and Crespo, A (2010) Genetic distances within and among species in monophyletic lineages of Parmeliaceae (Ascomycota) as a tool for taxon delimitation. Molecular Phylogenetics and Evolution 56, 125–133.CrossRefGoogle ScholarPubMed
Del-Prado, R, Buaruang, K, Lumbsch, HT, Crespo, A and Divakar, PK (2019) DNA sequence-based identification and barcoding of a morphologically highly plastic lichen forming fungal genus (Parmotrema, Parmeliaceae) from the tropics. Bryologist 122, 281–291.CrossRefGoogle Scholar
Divakar, PK, Crespo, A, Blanco, O and Lumbsch, HT (2006) Phylogenetic significance of morphological characters in the tropical Hypotrachyna clade of parmelioid lichens (Parmeliaceae, Ascomycota). Molecular Phylogenetics and Evolution 40, 448–458.CrossRefGoogle Scholar
Divakar, PK, Crespo, A, Núñez-Zapata, J, Flakus, A, Sipman, HJM, Elix, JA and Lumbsch, HT (2013) A molecular perspective on generic concepts in the Hypotrachyna clade (Parmeliaceae, Ascomycota). Phytotaxa 132, 21–38.CrossRefGoogle Scholar
Divakar, PK, Leavitt, SD, Molina, MC, Del-Prado, R, Lumbsch, HT and Crespo, A (2016) A DNA barcoding approach for identification of hidden diversity in Parmeliaceae (Ascomycota): Parmelia sensu stricto as a case study. Botanical Journal of the Linnean Society 180, 21–29.CrossRefGoogle Scholar
Döring, H, Clerc, P, Grube, M and Wedin, M (2000) Mycobiont-specific PCR primers for the amplification of nuclear ITS and LSU rDNA from lichenized ascomycetes. Lichenologist 32, 200–204.CrossRefGoogle Scholar
Elix, JA and Hale, M (1987) Canomaculina, Myelochroa, Parmelinella, Parmelinopsis, and Parmotremopsis, five new genera in the Parmeliaceae (lichenized Ascomycotina). Mycotaxon 29, 233–244.Google Scholar
Gardes, M and Bruns, TD (1993) ITS primers with enhanced specificity for basidiomycetes – application to the identification of mycorrhizae and rusts. Molecular Ecology 2, 113–118.CrossRefGoogle Scholar
Hale, ME (1971) Morden-Smithsonian expedition to Dominica: the lichens (Parmeliaceae). Smithsonian Contributions to Botany 4, 1–25.CrossRefGoogle Scholar
Hale, ME (1976) A monograph of the lichen genus Parmelina Hale (Parmeliaceae). Smithsonian Contributions to Botany 33, 1–60.Google Scholar
Jungbluth, P (2006) A família Parmeliaceae (fungos liquenizados) em fragmentos de cerrados do Estado de São Paulo. MSc. thesis, Instituto de Botânica (São Paulo).Google Scholar
Katoh, K and Standley, DM (2013) MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Molecular Biology and Evolution 30, 772–780.CrossRefGoogle ScholarPubMed
Kearse, M, Moir, R, Wilson, A, Stones-Havas, S, Cheung, M, Sturrock, S, Buxton, S, Cooper, A, Markowitz, S, Duran, C, et al. (2012) Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics 28, 1647–1649.CrossRefGoogle ScholarPubMed
Leavitt, SD, Esslinger, TL, Hansen, ES, Divakar, PK, Crespo, A, Loomis, BF and Lumbsch, HT (2014) DNA barcoding of brown Parmeliae (Parmeliaceae) species: a molecular approach for accurate specimen identification, emphasizing species in Greenland. Organisms Diversity and Evolution 14, 11–20.CrossRefGoogle Scholar
Leavitt, SD, Esslinger, TL, Divakar, PK, Crespo, A and Lumbsch, HT (2016) Hidden diversity before our eyes: delimiting and describing cryptic lichen-forming fungal species in camouflage lichens (Parmeliaceae, Ascomycota). Fungal Biology 120, 1374–1391.CrossRefGoogle Scholar
Lendemer, JC and Allen, JL (2015) Reassessment of Hypotrachyna virginica, an endangered, endemic Appalachian macrolichen, and the morphologically similar species with which it has been confused. Proceedings of the Academy of Natural Sciences of Philadelphia 164, 279–289.CrossRefGoogle Scholar
Lendemer, JC and Allen, JL (2020) A revision of Hypotrachyna subgenus Parmelinopsis (Parmeliaceae) in eastern North America. Bryologist 123, 265–332.CrossRefGoogle Scholar
Lücking, R, Hodkinson, BP and Leavitt, SD (2017) The 2016 classification of lichenized fungi in the Ascomycota and Basidiomycota – approaching one thousand genera. Bryologist 119, 361–416.CrossRefGoogle Scholar
Lutsak, T, Fernández-Mendoza, F, Kirika, P, Wondafrash, M and Printzen, C (2020) Coalescence-based species delimitation using genome-wide data reveals hidden diversity in a cosmopolitan group of lichens. Organisms Diversity and Evolution 20, 189–218.CrossRefGoogle Scholar
Marcelli, MP (1993) Pequenas Parmelia s. l. (Liquens: Ascomycotina) ciliadas dos cerrados brasileiros. Acta Botanica Brasilica 7, 25–70.Google Scholar
Marcelli, MP, Pereira, EC and Iacomini, M (1998) A bibliography on Brazilian lichenology. In Marcelli, MP and Seaward, MRD (eds), Lichenology in Latin America: History, Current Knowledge and Applications. São Paulo: CETESB, pp. 47–63.Google Scholar
Martins, SMDA, Käffer, MI and Lemos, A (2008) Liquens como bioindicadores da qualidade do ar numa área de termoelétrica, Rio Grande do Sul, Brasil. Hoehnea 35, 425–433.CrossRefGoogle Scholar
Oliveira, U, Soares-Filho, B, Souza Costa, WL, Gomes, L, Bustamante, M and Miranda, H (2021) Modeling fuel loads dynamics and fire spread probability in the Brazilian Cerrado. Forest Ecology and Management 482, 118889.CrossRefGoogle Scholar
Orange, A, James, PW and White, FJ (2010) Microchemical Methods for the Identification of Lichens. London: British Lichen Society.Google Scholar
Rambaut, A, Drummond, AJ, Xie, D, Baele, G and Suchard, MA (2018) Posterior summarization in Bayesian phylogenetics using Tracer 1.7. Systematic Biology 67, 901–904.CrossRefGoogle ScholarPubMed
Ronquist, F, Teslenko, M, van der Mark, P, Ayres, DL, Darling, A, Höhna, S, Larget, B, Liu, L, Suchard, MA and Huelsenbeck, JP (2012) MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Systematic Biology 61, 539–542.CrossRefGoogle ScholarPubMed
Schoch, CL, Seifert, KA, Huhndorf, S, Robert, V, Spouge, JL, Levesque, CA, Chen, W and Fungal Barcoding Consortium (2012) Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi. Proceedings of the National Academy of Sciences of the United States of America 109, 6241–6246.CrossRefGoogle ScholarPubMed
Singh, G, Dal Grande, F, Divakar, PK, Otte, J, Leavitt, SD, Szczepanska, K, Crespo, A, Rico, VJ, Aptroot, A, Cáceres, M, et al. (2015) Coalescent-based species delimitation approach uncovers high cryptic diversity in the cosmopolitan lichen-forming fungal genus Protoparmelia (Lecanorales, Ascomycota). PLoS ONE 10, e0124625.Google Scholar
Sipman, HJM, Elix, JA and Nash, TH III (2009) Hypotrachyna (Parmeliaceae, lichenized fungi). Flora Neotropica Monograph 104, 1–176.Google Scholar
Stamatakis, A (2014) RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics 30, 1312–1313.CrossRefGoogle ScholarPubMed
Strassburg, BB, Brooks, T, Feltran-Barbieri, R, Iribarrem, A, Crouzeilles, R, Loyola, R, Latawiec, AE, Oliveira Filho, FJB, Scaramuzza, C, Scarano, F, et al. (2017) Moment of truth for the Cerrado hotspot. Nature Ecology and Evolution 1, 1–3.CrossRefGoogle ScholarPubMed
Swofford, DL and Sullivan, J (2003) Phylogeny inference based on parsimony and other methods using PAUP*. In Salemi, M and Vandamme, AM (eds), The Phylogenetic Handbook: a Practical Approach to DNA and Protein Phylogeny. Cambridge: Cambridge University Press, pp. 160–206.Google Scholar
Talavera, G and Castresana, J (2007) Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments. Systematic Biology 56, 564–577.CrossRefGoogle ScholarPubMed
Vilgalys, R and Hester, M (1990) Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. Journal of Bacteriology 172, 4238–4246.CrossRefGoogle ScholarPubMed
White, TJ, Bruns, T, Lee, S and Taylor, JW (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In Innis, MA, Gelfand, DH, Sninsky, JJ and White, TJ (eds), PCR Protocols: a Guide to Methods and Applications. New York: Academic Press, pp. 315–322.Google Scholar
Zoller, S, Scheidegger, C and Sperisen, C (1999) PCR primers for the amplification of mitochondrial small subunit ribosomal DNA of lichen-forming ascomycetes. Lichenologist 31, 511–516.CrossRefGoogle Scholar
Supplementary material: PDF

Rodrigues et al.

Supplementary Material

Download Rodrigues et al.(PDF)
PDF 323.1 MB