Self-Organizing Maps (SOM) have been used for patterning and visualizing ten environmental parameters and phytoplankton biomass in a mactrotidal (>10 m) Gyeonggi Bay and artificial Shihwa Lake during 1986–2004. SOM segregated study areas into four groups and ten subgroups. Two strikingly alternative states are frequently observed: the first is a diverse non-eutrophic state designated by three groups (SOM 1–3), and the second is a eutrophic state (SOM 4: Shihwa Lake and Upper Gyeonggi Bay; summer season) characterized by enhanced nutrients (3 mg l−1 dissolved inorganic nitrogen, 0.1 mg l−1 PO4) that act as a signal and response to that signal as algal blooms (24 µg chlorophyll-a l−1). Bloom potential in response to nitrification is affiliated with high temperature (r = 0.26), low salinity (r = −0.40) and suspended solids (r = –0.27). Moreover, strong stratification in the Shihwa Lake has accelerated harmful algal blooms and hypoxia. The non-eutrophic states (SOM 1–3) are characterized by macro-tidal estuaries exhibiting a tolerance to pollution with nitrogen-containing nutrients and retarding any tendency toward stratification. SOM 1 (winter) is more distinct from SOM 4 due to higher suspended solids (>50 mg l−1) caused by resuspension that induces light limitation and low chlorophyll-a (<5 µg l−1). In addition, eutrophication-induced shifts in phytoplankton communities are noticed during all the seasons in Gyeonggi Bay. Overall, SOM showed high performance for visualization and abstraction of ecological data and could serve as an efficient ecological map that can specify blooming regions and provide a comprehensive view on the eutrophication process in a macrotidal estuary.

To analyse temporal distributions of microplankton populations and relationships to environmental conditions in marine ecosystems, a dataset of microplankton communities was investigated using a range of statistical methods. A total of 164 microplankton species comprising 100 microalgae and 64 ciliates were identified from 120 samples, respectively. Both planktonic microalga and ciliate assemblages showed temporal patterns and were significantly correlated between their temporal variations in abundance. The microplankton communities were characterized by 14 ciliates (e.g. Strombidium sulcatum, Tintinnopsis tubulosoides and Strombidium cheshiri) and 18 microalgae (e.g. Skeletonema costatum and Alexandrium tamarense). Multiple regression analyses showed that the interspecies correlations among these dominant species represented a complex network with a clear seasonal shift. Temporal pattern of microplankton communities was significantly correlated with the environmental variables such as temperature, salinity and nitrate nitrogen. The results suggest the clear species distribution and temporal dynamics of microplankton communities in response to environmental changes, and multivariate statistical approaches were a useful tool to reveal the species distribution patterns and complex microplanktonic interspecies correlations in marine ecosystems.

This study monitors the spatial and temporal variability of sea ambient noise (SAN) in the Cres-Lošinj archipelago from 2007 to 2009 (north-eastern Adriatic Sea, Croatia). The archipelago is an important marine habitat for many protected species, including the bottlenose dolphin (Tursiops truncatus) that is considered as vulnerable to disturbance from intense local vessel traffic. Systematic monthly sampling of SAN was carried out at ten predefined acoustic stations. Data on the presence, type and distance of vessels from these stations was also collected during sampling and vessels were allocated into four main classes. A sample of noise produced by a representative vessel of each vessel class was collected and the noise levels were extracted on the 1/3 octave band standard centre frequencies. All the recordings were analysed in terms of instantaneous sound pressure level (LLSP, L-weighted, 63 Hz–20 kHz, root mean square fast). The equivalent continuous sound pressure levels (LLeq) for vessel and SAN were calculated averaging the LLSP of vessel and SAN samples. Results indicate an increase of SAN levels particularly in the range of low frequencies (63 Hz–1 kHz) during the tourist season. A positive relationship was found between the spatial and temporal distribution of SAN and seasonal changes in anthropogenic pressure, in terms of vessel traffic. Potential implications for local marine life, with particular reference to bottlenose dolphins, are discussed.

Although taxonomic sufficiency (TS) was developed for rapid environmental assessments, it has recently been adopted to study the spatial patterns of macrobenthos in relation to natural environmental gradients. To accept TS as a routine approach in wider benthic studies, it needs to be valid for various taxa and geographically different water masses. This study examined the effects of taxonomic resolution on depth-related multivariate patterns of macrobenthic polychaetes on the western Indian continental shelf. An extensive data set based on samples collected from a wide geographical area (7°–22°N latitudes) covering a large depth gradient (30–200 m) has been analysed. Species level polychaete community data had shown a significant variation between shallow and deeper waters. Our results indicated that generic and family level data also can detect community shifts along a depth gradient in a similar way to species level data. The entire western continental margin (200 m depth) is lying in the oxygen minimum zone (dissolved oxygen <0.5 ml l−1). This study indicated that family level results were sufficient to document the correlations of low oxygen on macrobenthic polychaetes. This study also tested the effects of transformations on depth-related patterns of polychaetes. In multivariate analyses, transformations play a role in defining the balance between contributions from common and rare species in the measure of similarity of two samples. Our results showed that the type of transformations did not make any prominent differences in the multivariate analyses.

The annual variations in body-size spectra of planktonic ciliate communities and their relationships to environmental conditions were studied based on a 12-month dataset (June 2007 to May 2008) from Jiaozhou Bay on the Yellow Sea coast of northern China. Based on the dataset, the body sizes of the ciliates, expressed as equivalent spherical diameters, included five ranks: S1 (5–35 μm); S2 (35–55 μm); S3 (55–75 μm); S4 (75–100 μm); and S5 (100–350 μm). These body-size ranks showed a clear temporal succession of dominance in the order of S2 (January–April) → S1 (May–July) → S4 (August–September) → S3 (October–December). Multivariate analyses showed that the temporal variations in their body-size patterns were significantly correlated with changes in environmental conditions, especially water temperature, salinity, dissolved oxygen concentration (DO) and nutrients. In terms of abundance, rank S2 was significantly correlated with water temperature, DO and nutrients, whereas ranks S4 and S5 were correlated with the salinity and nutrients respectively (P < 0.05). These results suggest that the body-size patterns of planktonic ciliate communities showed a clear temporal pattern during an annual cycle and significantly associated with environmental conditions in marine ecosystems.

Colonization dynamics of periphytic ciliate communities were studied in coastal waters of the Yellow Sea, northern China from May to June 2010, using an artificial substratum. Samples were collected at two depths of 1 and 3 m. The temporal patterns of ciliate colonization had similar dynamics and were fitted to the MacArthur–Wilson and logistic models in colonization and growth curves at both depths, respectively. The ciliate communities reached equilibrium in species composition within at least 10-days exposure time. However, they differed in both structural and functional parameters between the two layers, despite similar species composition. The species diversity, evenness, the colonization rate (G) and maximum abundance (Amax) were distinctly higher, but the time for reaching 90% equilibrium species number (T90%) was shorter at the depth of 1 m than those at a deeper layer. Results suggest that it is an optimal strategy to collect the ciliate communities within shorter exposure time at 1 m for ecological research and a monitoring programme in marine ecosystems.

Marine sessile invertebrates with outer skeleton constitute additional substrate for a diverse group of epibiotic organisms. Colonial hydroids are no exception. Large numbers of motile and sessile organisms use hydroid colonies covered with chitinous perisarc for permanent or temporal attachment. Such epibiotic associations between colonial hydroids and microorganisms are poorly studied and mostly known for subtropical regions. There are no data about the development of such epibiotic association and type of its specificity yet. The present paper for the first time describes the epibiotic association of the colonial thecate hydroid Dynamena pumila from the high latitude sea. We reconstruct the spatial and temporal development of such epibiotic community and analyse the organization of the multicomponent biofilm covering the hydroid colony. Comparison of the epibiotic community in different seasons indicates for holding out of the basal features and components of the community during the whole year. Ultrastructural investigations revealed that components of the biofilm affect the outer skeleton of the hydroid colony that results in penetration of the microorganisms into the skeleton and even soft tissues. Our data allow supposing that association of hydroid D. pumila with a microorganism community has features of a symbiotic system.

This contribution reports the first record of intertidal reefs built by the sabellariid worm Sabellaria nanella in the lower intertidal at Monte Hermoso beach, Argentina (39°S). All previous records of S. nanella in the study area correspond to solitary individuals from shallow subtidal depths in coastal environments, while the present findings refer to well established reefs on stony rocks. Worms sort medium size sand grains to build the reefs, which contain higher amount of organic matter than the surrounding sediments. Size structure of worms shows multiple size cohorts that include recent recruits and mature adults. Many invertebrates, i.e. various annelids, arthropods, molluscs, nemerteans and nematodes, are the frequent organisms living within the reef, some of them already recorded in the area. The presence of intertidal reefs of S. nanella indicates that the species has plasticity to adapt to environments with different physical conditions (subtidal–intertidal areas).

Ecological interactions involving introduced seaweeds constitute an important research gap, since they could alter the trophic dynamics of native populations, but indirect effects on trophic levels are poorly known. The seaweed Caulerpa racemosa is one of the most notable invaders in the Mediterranean Sea. It is well known that C. racemosa modifies the amphipod community with respect to native habitats, but nothing is known regarding the common use of the same trophic resources. Therefore, the aim of this study was to assess if the feeding habits of amphipods associated with algal habitats are affected by the spread of the invasive C. racemosa, through stomach content analysis of amphipods living in both native and invaded seaweed assemblages. A total of 240 specimens of 14 species of amphipods were examined. Ten species were present in both studied habitats (native and invaded), while two were exclusive to native and invaded habitats, respectively. Ten individuals of each species at each habitat were selected and their gut contents were examined. A total of 11 different items was found in the gut contents: detritus; vegetal detritus; algae; animal tissue; Oligochaeta; Polychaeta; Foraminifera; Crustacea; Sipuncula; diatoms; and non-identified items. The expansion of C. racemosa into the native algal community changes the feeding habits of herbivorous amphipods, since their preferred food (epiphytic algae) is not available in the new habitat produced by C. racemosa. This community change occurs because of the presence of caulerpenyne in C. racemosa, which retards the growth of epiphytic algae. Nevertheless, other species are not affected or benefited by the invasion, such as detritivorous species whose main food source and habitat remains available. Altogether, slight changes in the trophodynamism of amphipod assemblages have been detected, which are not seen as relevant in an initial stage. However, they might be promoting some indirect effects in the energetic budget of populations, which may affect the life history. Further studies on food-web interactions in the ecosystems affected by invasive species are necessary.

The assemblage structure of harpacticoid copepods inhabiting the soft sediments of littoral and sublittoral areas of Cat Ba archipelago (South China Sea) is analysed. Three basic types of harpacticoid taxocenes were observed in the upper sublittoral. Main dominant species of taxocenes were Amphiascoides sp., Stenhelia latioperculata, Paramphiascella sp., Phyllopodopsyllus sp., Tisbe sp.1 and Amphiascoides sp. In addition, the main characteristics of harpacticoid species composition in littoral rock pools are described. A comparative analysis of shallow-water harpacticoid communities from different biotopes of the tropical region is presented, and shows that harpacticoid diversity and abundance are lowest in muddy sediments. Highest diversity and abundance are found in washed sands and silty sands with detritus. In general, the structure of muddy bottom communities is the most homogeneous throughout the tropics. Mangrove forests have no significant influence on harpacticoid taxocene structure. Harpacticoid associations of washed sands and silty sands with detritus demonstrate greater diversity and are region-specific.

Acrothoracican barnacles of the genus Trypetesa are obligate symbionts of hermit crabs that burrow into the gastropod shells occupied by their hosts. In the present study, hermit crabs were examined for the presence of trypetesids, based on collections from the United States, Jamaica, and the Philippines made between 1997 and 2008. Shells from Jamaica and New York contained Trypetesa lateralis, a trypetesid previously documented from central California. Trypetesa lateralis is redescribed based on light and scanning electron microscopy, showing the presence of an external mantle flap and asymmetrical opercular bars diagnostic for this species. The mean prevalence of trypetesids in Jamaica was 8.3% and most barnacles were associated with Calcinus tibicen; in New York the barnacles were found in 1.6% of shells occupied by Pagurus longicarpus. Specimens from the Philippines were identified as Trypetesa spinulosa (formerly known only from Madagascar) based on the presence of their diagnostic orificial palps. The mean prevalence of T. spinulosa in the Philippines was 3.7% and most barnacles were associated with Calcinus spp. Hermit crab eggs were observed in the guts of T. lateralis from Jamaica and T. spinulosa from the Philippines. In both of these regions the trypetesids were found significantly more often in shells occupied by female hermit crab hosts (80–87% with females). These findings suggest the barnacles be classified as transient parasites. The biology of trypetesids is reviewed and a key to the family is provided. Further studies are needed to determine if egg predation occurs in all trypetesids and the impacts on hosts.

The species range of Calanus sinicus along the Chinese coast extends from the Bohai Sea and the Yellow Sea in the north to the northern part of the South China Sea in the south. The subtropical seas along the southern coast of China mark the southern edge of the range of C. sinicus. In coastal seas off eastern Hong Kong, C. sinicus appears first in December, but densities comparable to those in the Yellow Sea and the East China Sea are reached only in January and February when temperature is <15°C. Density decreases in March as temperature increases. No individuals remain after May when temperature is >25°C. The average prosome length of females collected in February is comparable to that of females from the Yellow Sea, but females collected after mid-March are smaller than the smallest females from the Yellow Sea. Reproduction occurred mainly between January and March. Rapid decline of the population in April and the absence of a summer population suggest that the local population is derived from individuals advected from the north by ocean currents. Eggs produced locally probably did not hatch or develop into adults.

A checklist of published records of coronuloid barnacles (Cirripedia: Thoracica: Coronuloidea) attached to marine vertebrates is presented, with 44 species (including 15 fossil species) belonging to 14 genera (including 3 fossil genera) and 3 families recorded. Also included is information on their geographical distribution and the hosts with which they occur.

Barnacles of the superfamily Coronuloidea are obligate commensals of motile marine animals (Newman & Ross, 1976). Excepting the coronuloid genus Chelonibia Leach, the species included in this superfamily occur strictly upon marine vertebrates, particularly sea turtles and whales (Frick et al., 2011). Chelonophilic (turtle-associated) and cetophilic (whale-associated) coronuloids produce highly-ornamented shells with elaborations that enable these barnacles to grasp the skin of the host (Frick et al., 2010a). These same ornamentations are also useful characters for elucidating taxonomic affinities within the Coronuloidea (Darwin, 1854; Pilsbry, 1916; Ross & Frick, 2007).

The duration of brood development in the introduced crab, Hemigrapsus takanoi in the Oosterschelde, The Netherlands, was compared at three different water temperatures. At 12, 18 and 24°C the females took an average of 32, 11 and 8 days respectively to lay eggs, which took 86, 28 and 18 days respectively to complete development. Five stages of development were identified, with each brood stage comprising a similar proportion of the duration time at different temperatures. The duration of each brood stage was also somewhat proportional to the number of females found carrying each brood stage in the field at the beginning of the breeding season. There appears to be a trigger for the breeding season in H. takanoi in the field at around 15°C above which ovary development begins. The results suggest that an increase in water temperature as a result of climate change may result in an increased net reproductive rate in H. takanoi due to earlier onset of the breeding season and increased number of broods per inter-moult period resulting in population growth. Increased temperatures may therefore lead to increased invasiveness of H. takanoi where it is already present, and range extension into locations where its establishment is currently excluded by unsuitable temperature.

Polyplacophoran molluscs (chitons) are phylogenetically ancient and morphologically constrained, yet multiple living species are often found co-occurring within widely overlapping ecological niches. This study used two sets of experiments to compare interspecific variation among co-occurring species in the North Atlantic (Ireland) and separately in the North Pacific (British Columbia, Canada) chiton faunas. A complementary review of historical literature on polyplacophoran physiology provides an overview of the high level of metabolic variability in this group of ‘living fossils’. Species examined in de novo experiments showed significant variation in oxygen consumption both under air-saturated water conditions (normoxia), and in response to decreasing oxygen availability (hypoxia). Some species demonstrate an ability to maintain constant oxygen uptake rates despite hypoxia (oxyregulators), while others oxyconform, with uptake rate dependent on ambient oxygen tension. These organisms are often amalgamated in studies of benthic communities, yet show obvious physiological difference that may impact their response or tolerance to environmental change.

Many sacoglossan sea slugs utilize chloroplasts ingested from food algae for photosynthesis (functional kleptoplasty), and the extent and duration of kleptoplast retention differs greatly among sacoglossan species. Although most recent studies focus on the genetic, microscopic, or physiological mechanisms responsible for this unique phenomenon, its effects on the life history traits of sacoglossans have not been fully explored. To study the effects of light conditions on survival and weight retention, adult individuals of two sacoglossan species, Elysia trisinuata and Plakobranchus ocellatus (‘black type'), were reared under light conditions (a 14-hour light: 10-hour dark photoperiod with an irradiance level of 28 µmol m−2s−1) or complete darkness for 21 days. There was no significant difference in the survival rate between the light and dark treatments for E. trisinuata, and its wet weight relative to the initial weight was smaller in the light than in the dark. However, both the survival and relative weights were greater in the light than dark for P. ocellatus. Based on the fluorescent yield measurement using pulse-amplitude-modulated fluorometry, the retention duration of functional chloroplasts was longer (>17 days) for P. ocellatus than E. trisinuata (<4 days). These results indicate that P. ocellatus benefits from photosynthesis for survival and growth, whereas E. trisinuata does not under starved conditions. This interspecific difference is likely related to the period of functional chloroplast retention.

This study aimed to examine the responses of RNA/DNA ratio in Perna viridis under different nutritional status via both field and laboratory studies, and hence evaluate the usefulness of this ratio as a rapid growth biomarker in the mussels. First, the effects of size (small: 30–40 mm; medium: 40–50 mm; large: >50 mm) and tissue type (adductor muscle, foot, gill and hepatopancreas) on the RNA/DNA ratio were investigated in P. viridis collected from three different sites with different degrees of eutrophication in Hong Kong waters. Across all sizes, the mussels collected from a fairly ‘eutrophic’ mariculture zone had significantly higher RNA/DNA ratios in their gills than those from the other two relatively clean sites. The RNA/DNA ratio in small mussels was generally higher than in medium and large individuals, though such a size effect significantly interacted with tissue type and site. Second, we conducted a 10-day comparative laboratory study to elucidate the influence of starvation and feeding on the RNA/DNA ratio in the mussels. We observed that both hepatopancreas and foot muscle generally exhibited significant and rapid response to such a short-term starvation or food addition. The present results confirmed that the RNA/DNA ratio in P. viridis is a sensitive biomarker to gauge their growth and general health condition in accordance with food availability and/or eutrophication condition.

A systematic review of the parasites, pathogens and commensals of the edible cockle (Cerastoderma edule) and of the lagoon cockle (Cerastoderma glaucum) has been completed. A total of 59 different conditions have been reported throughout the range of both of these hosts; of these 50 have been reported in edible cockles, and 28 in lagoon cockles. Cockles are hosts to viruses, bacteria, fungi (including Microsporidia), Apicomplexa, Amoeba, Ciliophora, Perkinsozoa, Haplosporidia, Cercozoa, Turbellaria, Digenea, Cestoda, Nematoda, Crustacea and Nemertea. A number of these have been reported sporadically although they may be associated with mortalities. In particular, mortalities have been associated predominately with digeneans and some protistan infections. In many cases pathology is marked in affected animals and parasites have been shown to reduce fecundity, alter burrowing behaviour and limit growth. This review provides information on the individual and population effects of these conditions as well as providing suggestions for future research. In particular, there has been a lack of taxonomic rigour applied to many studies and as a result there are a number of erroneous host records. There is a need to re-describe a number of parasite species and to determine the life cycle of those considered to be important mortality drivers.

Here we report novel data on the ecology and diversity of West African estuarine biological communities, with emphasis on the opisthobranch gastropod, Haminoea orbignyana. Macrofaunal samples were obtained from five intertidal flats within Bodo Creek in the lower Niger Delta during two years (May 2006–April 2008) to investigate diversity and community assemblages of epimacrofauna. A total of 601 individuals belonging to 18 species were recorded, with density varying between 4 ind.m−2 and 660 ind.m−2. Gastropods (predominantly Pachymelania aurita and H. orbignyana) accounted for 92.3% of the community abundance, followed by malacostraca crustaceans (7.7%). Diversity varied (P < 0.05) between locations, with the mangrove swamp station having higher richness, diversity and evenness values than the open intertidal flat locations. The species H. orbignyana was only found on downstream sampling sites reaching a maximum density of 52 ind.m−2. The species seems to recruit during November/December and likely attains a maximum life span of about 18 months.