A century or so after the cessation of almost all mining in Cornwall, certain estuaries still have extremely high sediment concentrations of toxic trace metals, particularly copper and arsenic, but also lead and zinc. These high trace metal loadings in the sediments are to a large degree bioavailable to the local infauna, especially sediment-ingesting invertebrates. Some sediment trace metal bioavailabilities are so high as to be of ecotoxicological concern, with deleterious effects on the local biota at levels of biological organization up to and including changed community structure. The estuaries of interest here are those of the Rivers Carnon (Restronguet Creek), Tamar (and Tavy), Gannel, West Looe and Hayle. These estuaries are especially attractive field sites for comparative trace metal ecophysiology and ecotoxicology research for they lack the confounding presence of other anthropogenic contaminants inevitably present in most estuaries in the developed world. The estuaries also offer a range of combinations of different trace metals and a comparative gradient of sediment bioavailabilities of these trace metals.

The present study investigated the effects of a fish weir, a fixed trap used by artisanal fisheries, on the intertidal macrobenthic infauna of a macrotidal sandy beach on the Amazon coast. Biological and sediment samples were collected from within the weir and at five points of increasing distance (10 cm, 50 cm, 1 m, 2 m, 5 m and 50 m) from the external portion of the trap. The sediments from the weir and at 10 cm were dominated by mud, with a gradual decline in fine grains, water content and organic matter with increasing distance from the weir to 50 m (control). Taxon abundance and richness were significantly higher in the weir and at 10 cm than at the other sampling points. There was a trend of decreasing density and richness of the infauna from the weir to 1 m (which was a point of transition between the muddy and sandy sediments), after which the biological descriptors tended to increase once again. A shift was also observed in the dominant trophic groups, with a decrease in the abundance of the deposit feeders with increasing distance from the weir. By contrast, predators were more abundant at the points further from the weir. Our results indicate that fish weirs alter the associated sedimentary habitats, due to the increased protection from the action of waves and currents, with a micro-scale (from a few centimetres to 1–2 m) influence on the local macrofauna.

The family Syllidae, aside from representing the most species-rich family in Annelida, is characterized by a number of sexual and asexual reproductive strategies. With the exception of a few viviparous species, the subfamily Syllinae is characterized by schizogamous reproduction with pelagic larval stages and without parental care. Laboratory rearing of ripe specimens of Syllis rosea showed a different reproductive strategy, hitherto unknown in this subfamily. While male stolons rapidly degenerated after fertilization, female ones released large eggs in a gelatinous cluster attached to the middle-posterior chaetigers. The gel mass progressively compacted as a cocoon wrapped by the stolon body; 7 days after the deposition the larvae hatched out from the cocoon at the metatrochophore stage and the female stolon died after a few days. After hatching the larvae remained associated to the stolon, and young specimens of S. rosea survived up to the 3-chaetiger stage. Until now cocoon brooding by the stolon has only been reported for some Autolytinae. The production of gelatinous egg masses and parental care are known in basally branching clades within Syllidae, suggesting that this reproduction mode might retain some ancestral features. The scarce knowledge about reproductive cycles in Syllinae does not allow clarification whether this strategy is unique for S. rosea, or it occurs in other congeneric species. Further research is needed to understand possible relationships between sexual reproduction and phylogeny, stolon morphology and its adaptation to parental care, and ultimately between reproductive strategies and ecology.

Previous scientific studies have listed chemical compounds from sea cucumber species. The ability to produce bioactive metabolites derives from their response to various ecological stresses and avoidance of predation. In view of this, the present work aimed to evaluate the antibacterial activity and quantitatively assess the active components of different organs of the sea cucumber Holothuria foskali collected from the north-east of Tunisia. The antibacterial activity of ethyl acetate extracts was tested against Bacillus subtilis, Bacillus cereus, Escherichia coli and Pseudomonas aeruginosa. It was revealed that Escherichia coli and Bacillus subtilis were inhibited by the sea cucumber extracts. To identify the composition of these extracts, Gas Chromatography-Mass Spectroscopy (GC-MS) and Liquid Chromatography-Mass Spectroscopy (LC-MS) methods were used. The GC-MS revealed the presence of 25 major components, the most concentrated ones were characterized as C26H27N5O6 Morphinan-4,5-epoxy-3,6-diol, 6 amino;C17H31F3O2 3-trifluoroacetoxypentadecane; C31H50O2 Stigmasta-5,22-dien-3-ol,acetate; C11H14O2 1-Phthalanol,1,3,3-trimethyl 1-phenyl; C30H48O2 Ergosta-5,22-dien-3-ol,acetate and C25H40O2 (9E)-8-Phenyl-9-octadecenoic acid methyl ester; while the LC-MS revealed the presence of eight molecules, identified as phenolic acid, phytosterol and fat-soluble vitamins. Some molecules are interesting and deserve to be explored for their potential uses as ingredients in functional foods or as raw materials for new drug forms.

The nocturnal displacement to the water column of species hiding in the substrate during the day (so-called demersal migration) is a widespread phenomenon in coastal habitats. However, despite the relevance of these migrations to coastal ecosystem functioning, most of their ecological aspects are poorly understood. We aim to characterize spatial distribution patterns of demersal amphipods by comparing samples collected by light traps deployed both at rocky and nearby sandy areas. Dispersal abilities of such species were explored by considering two spatial scales of separation between rocky and sandy substrates: (1) <100 m and (2) >1 km. A total of >45,000 amphipod specimens were collected in the water column during the whole study, belonging to 50 species. The numerically dominant species were Guernea coalita, Bathyporeia cf. elegans, Perioculodes longimanus and Nototropis swammerdamei. The present study highlights the relevance of substrate type and study location on coastal demersal amphipod migrations. Amphipod assemblages were significantly different in the water column above rocky and sandy bottoms, even at a small spatial scale. Species emerging from rocky bottoms tend to remain in the proximity of this habitat; they showed lower abundances in sandy areas located nearby and almost none of them reached distant sandy areas. In contrast, migrant species commonly found on sediment during the day were collected at higher abundances in light traps deployed above rocky bottoms. Although several factors (e.g. food availability, predation pressure) are proposed to explain these patterns, the purpose of this horizontal migration remains unknown.

Ocean warming and acidification are expected to influence the biology of the ecologically and economically important red king crab, Paralithodes camtschaticus. We investigated transcriptome responses of adult, larval and juvenile red king crab to assess sensitivity to reduced pH and elevated temperature. In adults, gill tissue (but not heart or cuticle) responded to reduced pH by differentially regulating many genes involved in metabolic, membrane and cuticular processes, but not ionic or acid/base regulation. In larval crabs, we found little evidence for a strong transcriptomic response to pH, but did observe large differences in the transcriptomes of newly hatched and one-week old larvae. In juvenile crabs, we found that there was a strong transcriptomic response to temperature across all pH conditions, but that only extreme low pH caused transcriptomic shifts. Most of the genes in juveniles that were differentially expressed were for cuticular and calcification processes. While inferences regarding the specific biological responses associated with changes in gene expression are likely to change as resources for red king crab genomics enabled studies continue to improve (i.e. better assemblies and annotation), our inferences about general sensitivities to temperature and pH across the life stages of red king crab are robust and unlikely to shift. Overall, our data suggest that red king crab are more sensitive to warming than acidification, and that responses to acidification at the transcriptomic level occur at different levels of pH across life stages, with juveniles being less pH sensitive than adults.

The elimination of unwanted catch in mixed species fisheries is technically challenging given the complexity of fish behaviour within nets. Most approaches to date have employed technologies that modify the nets themselves or use physical sorting grids within the gear. There is currently increasing interest in the use of artificial light to either deter fish from entering the net, or to enhance their escapement from within the net. Here, we evaluated the differences in catch retained in a standard otter trawl, relative to the same gear fitted with a square mesh panel, or a square mesh panel fitted with LEDs. We found that the selectivity of the gear differed depending on water depth. When using a square mesh panel in shallow depths of 29–40 m the unwanted bycatch of whiting and haddock was reduced by 86% and 58% respectively. In deep, darker water (45–95 m), no change in catch was observed in the square-mesh panel treatment, however when LEDs were added to the square-mesh panel, haddock and flatfish catches were reduced by 47% and 25% respectively. These findings demonstrate the potential to improve the performance of bycatch reduction devices through the addition of light devices to enhance selectivity. The results also highlight species-specific and site-specific differences in the performance of bycatch reduction devices, and hence a more adaptive approach to reduce bycatch is probably required to maximize performance.

The mojarras (Eucinostomus) are a widespread group of coastal fishes of controversial taxonomy because of similarities in their external morphology. In the present study, we assessed the genetic diversity of species and populations of Eucinostomus using DNA barcodes using a systematic and phylogeographic context. In total, 416 COI sequences of all valid Eucinostomus representatives were analysed based on public databases and collected specimens from the north-eastern coast of Brazil (Western South Atlantic). Several cases of misidentification were detected in the barcode dataset (E. argenteus, E. harengulus, E. gula, E. dowii and E. jonesii) that could account for the taxonomic issues in this genus. In contrast, we identified four molecular operational taxonomic units (MOTUs), with divergence above 2% in the Western Atlantic, that correspond to cryptic forms within E. argenteus, E. harengulus, E. gula and E. melanopterus. These data suggest that Plio-Pleistocene events (rise of the Panama isthmus, Amazonas outflow and sea-level fluctuations) played a major role in the diversification of mojarras. While subtle morphological differences have been used as proxies to discriminate Eucinostomus species, the genetic data proved to be efficient in differentiating them and revealing potentially undescribed taxa. Therefore, we recommend that further taxonomic studies in mojarras should incorporate DNA-based evidence.

Iranian coastal fishers targeting narrow-barred Spanish mackerel (Scomberomorus commerson) recently replaced their historical multifilament gillnets with those made from monofilament, evoking management concerns over potential increases in catch-per-unit-of-effort. During 20 fishing days, we compared catches from replicate surface-set gillnets that were identical in terms of mesh size (140 mm stretched opening), length (180 m), depth (30 m), hanging ratio (0.56) and spatio-temporal deployment, but had different materials: multifilament (1.8-mm diameter twisted twine) vs monofilament (0.8-mm diameter twine). Compared with the multifilament gillnet, there was a trend of greater catches (up to 1.3×) of S. commerson and another retained species, mackerel tuna (Euthnus affinis), along with one discarded species, giant catfish (Netuma thalassina) by the monofilament gillnet. However, statistical significance was restricted to E. affinis catches and a bias towards smaller S. commerson. These differences were attributed to species-specific catching mechanisms within gillnet material, with larger S. commerson retained by their teeth in the multifilament and all E. affinis more securely retained by their deeper bodies in the monofilament. Gillnet materials require regulation to preclude excessive effort on fully exploited stocks of species such as S. commerson.

Sea turtles are long-lived migratory species that are sensitive to anthropogenic impacts. Their condition reflects that of marine ecosystems and can serve as an indicator for environmental monitoring. However, evaluating body condition parameters, as a proxy for health, is challenging and often overlooked. The purpose of this study was to validate a straightforward method for assessing the body condition of nesting loggerhead sea turtles (Caretta caretta), and to investigate whether body condition was correlated with epibiont loading. To achieve this, 60 nesting loggerhead sea turtles were sampled and categorized into five body conditions ranging from very poor to very good. Injuries, skin deformities and plastron shape were used for this classification. Epibionts were collected from the same turtles and identified, with species richness, diversity, community structure and barnacle loading compared among body conditions. Epibiont communities were correlated with body condition as both species richness and abundance increased with a decline in turtle body condition. Barnacle epibionts showed great variation among different body conditions, having significantly higher numbers on turtles in poor condition. All parameters in this study showed similar distinctive relationships with body condition of loggerhead turtles from poor to very good body condition. The body condition index used in this study can be applied readily and, along with barnacle counts, can provide basic baseline information on turtle health.

This study evaluated the feeding habits of the franciscana dolphin (Pontoporia blainvillei) in south-eastern Brazil. Stomach contents were collected from a total of 145 dead specimens found incidentally caught by fishing vessels or stranded between 2005 and 2015. Fish otoliths, cephalopod beaks and whole non-digested prey were used for prey species identification. A total of 9337 prey items were identified, including 26 species of teleost fishes and three species of cephalopods. The most important prey families were Sciaenidae among fish and Loliginidae among cephalopods. Franciscana dolphins tended to feed on small fish (mean = 5.25 cm) and cephalopods (mean = 8.57 cm). The index of relative importance (IRI) showed that Pellona harroweri and Doryteuthis plei were the most important prey for both males and females. The PERMANOVA test confirmed that there is no significant difference between the feeding habits of different sexes, but detected a significant difference among seasons. Overall, our results show that franciscana dolphins are predominantly ichthyophagous and non-selective in relation to the type of prey, feeding on pelagic, demersal and pelagic-demersal prey.

This study focuses on the dolphins populating the water between Gibraltar and Algeciras in the south Iberian Peninsula, an area subjected to pressure due to high human activity. The area is considered an important feeding and breeding ground for common dolphins (Delphinus delphis). Due to the degree of residence of some specimens, and the large gap in knowledge about the evolution of wounds in D. delphis specimens with lacerations, this work sought to perform the following analyses: identify lacerated individuals; characterize sequences of ‘before – during – after’ with respect to the occurrence of lacerations; and associate the type of injury with its severity. This work will inform future studies by expanding a database on injured individuals and contribute to periodical monitoring of specimens that frequent these geographic areas. Between 2013 and 2017, we were able to track the healing process of five injured individuals of common dolphins from a whale-watching platform thanks to photo identification. The animals exhibited fresh external wounds from different sources. In the majority of individuals, the wound-healing processes lasted 3–21 weeks. The frequency with which sightings are made and knowledge about the local population will help track injured animals, follow their wound evolution, and document their survival rates. The documented injuries inflicted by human interactions described in this paper may include fishing interactions and propeller strikes, probably as a consequence of the high intensity of recreational fishing and whale-watching activities in the area.