Hostname: page-component-586b7cd67f-t8hqh Total loading time: 0 Render date: 2024-12-03T20:45:01.007Z Has data issue: false hasContentIssue false
  • English
  • Français

Genetic structure of the wide-ranging fiddler crab Uca crassipes in the west Pacific region

Published online by Cambridge University Press:  24 September 2012

Misuzu Aoki  and
Keiji Wada
Misuzu Aoki*
Affiliation:
KYOUSEI Science Center for Life and Nature, Nara Women's University, Kitauoya-higashimachi, Nara 630-8506, Japan
Keiji Wada
Affiliation:
KYOUSEI Science Center for Life and Nature, Nara Women's University, Kitauoya-higashimachi, Nara 630-8506, Japan
*
Correspondence should be addressed to: M. Aoki, KYOUSEI Science Center for Life and Nature, Nara Women's University, Kitauoya-higashimachi, Nara 630-8506, Japan email: [email protected]
Get access Rights & Permissions [Opens in a new window]

Abstract

The genetic relationship between fiddler crab Uca crassipes populations from the continental coast, continental islands, and oceanic islands in the west Pacific was investigated using 1039 bp (base pairs)-long combined 12Sr-RNA–16Sr-RNA sequences and a 504-bp mitochondrial DNA control region. The combined 12Sr-RNA–16Sr-RNA sequences indicated that the Vietnamese population, located along the continental coast, and the Chichi-jima population, which is located on an oceanic island north of the Northern Mariana Islands, formed different clades than populations from the other Ryukyu Islands and Moorea Island. Conversely, the Ryukyu Islands and Moorea Island populations exhibited a close genetic relationship, although the mtDNA control region indicated significant differentiation between the Ryukyu Islands and Moorea Island populations. The isolated Vietnam and Chichi-jima populations exhibited higher genetic diversity in the control region than the other populations.

Keywords

genetic structurecontrol regionfiddler crabwest Pacific
Type
Research Article
Information
Journal of the Marine Biological Association of the United Kingdom , Volume 93 , Issue 3 , May 2013 , pp. 789 - 795
Copyright
Copyright © Marine Biological Association of the United Kingdom 2012

Access options

Get access to the full version of this content by using one of the access options below. (Log in options will check for institutional or personal access. Content may require purchase if you do not have access.)

References

REFERENCES

Aoki, M., Imai, H., Naruse, T. and Ikeda, Y. (2008) Low genetic diversity of oval squid, Sepioteuthis cf. lessoniana (Cephalopoda: Loliginidae), in Japanese waters inferred from a mitochondrial DNA non-coding region. Pacific Science 62, 403–411.Google Scholar
Avise, J.C. (1994) Molecular markers. London: Natural History and Evolution, UK, and Chapman & Hall.Google Scholar
Babbucci, M., Buccoli, S., Cau, A., Cannas, R., Goñi, R., Díaz, D., Marcato, S., Zane, L. and Patarnello, T. (2010) Population structure, demographic history, and selective processes: contrasting evidences from mitochondrial and nuclear markers in the European spiny lobster Palinurus elephas (Fabricius, 1787). Molecular Phylogenetics and Evolution 56, 1040–1050.Google Scholar
Benzie, J.A.H. and Williams, S.T. (1995) Gene flow among giant clam (Tridacna gigas) populations in Pacific does not parallel ocean circulation. Marine Biology 123, 781–787.Google Scholar
Benzie, J.A.H. (1999) Major genetic differences between crown-of-thorns starfish (Acanthaster planci) populations in the Indian and Pacific Oceans. Evolution 53, 1782–1795.Google Scholar
Clement, M., Posada, D. and Crandall, K.A. (2000) TCS: a computer program to estimate gene genealogies. Molecular Ecology 9, 1657–1660.Google Scholar
Crane, J. (1975) Fiddler crabs of the world. Princeton: Princeton University Press.Google Scholar
Diniz, F.M., Maclean, N., Ogawa, M., Cintra, I.H.A. and Bentzen, P. (2005) The hypervariable domain of the mitochondrial control region in Atlantic spiny lobsters and its potential as a marker for investigating phylogeographic structuring. Marine Biotechnology 7, 462–473.CrossRefGoogle ScholarPubMed
Excoffier, L., Laval, G. and Schneider, S. (2005) Arlequin (version 3.0): an integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online 1, 40–50.Google Scholar
Fukuda, H. (1993) Marine Gastropoda (Mollusca) of the Ogasawara (Bonin) Islands, Part 1: Archaeogastropoda and Neotaeniglossa. Ogasawara Research 19, 1–86.Google Scholar
Fukuda, H. (1994) Marine Gastropoda (Mollusca) of the Ogasawara (Bonin) Islands, Part 2: Neogastropoda, Heterobranchia and fossil species, with faunal accounts. Ogasawara Research 20, 1–126.Google Scholar
Gopurenko, D., Hughes, J.M. and Keenan, C.P. (1999) Mitochondrial DNA evidence for rapid colonisation of the Indo-West Pacific by the mud crab Scylla serrata . Marine Biology 134, 227–233.Google Scholar
Grabowski, M. and Stuck, K.C. (1999) Structure and intraspecific variability of the control region mtDNA in the pink shrimp, Farfantepenaeus duorarum (Decapoda, Penaeidae). In Schram, F.R. and von Vaupel Klein, J.C. (eds) Crustaceans and the biodiversity crisis. Volume I. Leiden, The Netherlands: Brill Academic Publishers, pp. 333–344.Google Scholar
Hudson, R.R., Slatkin, M. and Maddison, W.P. (1992) Estimation of level of gene flow from DNA sequence data. Genetics 132, 583–589.Google Scholar
Kitamura, T., Nitta, A., Wakao, H. and Oda, T. (2005) Population structure in mitochondrial DNA of fiddler crab. In Japanese Society for DNA Polymorphism Research (ed.) DNA polymorphism. Volume 13. Tokyo: Toyo Shoten, pp. 140–144.Google Scholar
Kitaura, J., Wada, K. and Nishida, M. (1998) Molecular phylogeny and evolution of unique mud-using territorial behavior in ocypodid crabs (Crustacea: Brachyura: Ocypodidae). Molecular Biology and Evolution 15, 626–637.Google Scholar
Lavery, S., Moritz, C. and Fielder, D.R. (1996) Indo-Pacific population structure and evolutionary history of the coconut crab Birgus latro . Molecular Ecology 5, 557–570.Google Scholar
Li, Q., Zhong, G. and Tian, J. (2009) Stratigraphy and sea level changes. In Wang, P. and Li, Q. (eds) The South China Sea, paleoceanography and sedimentology. Volume 13. Dordrecht, The Netherlands: Springer Science + Business Media B.V., pp. 75–170.Google Scholar
McMillen-Jackson, A.L. and Bert, T.M. (2003) Disparate patterns of population genetic structure and population history in two sympatric penaeid shrimp species (Farfantepenaeus aztecus and Litopenaeus setiferus) in the eastern United States. Molecular Ecology 12, 2895–2905.Google Scholar
McMillen-Jackson, A.L. and Bert, T.M. (2004) Genetic-diversity in the mtDNA control region and population structure in the pink shrimp Farfantepenaeus duorarum . Journal of Crustacean Biology 24, 101–109.Google Scholar
Meyer, C.P., Geller, J.B. and Paulay, G. (2005) Fine scale endemism on coral reefs: archipelagic differentiation in turbinid gastropods. Evolution 59, 113–125.Google Scholar
Nei, M. (1987) Molecular evolutionary genetics. New York: Columbia University Press.Google Scholar
Palumbi, S.R., Martin, A., Romano, S., McMillan, W.O., Stice, L. and Grabowski, G. (1991) The simple fool's guide to PCR. Version 2. Honolulu: University of Hawaii.Google Scholar
Palumbi, S.R. (1996) What can molecular genetics contribute to marine biogeography? An urchin's tale. Journal of Experimental Marine Biology and Ecology 203, 75–92.Google Scholar
Posada, D. and Crandall, K.A. (1998) Modeltest: testing the model of DNA substitution. Bioinformatics 14, 817–818.Google Scholar
Rambaut, A. (2009) FigTree: Tree Figure Drawing Tool, Version 1.3.1. Edinburgh, Scotland: Institute of Evolutionary Biology, University of Edinburgh.Google Scholar
Raymond, M. and Rousset, F. (1995) An exact test for population differentiation. Evolution 49, 1280–1283.Google Scholar
Seno, T. and Maruyama, S. (1984) Paleogeographic reconstruction and origin of the Philippine Sea. Tectonophysics 102, 53–84.Google Scholar
Swofford, D.L. (2001) PAUP*: Phylogenetic Analysis Using Parsimony, Version 4.0. Sunderland, MA: Sinauer Associates.Google Scholar
Templeton, A.R., Crandall, K.A. and Sing, C.F. (1992) A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. III. Cladogram estimation. Genetics 132, 619–633.Google Scholar
Thompson, J.D., Higgins, D.G. and Gibson, T.J. (1994) ClustalW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice. Nucleic Acids Research 22, 4673–4680.Google Scholar
Tjia, H.D. (1980) The Sunda Shelf, Southeast Asia. Zeitschrift für Geomorphologie 24, 405–427.Google Scholar
Tsoi, K.H., Wang, Z.Y. and Chu, K.H. (2005) Genetic divergence between two morphologically similar varieties of the kuruma shrimp Penaeus japonicus . Marine Biology 147, 367–379.Google Scholar
Weir, B.S. and Cockerham, C.C. (1984) Estimating F-statistics for the analysis of population structure. Evolution 38, 1358–1370.Google Scholar
Williams, S. T. and Benzie, J.A.H. (1998) Evidence of a biogeographic break between populations of a high dispersal starfish: congruent regions within the Indo-West Pacific defined by color morphs, mtDNA, and allozyme data. Evolution 52, 87–99.Google Scholar
Williams, S., Apte, D., Ozawa, T., Kaligis, F. and Nakano, T. (2011) Speciation and dispersal along continental coastlines and island arcs in the Indo-West Pacific turbinid gastropod genus Lunella . Evolution 65/66, 1752–1771.Google Scholar
Yamauchi, M., Miya, M. and Nishida, M. (2002) Complete mitochondrial DNA sequence of the Japanese spiny lobster, Panulirus japonicus (Crustacea: Decapoda). Gene 295, 89–96.Google Scholar
Yamauchi, M., Miya, M. and Nishida, M. (2003) Complete mitochondrial DNA sequence of the swimming crab, Portunus trituberculatus (Crustacea Decapoda: Brachyura). Gene 311, 129–135.Google Scholar
Supplementary material: File

Aoki Supplementary Material

Appendix

Download Aoki Supplementary Material(File)
File 1.9 MB